ID AF312381; SV 2; linear; genomic RNA; STD; VRL; 4379 BP. XX AC AF312381; XX DT 31-JAN-2001 (Rel. 66, Created) DT 06-MAY-2003 (Rel. 75, Last updated, Version 3) XX DE Oropouche virus medium RNA segment, complete sequence. XX KW . XX OS Oropouche virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Peribunyaviridae; Orthobunyavirus. XX RN [1] RP 1-4379 RX DOI; 10.1016/S0168-1702(00)00234-3. RX PUBMED; 11172919. RA Wang H., Beasley D.W., Li L., Holbrook M.R., Barrett A.D.; RT "Nucleotide sequence and deduced amino acid sequence of the medium RNA RT segment of Oropouche, a Simbu serogroup virus: comparison with the middle RT RNA of Bunyamwera and California serogroup viruses"; RL Virus Res. 73(2):153-162(2001). XX RN [2] RP 1-4379 RX DOI; 10.1016/S0168-1702(01)00262-3. RX PUBMED; 11451484. RA Saeed M.F., Wang H., Suderman M., Beasley D.W.C., Travassos da Rosa A., RA Li L., Shope R.E., Tesh R.B., Barrett A.D.T.; RT "Jatobal virus is a reassortant containing the small RNA of Oropouche RT virus"; RL Virus Res. 77(1):25-30(2001). XX RN [3] RP 1-4379 RA Saeed M.F., Wang H., Li L., Beasley D.W., Barrett A.D.; RT ; RL Submitted (11-OCT-2000) to the INSDC. RL Microbiology and Immunology, University of Texas Medical Branch, 301 RL University Blvd., Galveston, TX 77555, USA XX RN [4] RC Sequence update by submitter RP 1-4379 RA Wang H., Beasley D.W.C., Li L., Holbrook M.R., Barrett A.D.T.; RT ; RL Submitted (28-JUN-2001) to the INSDC. RL Pathology, University of Texas Medical Branch, 301 University Blvd., RL Galveston, TX 77555-0609, USA XX DR MD5; cdaf42b4f352ea9081816c0ef9056b2e. DR EuropePMC; PMC479050; 15280501. XX CC On Jul 5, 2001 this sequence version replaced gi:12620284. XX FH Key Location/Qualifiers FH FT source 1..4379 FT /organism="Oropouche virus" FT /segment="medium" FT /strain="Tr9760" FT /mol_type="genomic RNA" FT /db_xref="taxon:118655" FT CDS 40..4302 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q99ER2" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR005168" FT /db_xref="InterPro:IPR014413" FT /db_xref="InterPro:IPR026400" FT /db_xref="UniProtKB/TrEMBL:Q99ER2" FT /protein_id="AAG60643.2" FT /translation="MANLIIISMVLSIAYGHPLSTSQIGDRCFAGGNLFKEMNLSVGLG FT EICVKDDISIVKSTTVFSKNKLALEATTKFYRSFIVKDWSECNPVLDKFGNFMVLSVDD FT NGHTIPKMYTCRAACDIRLNKDNAEIILSSTKLNHFEIVGTTSTSGWFKNTITNNLEHT FT CEHVTVNCGQKSVKFHACFRQHRGCVRFFKGTYMPHSMIEAMCVNIELIILTLYIFAAI FT IFALIITKSYVAYLLLPLFYPATWFYGKVYKKINSCPNCLLASHPFTSCPKICICGSRF FT SCTEALKVHRMGKDCLGYKSLSKARQMCKSKSWSFTAAILTGLILMEFISPIAGERMYK FT LEELADEFIKLTEQVNILEREMEVLKQSIIVMFAIILVLLLFENMIFNRLFRIFYRSCS FT MCGLIHYRPGLKIDLTKTNRCGSCICGFDEQQSSGFEYEIFLTDMHVQKESCKFSPRVN FT HFRNTKALLFALVICATIYTVYADEDCLSKDIKITYQELHNCIGPKIMGDTCVSKSELY FT SDLFSKNLVTEYDKKYFEPDTVNDQFNKIEFAQDAHRMILLERILYKTECEMLSLKKNS FT GPYNVAWRTHLKNHNIDLCSRHNYKMICQCINAHSMCKNTDIDYNKEIETYYKSNAAAY FT RAGLNTIMDTLKTAFRGLTKVLIENYIEKDDSDALKALFSNITDSVQDNYQMIGILKFA FT SKLLDINLGRSTRSAHHSIMTNEIPKSNPFTDYSYSNVNIKECMSPESLKCFKKRDSTP FT HTNHLLCKIDNKYKAFDWPEIETIQKGQKLCLGDSHCNLEFTAITADRIMSLTNCYKES FT FTAQPADMQAGIKKCSADEIGECTTLEDKTWPIVFCSGKYYYSDSKEHAKDGSINNYCL FT TNKCSEQRFPIHENWFKKCNWDKTHKEFRPYETNNYNDITSYRKAIESEIGTDLMTHHY FT KPTKNLPHVVPRYHSIDVQGTESTEGIINGFIQNTIPAISGLDVGYHLNFKGNQLFDIV FT IFVKKAVYKAQYQKAYTTGPSISINIEHNERCTGHCPEKIPAKEGWLTFSKEHTSSWGC FT EEYGCLAIDTGCLYGSCQDVIRPELDVYKKIGSEASLIEICITLPHETYCNDMDILEPI FT IGDKLSASFQNTQTNQLPTLIAYKKGKIYTGQINDIGNTALQCGSIQVINGSTIGTGSP FT KFDYICHAMRRKDVIVRKCFNDNYQSCTRLEKRNDLIPYRKGDVIEVSKTGSNMGQMTF FT KIELGDINYKIFTKSVDLQMSGICAGCIDCAEGISCSINAEVPAETVCHCKTNCEDFIN FT NIVFSPQIKNYNIKVHCKSKVEKITAHICGRDIDLQLTVKPYNQKIDLSQLDESNYIRE FT EDLQCGTWLCKVQKEGIDIMFKGLFSGLGRYWTILIYSIIGVVIIVILVYILLPIGRLL FT KAFLIRHEIEYAMEQKIK" FT mat_peptide 88..957 FT /product="G2 protein" FT /note="putative" FT mat_peptide 958..1482 FT /product="NSm protein" FT /note="putative" FT mat_peptide 1483..4299 FT /product="G1 protein" FT /note="putative" XX SQ Sequence 4379 BP; 1580 A; 717 C; 826 G; 1256 T; 0 other; cggaattcag tagtgtacta ccagcaacaa acagtgacaa tggcgaattt aataattatt 60 tcgatggttc tgagcattgc ctatgggcat ccgctctcaa caagtcaaat tggtgaccgc 120 tgttttgctg gtggtaacct cttcaaggag atgaacttga gtgtaggact tggcgaaata 180 tgtgttaaag atgacatatc tattgttaag agtactactg tttttagcaa gaataaactg 240 gctcttgaag caactacaaa attttataga tcctttatcg taaaagactg gtctgagtgc 300 aatccagtgc tagacaaatt tggaaatttt atggttttaa gtgttgatga taacggccat 360 acaataccta aaatgtatac atgtagagca gcatgtgata ttagattaaa caaagataat 420 gccgaaataa tattatcgtc aacaaaactc aaccactttg aaattgtcgg gacaacttcg 480 acatcaggct ggtttaagaa cacaataaca aacaacctag aacatacatg cgagcatgta 540 actgtaaatt gtggtcagaa atcagtaaaa ttccatgcat gctttagaca acataggggt 600 tgtgtaagat tttttaaagg gacatatatg ccacactcaa tgatcgaagc aatgtgcgtt 660 aacatagagc taataattct gacattatat atctttgctg caattatatt tgcactaatt 720 ataacaaaga gttatgtagc atacctgctc ctgccgttat tttatccagc aacgtggttt 780 tatggaaagg tttataaaaa gattaattct tgcccaaact gtctacttgc atctcaccct 840 ttcaccagct gccccaaaat ctgtatatgc ggttctaggt ttagttgcac agaagctctt 900 aaggtgcata gaatgggtaa ggactgctta ggctataaat ctctaagcaa agctagacag 960 atgtgtaaat cgaaaagctg gtccttcaca gcagctatat taactggatt aatattgatg 1020 gaattcatct caccaattgc aggagagaga atgtataagc ttgaggagtt ggccgatgag 1080 tttataaagc taacagagca ggtgaatatt ctagaaagag aaatggaagt cttgaagcag 1140 tcaataattg ttatgtttgc aatcatttta gtattgttac tttttgaaaa tatgatattc 1200 aaccggcttt tccgcatttt ttatcgttct tgctccatgt gcggcttgat acattataga 1260 ccaggactca aaatcgattt aaccaaaact aacagatgtg gcagttgcat ctgtggattc 1320 gacgagcagc agtcgtctgg ttttgaatat gaaatatttt taacggatat gcatgtccaa 1380 aaagaatcat gcaaattcag tccaagagta aaccacttta ggaatactaa agctttatta 1440 tttgcacttg taatctgtgc taccatatat acagtttatg cagatgaaga ttgcttatct 1500 aaagatatta aaataacata tcaagagttg cacaactgca taggtccaaa gataatgggc 1560 gatacttgtg tatcaaagag tgaattgtat tctgatttat tctcaaaaaa tctagtcaca 1620 gaatatgata aaaaatattt tgaacctgat actgtaaatg atcaattcaa caagatagaa 1680 tttgcccaag atgcacatag aatgatacta ttagaaagaa tactttacaa gacagaatgt 1740 gaaatgctaa gcttaaaaaa gaacagtgga ccttataatg ttgcctggcg cacacattta 1800 aaaaatcata atatagactt atgcagtagg cacaactaca aaatgatatg tcagtgtatt 1860 aatgcacact ctatgtgtaa gaatacagac atagattata acaaagagat cgaaacatat 1920 tacaaaagca atgctgcagc ctatagagct ggcctgaaca ccataatgga cacattaaaa 1980 acagcattca gagggcttac aaaggtccta attgaaaatt atatagaaaa agatgactct 2040 gatgctctta aggccttatt tagtaatatt actgattctg tccaggacaa ctatcagatg 2100 attggaatat tgaaatttgc tagtaagcta ttagatatta accttggtag atccacccgc 2160 tcagctcatc attctataat gacaaacgaa attcccaaat ctaatccttt tactgattac 2220 agttattcta atgttaatat aaaggaatgc atgtcgccag agagcttgaa atgttttaag 2280 aagagagaca gtacaccgca tacaaaccac ctgctttgca agatagacaa caaatataaa 2340 gcatttgact ggccagagat agaaacaatt caaaaaggtc aaaaattatg ccttggtgac 2400 agtcattgca acttggaatt tacagccata actgcagaca gaattatgtc attaactaac 2460 tgttataaag aatctttcac tgcgcaacca gcagatatgc aggctggaat taaaaaatgc 2520 tcggctgatg aaataggaga atgtacaaca cttgaagaca agacatggcc aattgtattc 2580 tgtagcggca aatattacta ctctgatagc aaggagcatg ccaaagacgg ttctatcaac 2640 aattattgtt taaccaacaa atgttctgaa caacgtttcc caatacatga aaattggttc 2700 aaaaaatgta attgggacaa gacccacaaa gaatttaggc catatgagac aaataactat 2760 aatgatataa cttcttatag aaaagcaata gaatctgaga taggaacaga tttgatgaca 2820 caccattata agcccacaaa gaaccttcca catgttgtac caaggtatca tagtatagat 2880 gtacaaggta cagaatcaac agagggtatt atcaatggtt tcatacaaaa tacaatacct 2940 gctattagtg gtctagatgt tggttatcat ctgaatttca aaggcaatca gttatttgac 3000 atagttattt ttgtaaaaaa agctgtatat aaagcacagt accagaaagc atacaccaca 3060 ggtcctagca tatccataaa tattgaacat aacgaaagat gcacaggcca ctgccccgaa 3120 aagattcctg caaaagaagg ttggttaaca ttttctaaag agcatactag ttcttgggga 3180 tgtgaagaat atggctgtct tgctatagat acaggctgtt tatatggctc ttgtcaagat 3240 gtcatacgcc cagaattaga tgtttataag aagattggca gtgaggcatc actgatagaa 3300 atatgtataa ctttgcctca tgaaacttat tgcaatgata tggacatatt agaaccgatt 3360 ataggagata aattaagtgc atcctttcag aatacacaga ctaatcaact tccgaccctt 3420 atagcttata aaaagggaaa aatatacaca ggtcaaatca atgatattgg aaacacagca 3480 ttgcagtgcg gctcaatcca agtaatcaat ggatcaacta tcggaactgg cagcccaaaa 3540 tttgattata tatgccatgc tatgagaagg aaagatgtta tcgtaaggaa gtgtttcaat 3600 gacaactatc agtcgtgcac taggctagaa aagcgaaatg acttgattcc ttatagaaaa 3660 ggcgatgtca tcgaagtatc aaaaacagga tcgaacatgg gccaaatgac atttaaaata 3720 gaactaggtg atattaacta taaaatattt actaaatcag tagatcttca aatgtctggc 3780 atttgtgctg ggtgcattga ctgtgctgaa ggtatttcat gctctataaa tgctgaagtg 3840 ccagccgaaa cagtctgcca ttgcaaaaca aactgtgaag attttataaa caatatagtg 3900 ttttcaccgc aaatcaagaa ttacaatata aaagtccact gtaaatctaa ggttgaaaaa 3960 ataacagcac atatctgtgg gagagacatt gatttacagt tgacagttaa gccatacaat 4020 cagaagatag acttgtcgca gttagatgaa tcaaattaca taagggaaga ggacctccag 4080 tgtggaacat ggttatgtaa ggtgcaaaaa gaggggattg atattatgtt taaaggatta 4140 ttttcaggct tagggagata ttggaccata ttaatttatt caattatagg tgtggtaata 4200 attgtgatat tggtttatat cctattgccc ataggtcgcc ttttaaaagc attcctaatc 4260 agacatgaaa tagaatatgc catggagcag aaaatcaagt agttttggtt aaaaagggta 4320 ggcaagttta aaatcaggta taaataaaat tcatataaat aaagtcaaaa attgttgtt 4379 //