ID AF315308; SV 1; linear; genomic RNA; STD; VRL; 8146 BP. XX AC AF315308; XX DT 20-SEP-2001 (Rel. 69, Created) DT 20-SEP-2001 (Rel. 69, Last updated, Version 1) XX DE Sugarcane striate mosaic associated virus RNA polymerase, movement protein DE 1, movement protein 2, movement protein 3, and coat protein genes, complete DE cds. XX KW . XX OS Sugarcane striate mosaic-associated virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae. XX RN [1] RP 1-8146 RX DOI; 10.1007/s007050170070. RX PUBMED; 11676409. RA Thompson N., Randles J.W.; RT "The genome organisation and taxonomy of Sugarcane striate mosaic RT associated virus"; RL Arch. Virol. 146(8):1441-1451(2001). XX RN [2] RP 1-8146 RA Thompson N., Randles J.W.; RT ; RL Submitted (20-OCT-2000) to the INSDC. RL Applied and Molecular Ecology, Adelaide University, PMB 1, Glen Osmond, SA RL 5064, Australia XX DR MD5; 6e30a484b292bbcc8579f4aaa76b2d4e. XX FH Key Location/Qualifiers FH FT source 1..8146 FT /organism="Sugarcane striate mosaic-associated virus" FT /mol_type="genomic RNA" FT /note="SCSMaV" FT /db_xref="taxon:167927" FT CDS 73..5886 FT /codon_start=1 FT /product="RNA polymerase" FT /note="RdRP" FT /db_xref="GOA:Q91BP7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91BP7" FT /protein_id="AAL05444.1" FT /translation="MAILTFKPPKQLLIAQLSSEEQARIRSSVTRKLAQEEENDQGLFS FT YHVSPYCAEKLIKSGVQLCAYSSDVHSHPCCKMLENHILYRVLPSYVDSDFILVGIKHS FT KLAFLKPRGAKKNVDLSTVKVLNRFVTSLDRSRYGKEFNHLNIMSTFTPEPKGSSSYTP FT ELKSLIPNLERFKGHKLFFHDELHYWKDESIIKMLSSLEPSVVYATVVCPPELLIGAKQ FT SYNDWLYTFEIIGDQILFAPDGKMNSAYFQPVNCARLLRAKRIWLDKHNYYDIDLVYSN FT FSHHLLCFSKGSNLKNQDLRAFSDFDAIKLNYISELMVNAESCFPISWTVVKGLYDYLE FT SLTKEDYRSGKAKQTHYMPNCSGKQLKFCTDLIKLYLEAPHIKTMIGSSPVHNFKVLFT FT RMFPACIKKNFSFYKGKLLKSLFEHLAPLAFHVKTYDLHLGFVFKFQELKNVTDLMEDV FT HEFEVDFVREYDPFQMRSTPYVGLAPLRDESYYKRMKCGEAFFDNMIGQIMRSHLSGYG FT TNTNPAELFLRINLTIVGRVEFLVNGHHDFVIFYINKHFKVKKDPRYKNLYFANMTLEL FT KLRWLSCRRFRKYQKFLPCGLVSLAEVQILWRNIARSIQSGSHEAQGQNEQVDSHGDGV FT AIEEPERKGNTLEKLNEATLVTHLQHYLKNPVVDDFSRCAFDVDSKTLSNLIDCLKQIC FT DTSINVAIGCDCSNSDLNLLKISKMASSVASYVNLDNVKSVKINWTEAGEILVGLEDQP FT LFVVVLGKDINSITLARDHVMQFPELEENSAILIERNNISKISVSGPSALMIFPKDQNL FT LDCHLIGCDQIPPAKIDFIDGYIKTTVDPSLDSRLTCINVPANGDCFWHSVSLYLSVEA FT KMIKDAPVLRNRNPQNARLVEPMGDKVWAENEAILNCACFYNLNIRIVFEHELHTFRPH FT DLNEDSTEVWLKNLDHMHFCPAKFINSCVMEPISKAVDIPPLNVQRMISSQESLHSEYE FT RLSSGKSFDLLGLESLMTFFNIGAEVQENGHKFILNENGSRARSFILENNHIEFVRGDK FT KDLRKEGIGFVKLMNANQSKSVLSLACSKVKYTPSYDRAFKLSKAFANGYTGIMLSSEK FT FGEIEINGKNDEREINVMMGTFGAGKTRVFVDYIQAYSGRGLFYVSPRKNLKELFDNSA FT IQAVQGFKTKSSDKKGSVKSFHSSFTFETAIMKAGQIGDDSILIIDEIQLYPPGYLDLI FT LLLIPSSCMVICAGDPVQSDYDSDGDRLYFLNDKPDIERLLEGQSYKYAIKSRRFKSSL FT FIGRLPCDMPGLQGMGMDTYGIYESISSVPQDLIKRSFFLVSSFDEKKIIKANFKETHN FT KILTFGESTGSTFQEIVILITTSSEKASERRWVTALSRASTSISFLNLTGIGIQELIST FT TYFGRFLQKFLSAECKREDIKPYLYGEPKFVDDFRSIGRRSAEEKEVKVDGDPWLKCIL FT HFFETPIPDEVECVKVDMVEQKAKTHLPVSSFEVLWAHFNEKLLLKEIRERRIDDLVSD FT QFAWDHRSQGLAINNAATRYESIFPRHHHNDKVTFLMAVKKRLTFGSPAKNGRMLREAM FT PYGEILLKEFLKRVPIKNDRNDHLFLECLMDFEEKKTSKDSATIANHCIRSQNSWPIDI FT ADIFMKSQLCTKMESMFCEAKAGQTLACFHHVVLARFSPWVRYIEKKLVSSLPDNYYIH FT SGKNFDQLNAWVKANNFVGECTESDYEAFDASQDHYILAFELALMKYLGLPNELIEDYK FT YIKIHLGSKLGDFAIMRFTGEASTFLFNTMANMLFTFLVYDIKGNESICFAGDDMYANT FT SLKTCSKNKSLLKKFTLKAKVQVTESPTFCGWHLTEDGIYKDPILVSFRFMIALEKGIL FT HECLESYSIECSYAYNMGSAVSRHMDQLSLAYHYCCVRFILKNSKLLRSDVKKFFKDGL FT QLTQ" FT CDS 5919..6539 FT /codon_start=1 FT /product="movement protein 1" FT /note="ORF2; TGB; component of triple gene block" FT /db_xref="GOA:Q91BP6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q91BP6" FT /protein_id="AAL05445.1" FT /translation="MEIVCRYLDDFKFERTSLELSSPIVVHAVPGSGKSTLIRKCITEN FT PSLTACTFGKPDLPNLTGTYIKGYKEGEKYDIIDEYIGNRFECVPVALFSDPFQNCEQY FT INTAHYIGRTSHRFGVVLLSYCAGLVIKFPHLAKTRSLRVQVTLLNLQVLSYALSLTLR FT TIYLHITSSLFIPWTSAERLLTKLHSIILVISAILLVLSYIFR" FT CDS 6552..6914 FT /codon_start=1 FT /product="movement protein 2" FT /note="ORF3; TGB; component of triple gene block" FT /db_xref="GOA:Q91BP5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q91BP5" FT /protein_id="AAL05446.1" FT /translation="MKSNIASLMSALRQPSDNSESIKICAALGGTALLLYIWCQPNNPK FT SGDLGHWLPFGGVYKDGNKFVRYNSPLHTAPPFWLLIAIPLAFFALTHFSYFSNTPRRR FT VTITHYPLCGHFVCRR" FT CDS 6902..7105 FT /codon_start=1 FT /product="movement protein 3" FT /note="ORF4; TGB; component of triple gene block" FT /db_xref="GOA:Q91BP4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q91BP4" FT /protein_id="AAL05447.1" FT /translation="MQALEIYILVVFLLLIASLLFKQESQQCIIHIDGTKAFITGCTDQ FT KWLDTAIKHLRPDNQRSGWFRR" FT CDS 7102..7734 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:Q91BP3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q91BP3" FT /protein_id="AAL05448.1" FT /translation="MSGPPPSTGANASSGAQPTTQQETSTVFKKSRRGSKSKFVSAVTK FT EQVRRVVELDIETDKIARDEDLEKVKAAWLAINVPSDKIFEVSLEITLSCAHTSTSNKQ FT KFKGKSKFCDILLAEIAGCITKEEVTIRSFCAYWAKYVWNAMHERNEPPLNWVALGYTE FT QNRFAAFDFFYGVDSPASAEPEGGLLAPTTESMRAANMARKEIAIKE" XX SQ Sequence 8146 BP; 2431 A; 1513 C; 1711 G; 2491 T; 0 other; tgaaaacaaa actacacaat tgagctcaaa ctgctacaat atccactcaa tataccttat 60 tgattcatat tgatggcaat tctcaccttc aaacccccta agcagctctt aatcgctcaa 120 ttgtcctctg aagagcaggc cagaattagg agctctgtga cacgaaagtt agcgcaggag 180 gaagagaatg atcaaggttt attcagttat catgtctctc catactgtgc agagaagttg 240 atcaagtctg gtgttcaact ctgtgcctac tcctctgatg tacatagtca tccttgttgt 300 aaaatgctag aaaatcatat tttatacaga gttcttcctt cttatgtaga ttcagatttt 360 atccttgtag gtattaagca ttctaagtta gcctttctta aaccaagagg cgcgaaaaag 420 aatgttgatc tttcaactgt taaggtgctc aatcgttttg tcacaagtct tgacagatcc 480 aggtatggta aagagtttaa tcacctcaat atcatgtcaa cattcactcc tgaacctaag 540 ggtagcagtt cctatacccc tgaacttaaa agcctaattc caaatctgga gcgatttaag 600 ggccacaaac tttttttcca tgatgagttg cattactgga aggatgaatc tattattaaa 660 atgctatcat ctttagagcc ttcagtagtg tacgcaactg ttgtatgccc acccgaattg 720 cttattggtg ctaagcagag ttataatgat tggctataca cttttgaaat cattggggat 780 caaatcttat ttgctccaga cggaaagatg aatagtgcct acttccaacc tgtcaattgt 840 gcccgccttc taagagcaaa aaggatatgg ctggataagc ataactatta tgatatagat 900 ctggtctatt caaatttctc gcatcatttg ctctgcttct caaagggctc aaatcttaag 960 aatcaagatc ttagggcttt ctctgacttt gacgcaatta aattaaatta cataagtgag 1020 ctcatggtga atgctgagag ttgctttcca attagttgga ctgttgtaaa agggctttat 1080 gattatcttg agagcttgac aaaagaggat tacagatcag gtaaggctaa gcaaactcat 1140 tatatgccca attgctcagg gaaacaactt aaattttgca ctgaccttat caaactttat 1200 cttgaagctc cacatattaa aactatgata ggttctagcc cagttcacaa ctttaaggtc 1260 ttgtttacac ggatgttccc tgcttgcatt aagaaaaatt tctcttttta taaaggaaaa 1320 ttgttgaaaa gtttatttga acatctagct cctttggctt tccatgtcaa aacttatgat 1380 cttcatttag gttttgtttt caaattccag gagctgaaaa atgtgacgga tctaatggag 1440 gatgttcatg aatttgaagt tgactttgtc agagaatatg acccattcca gatgcgcagc 1500 actccttatg ttggtcttgc ccctttgcgt gatgaatcat attataagag gatgaaatgt 1560 ggtgaggctt tctttgacaa catgattggg caaataatga gatcccattt aagcgggtat 1620 ggcacaaata ctaatcctgc tgaacttttc ctaagaatca atttgaccat tgttggaagg 1680 gttgagtttc ttgtgaatgg ccatcatgat tttgtaattt tttatatcaa caaacatttt 1740 aaggtaaaga aggaccccag gtacaaaaac ttgtactttg caaatatgac cctcgaattg 1800 aaattgaggt ggctttcgtg cagacgtttt agaaagtatc agaagttctt accctgcggt 1860 ctggtgagtc ttgctgaagt acaaattctt tggagaaata ttgcgagaag catccagagt 1920 ggatcacatg aggctcaagg acaaaatgaa caagttgatt cccatgggga tggagtagca 1980 attgaggagc cagaaaggaa ggggaatact ttggaaaaat taaatgaagc tactttagta 2040 acccacctcc agcactacct caagaatcct gttgttgatg atttttcaag atgcgccttt 2100 gatgtcgact caaagactct atctaatcta attgattgtc ttaaacagat ttgtgatact 2160 agcataaatg ttgccattgg atgtgactgt tcaaattcag atctaaattt actcaagatt 2220 agtaaaatgg cctcctctgt ggcatcatat gttaatctgg acaatgtcaa atctgtgaaa 2280 atcaattgga ccgaagctgg tgagatctta gtcggtttag aggatcagcc tctttttgtc 2340 gtggttcttg ggaaggatat taattcaatt acattagcaa gggatcatgt tatgcaattt 2400 cctgagcttg aagaaaattc agcaatttta attgaaagga ataacatctc taaaatttct 2460 gtatctggcc catctgctct catgatcttt ccaaaagatc agaatttgct ggattgtcat 2520 ttaattggct gcgatcaaat cccccctgca aagattgatt tcatagatgg gtacatcaaa 2580 actacggtgg atcctagtct tgattctcgg ttaacatgca tcaatgtacc cgcaaatggt 2640 gattgttttt ggcatagtgt atctctttat cttagtgttg aggccaaaat gatcaaagat 2700 gcacctgttc taagaaacag gaatccccaa aatgccagat tagttgaacc aatgggtgat 2760 aaagtttggg ctgaaaatga ggctatacta aactgtgcat gtttttacaa cttgaatata 2820 cgtatagtct ttgaacatga attgcatacc ttccgtcccc atgatttgaa tgaagattca 2880 actgaagttt ggctcaaaaa tttggatcat atgcattttt gtccagcaaa gtttataaat 2940 tcttgtgtca tggagccaat ttctaaagca gttgacattc cgcctttgaa tgtacaaaga 3000 atgatatctt cacaggagag tcttcactcc gagtatgaga gattgagcag tgggaaatcc 3060 tttgatctcc ttggactgga gagtttgatg actttcttca acataggggc tgaagtccag 3120 gaaaatggtc acaagtttat tttgaacgag aatggcagta gggctcgaag cttcattctg 3180 gagaataatc atattgaatt tgttcgtgga gataaaaagg atctaagaaa ggagggaatt 3240 gggtttgtta agctaatgaa tgcaaatcaa agtaagtctg tgctgtctct cgcctgctca 3300 aaggttaaat acaccccatc ttatgacaga gcctttaaat tgtcaaaagc ttttgctaat 3360 ggttatacag gcataatgct tagcagtgaa aaatttggcg agattgaaat caacggtaag 3420 aatgacgaga gggaaatcaa tgttatgatg ggaacatttg gggctggaaa gactagagta 3480 tttgtggatt atattcaggc ttactctggt agaggtttat tttatgttag cccaagaaag 3540 aaccttaagg agcttttcga taactctgcc atccaggcag ttcaaggctt taaaaccaag 3600 tcaagtgaca agaaaggcag tgtaaagagt tttcatagct ctttcacctt tgagactgct 3660 ataatgaaag ccggccagat tggtgatgat tcaattctta ttatagacga gattcagctc 3720 tatccgcctg gctaccttga tttaatcctt ctattgatac cttcaagttg catggtaatt 3780 tgtgctggtg accctgttca gtctgactat gattcagatg gtgaccgttt gtattttctt 3840 aatgataaac cagatattga gcggttgtta gagggtcaat cttataagta tgcaatcaaa 3900 tcaagaaggt ttaaatcctc cttattcatt ggacgactac cttgtgatat gcccggtctt 3960 caagggatgg gcatggacac ttatgggatt tatgagagca ttagcagtgt gcctcaggat 4020 ttaattaaga gatccttctt tttggtgagt agttttgatg agaagaaaat tattaaagcc 4080 aattttaaag agactcataa caagattttg acttttgggg aatccacagg atcaactttt 4140 caagaaattg tcattctcat aactactagt tcagaaaagg caagtgagag gagatgggta 4200 acagcattaa gcagagcatc gacaagcata tcttttctta acctgactgg cattggaata 4260 caagagctta tatcgactac ttattttggc agattcttgc aaaaattttt aagtgctgaa 4320 tgcaagaggg aggatattaa gccatattta tacggagagc caaaatttgt tgatgacttc 4380 aggagcatag gaagacgaag tgcagaggag aaagaagtca aagttgatgg tgatccgtgg 4440 ttaaagtgca tcttgcattt ctttgaaact ccaattccag atgaagttga gtgtgttaaa 4500 gttgatatgg tagagcaaaa agcaaaaact cacttaccgg tttcgtcctt tgaggtttta 4560 tgggcccatt ttaatgaaaa acttttgctt aaggagatca gggagcggag gatagatgat 4620 cttgtttctg accagtttgc atgggatcat aggtcacaag gactagcaat taataatgct 4680 gccacaaggt atgaatcaat attccctagg catcaccaca atgataaagt gacctttttg 4740 atggcagtta agaaaaggtt gacctttgga tcgcccgcaa agaatgggag gatgcttaga 4800 gaggctatgc cctatggtga aatattactc aaggagtttc tcaagagggt ccctattaag 4860 aatgatagaa acgatcattt atttttagaa tgtctaatgg attttgaaga aaaaaaaact 4920 tccaaggact cagccacaat cgcaaatcac tgcatacgct cacagaattc atggccaatt 4980 gatattgctg atatattcat gaagtcacaa ctctgcacaa aaatggagag tatgttctgc 5040 gaggcaaagg ctggtcagac tttagcttgt ttccatcatg tagttcttgc acgattttct 5100 ccatgggtcc gttacataga aaagaagctg gtcagttcac tgccagataa ttactatata 5160 cactctggaa agaactttga tcaactcaat gcttgggtta aggcaaacaa ttttgtgggt 5220 gaatgcactg aatcggatta tgaggccttt gatgcaagtc aagatcacta tatactggcc 5280 tttgaattag cattaatgaa gtaccttggt ttacccaatg agttgataga ggactacaag 5340 tacattaaga ttcatttggg ttcaaaattg ggtgattttg ccataatgag attcaccggt 5400 gaagccagca ctttcttatt taacacaatg gcaaatatgc ttttcacttt tctggtctat 5460 gatatcaaag gcaatgagtc aatttgcttt gctggcgatg acatgtatgc aaatacaagt 5520 cttaagacat gcagcaagaa caaaagtttg cttaaaaagt ttacactcaa agctaaagtt 5580 caggtaactg aaagcccaac attttgcgga tggcacttga cagaggatgg aatttataag 5640 gacccaatac ttgtgtcttt cagattcatg attgcacttg agaaagggat cttacacgaa 5700 tgccttgagt cttactcgat tgagtgttca tatgcatata acatgggaag tgcagtttca 5760 agacatatgg accagcttag ccttgcttat cattactgct gcgtgaggtt tattcttaaa 5820 aattcaaaac ttcttcgctc tgatgtgaag aagttcttta aggacgggct ccagcttacg 5880 cagtagccac gtttaggctg cgacttgtat atattgatat ggaaatagtc tgtcgttact 5940 tagacgactt taagtttgag agaactagct tagagctttc ttcacctata gtggttcacg 6000 cagttccagg ttcagggaag tctaccctca taagaaagtg cataactgaa aatccttctt 6060 tgacagcctg cacctttgga aagccagact tgcccaatct tactggtacc tatataaaag 6120 ggtataaaga aggtgagaag tatgacataa ttgatgagta catcggcaac agatttgagt 6180 gcgttcctgt tgcactcttt tctgatcctt ttcagaattg tgaacaatac attaatacag 6240 cacattatat tggacgaact tctcaccgtt tcggcgttgt actgctgagc tattgcgcgg 6300 gcttggttat caagtttcct catctcgcaa agacaaggtc actcagggtt caggttactc 6360 tattgaatct acaggtgcta tcatatgctt tgagcctgac actgaggact atttacttgc 6420 acataacctc aagcctcttc atcccttgga catccgcgga gagacttttg acaaagttac 6480 attctatcat tctagtgatc tccgcgatct tgttggtcct gagctatata tttcgctgac 6540 tcgccataga aatgaaatca aatattgcaa gcttaatgtc agctcttagg cagccatctg 6600 ataattctga gtcaattaaa atttgcgctg ctctaggggg gactgcatta cttctttata 6660 tttggtgtca gcctaataat ccaaaatcag gggacctggg ccattggtta ccttttgggg 6720 gagtttacaa agacggtaac aaattcgtca ggtataattc acctcttcac accgctcctc 6780 ctttctggct tttaattgca atacctttgg ccttctttgc tctcactcac tttagctact 6840 tcagtaacac acccagaaga agagtgacca taacacatta tccattgtgt ggccactttg 6900 tatgcaggcg ctagagatat atattctggt ggtttttcta ctgctgatag cctccttact 6960 cttcaaacaa gagagtcagc agtgcataat tcacattgac gggaccaaag cttttatcac 7020 cggctgcact gatcaaaagt ggttggatac tgcaatcaaa cacctgagac cagacaatca 7080 aagatcaggt tggtttagaa gatgagtggg ccaccccctt caactggtgc caatgcttcc 7140 agtggtgctc aaccaacaac tcagcaggaa acgagcacag tttttaagaa aagccgcaga 7200 ggatcaaaat ctaaatttgt ttctgctgtt acaaaggagc aggttaggag ggtggtcgag 7260 cttgacattg agacagacaa aatagcccgg gatgaggacc ttgagaaagt gaaagctgct 7320 tggcttgcca ttaatgtgcc atccgacaag atatttgaag tttcccttga aataacactt 7380 tcctgtgctc acacttcgac ttcaaataag cagaaattta aaggcaagtc caaattctgc 7440 gacatattgc ttgctgaaat agctggctgt atcactaagg aggaggtaac aatacgttcc 7500 ttttgtgctt attgggcaaa atacgtctgg aacgcaatgc atgaacgtaa tgagcctcct 7560 ctcaattggg ttgctcttgg gtatacagaa caaaaccgtt ttgcagcttt tgactttttc 7620 tatggtgttg actctcctgc ttcagcagaa ccagaaggtg ggttacttgc tcctaccact 7680 gagtctatga gagctgcaaa catggctagg aaagagatag ccatcaaaga atgagagaaa 7740 gggagggtat gtcatatttg aatctgtcag cagtcacagg tgccaggaat agtataaggc 7800 caaggttaga tttctcacct gcagaaataa attagctttt ctttatatct accccctgtt 7860 caagcaggtc ggaccttcgg caagtccaac aaaaagattt ctttctattt gtaaattact 7920 gtcgaggtac agagtgttgc tttgcacgac acctttgggt gaacctcagt cttagaacta 7980 gtgctttgtc aatcatttaa tggccaaggc aaggcattgt cttgggcact atttgattga 8040 cattgtggtc tttctaagac cctcggcttc aataaacagc attgacaagc atgtacgtat 8100 ctcatgcacg ctgtataaaa atagctttgg ttttacatat tttccc 8146 //