ID   AF312316; SV 1; linear; genomic RNA; STD; VRL; 878 BP.
XX
AC   AF312316;
XX
DT   09-MAY-2001 (Rel. 67, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Infectious salmon anemia virus isolate RPC/NB-877 NS2 and NS1 genes,
DE   complete cds.
XX
KW   .
XX
OS   Salmon isavirus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Insthoviricetes;
OC   Articulavirales; Orthomyxoviridae; Isavirus.
XX
RN   [1]
RP   1-878
RX   PUBMED; 11411649.
RA   Kibenge F.S., Garate O.N., Johnson G., Arriagada R., Kibenge M.J.,
RA   Wadowska D.;
RT   "Isolation and identification of infectious salmon anaemia virus (ISAV)
RT   from Coho salmon in Chile";
RL   Dis. Aquat. Org. 45(1):9-18(2001).
XX
RN   [2]
RP   1-878
RA   Kibenge F.S.B., Kibenge M.J.T., McKenna P.K.;
RT   "Genome segment 8 of infectious salmon anaemia virus";
RL   Unpublished.
XX
RN   [3]
RP   1-878
RA   Kibenge F.S.B., Kibenge M.J.T., McKenna P.K.;
RT   ;
RL   Submitted (11-OCT-2000) to the INSDC.
RL   Pathology and Microbiology, Atlantic Veterinary College, UPEI, 550
RL   University Avenue, Charlottetown, P.E.I. C1A 4P3, Canada
XX
DR   MD5; bc6cf38abecf2396f6e31dda2e16cc66.
DR   EuropePMC; PMC4702313; 26732772.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..878
FT                   /organism="Salmon isavirus"
FT                   /segment="8"
FT                   /host="Atlantic salmon"
FT                   /isolate="RPC/NB-877"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /db_xref="taxon:55987"
FT   CDS             12..602
FT                   /codon_start=1
FT                   /product="NS2"
FT                   /note="non structural protein 2; ORF3"
FT                   /db_xref="PDB:5WCO"
FT                   /db_xref="UniProtKB/TrEMBL:Q910W0"
FT                   /protein_id="AAK51694.1"
FT                   /translation="MNESQWIQKHLPCMREANPKPRELIRHALKKKKRPEVVYAMGVLL
FT                   TLGGESGLTVEFPVPEGKTVKVKTLNQLVNGMISRATMTLYCVMKDPPSGSMATLMRDH
FT                   IRNWLKEESGCQDADGGEEKWAMVYGMISPDMAEEKTMLKELKTMLHSRMQMYALGASS
FT                   KALENLEKAIVAAVHRLPASCSTEKMVLLGYLK"
FT   CDS             26..751
FT                   /codon_start=1
FT                   /product="NS1"
FT                   /note="non structural protein 1; ORF2"
FT                   /db_xref="UniProtKB/TrEMBL:Q91TF4"
FT                   /protein_id="AAK51693.1"
FT                   /translation="MDTKTSTMHERSKPKTTGADQTCLEEEKETRGGLRNGSSSDTGGR
FT                   ERTDRGVSCSRRKNCEGQNLEPIGERNDQSSDDDPLLCDERSTIGKHGNADERPHQELA
FT                   EGGIRMPGRGWWRGKMGNGVWYDFTRHGRGEDDAEGAENNATQQDADVCSGCKFESPRE
FT                   FRKGHRRCSSSTSGILLDREDGASGVPEVSFKERMEAEKKKLKELDDKIYKLRRRLRKM
FT                   EYKKMGINRETDKLEDSIQ"
XX
SQ   Sequence 878 BP; 295 A; 155 C; 239 G; 189 T; 0 other;
     ggctatctac catgaacgaa tcacaatgga tacaaaaaca tctaccatgc atgagagaag        60
     caaacccaaa accacgggag ctgatcagac atgccttgaa gaagaaaaag agaccagagg       120
     tggtttacgc aatgggagtt cttctgacac tggggggaga gagcggactg accgtggagt       180
     ttcctgttcc agaaggaaaa actgtgaagg tcaaaacctt gaaccaattg gtgaacggaa       240
     tgatcagtcg agcgacgatg accctctact gtgtgatgaa agatccacca tcgggaagca       300
     tggcaacgct gatgagagac cacatcagga actggctgaa ggaggaatca ggatgccagg       360
     acgcggatgg tggagaggaa aaatgggcaa tggtgtatgg tatgatttca cccgacatgg       420
     cagaggagaa gacgatgctg aaggagctga aaacaatgct acacagcagg atgcagatgt       480
     atgctctggg tgcaagttcg aaagccctag agaatttaga aaaggccatc gtcgctgcag       540
     ttcatcgact tccggcatcc tgctcgacag agaagatggt gcttctgggg tacctgaagt       600
     aagcttcaaa gaaagaatgg aagcggagaa gaagaaactg aaagagctgg acgacaagat       660
     ctacaagcta aggagaagat tgaggaagat ggagtacaag aaaatgggga tcaaccgaga       720
     aaccgacaaa ttggaggact ctatacaata aattgacctt ctcaatacct atttttgtta       780
     tgctataatt ggtgatgaat ctaaagattt cttgttaatt caattctatg tgttgtatgg       840
     gatattttgg ttgtgtactt gatcattata caaaagaa                               878
//