ID AF308158; SV 2; linear; genomic RNA; STD; VRL; 6614 BP. XX AC AF308158; XX DT 02-JUL-2001 (Rel. 68, Created) DT 27-APR-2004 (Rel. 79, Last updated, Version 3) XX DE Cactus virus X, complete genome. XX KW . XX OS Cactus virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6614 RX DOI; 10.1094/PDIS.2001.85.2.229A. RX AGRICOLA; IND23224289. RA Liou M.-R., Hung C.-L., Liou R.-F.; RT "First report of Cactus virus X on Hylocereus undatus (Cactaceae) in RT Taiwan"; RL Plant Dis. 85(2):229-229(2001). XX RN [2] RP 1-6614 RX DOI; 10.1007/s00705-003-0251-1. RX PUBMED; 15098117. RA Liou M.R., Chen Y.R., Liou R.F.; RT "Complete nucleotide sequence and genome organization of a Cactus virus X RT strain from Hylocereus undatus (Cactaceae)"; RL Arch. Virol. 149(5):1037-1043(2004). XX RN [3] RP 1-6614 RA Liou M.-R., Hung C.-L., Liou R.-F.; RT ; RL Submitted (25-SEP-2000) to the INSDC. RL Plant Pathology, National Taiwan University, #1, Sec. 4, Roosevelt Road, RL Taipei 106, Taiwan XX RN [4] RC Sequence update by submitter RP 1-6614 RA Liou M.-R., Hung C.-L., Liou R.-F.; RT ; RL Submitted (02-OCT-2003) to the INSDC. RL Plant Pathology, National Taiwan University, #1, Sec. 4, Roosevelt Road, RL Taipei 106, Taiwan XX DR MD5; 24ed65ea70df2fdd4f1c0b272c85bcb2. XX CC On Oct 3, 2003 this sequence version replaced gi:14582653. XX FH Key Location/Qualifiers FH FT source 1..6614 FT /organism="Cactus virus X" FT /host="Hylocereus undatus" FT /mol_type="genomic RNA" FT /db_xref="taxon:112227" FT CDS 85..4716 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1; 175 kDa protein; contains methyltransferase FT domain at N-terminus, putative NTP-binding domain of RNA FT helicase, and core domain of RNA-dependent RNA polymerase FT at C-terminus" FT /db_xref="GOA:Q91ND9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q91ND9" FT /protein_id="AAK69579.1" FT /translation="MARVREVFSSITDSSLKAVIQEEAYKTIQTQLQLAATINPYSQPT FT DAADVLENLGIITNPLAIEAHTHGAAKAIENDMYNIVANYLPKGNPVTFYYMKKGKLGK FT FRRGPHQNDRFVNSHFEPKDIARYPEETVVEHLESTPCTTKLDFMGDTLHFWTPKQLLT FT LFNFSPKLTTLYATIVLPIEATHRLPSLHPAIYTLKYFGDFFMYIPGGHAGASYTHHQK FT QLAWLFAGQVSGLGIKLTIQILESKGANHLLIIQRGDLLTPPLRTFGSDSPYVQIPPIF FT LPKDHNMSQPIPTVFAMKMFMYTKSLKEVTPRDLYAKMRQLLPDKELAKFSPSHIVHMM FT NYFFLLGKLDSVNHFENLLSGSIVRRTFKPLIVWWQHFKEKIKGPADFTKICKAIQWTN FT LDLTYKVQSFTLSTWENFFSKQIMPEGKNDEDFSDFWDPNSYNPLDSVDDLNAEQLKAW FT DFLQQRNTGAYPEPKFHDDPLENKSNKEKCTAEQRNFTEGPQTSQASCSTPHNDSQAPN FT EEKPETQPHITPPKVFTTPHGVVVRPFTADRDCEETWEHFIMGHLRLCDKVGQRQVTLY FT ARNGKIKTYSYGNVTHKAQPWPAELTAIAKALDVPEEHDHCLFQVFQQGAAINFHSDDE FT PLIQPGSPITTLSIGHCELLTRDKSNKKIHKQLLSGPIIYTMPSGFQETHQHSVRSLQK FT NRLSITFRTSVHCNQEDTLPWHKWLPILSAAGFKGNQRQVNPNGGSLILPISDIKKLPT FT IETGDPGLLEKIKKIHRSPTPFTYDPLRAKAFGSDVKNLRVGALLRHQSKEWLESFSRR FT TEKDSRSLALTVIHGAGGSGKSQALQDFLRANPDNRITVVLPTNELRLDWVRKLPQAHP FT SSLKTFEKSLLTPASSTTIMDDYSKLPAGFIEAYIANNPGLECLILTGDSKQSHHHEPN FT DGAMTSKLSPFTETASLHCRYYLNATHRNRQDLANMLGVYSEVEGRTNITMDTTILPGR FT HLLVPSMFKKQAYGELGHKVSTYAGCQGITANEIQILIDSDTPMCSQQVMYTALSRAVH FT AIHFVNTGINNDAFWNKLAATPYLAAFLRLVREEKTKEHQPTEEGPSAPPAPETHFPVE FT NESTFFDKVTDSMPEEHEKELFHTSDGFSNCVQTEDPIIQMFPHQQAKDETLFWATIEA FT RLKITSPEKDFTEFISKVHIGDILFQNYKLAMGLPKEPIAFDERLWNCCADEVQKTYLS FT KPLHMLQNGQARQSPDFDPKMISLFLKSQWVKKIEKLGQPRIKAGQTIASFQQEAVMLY FT GTMARYMRRVREVFQPKNIMINCERTPEELTSWAAEHWNFNRNSYANDYTAFDQSQDGA FT MLQFEILKARHHSIPEVYIEGYLDLKCSSMTFLGILKIMRLTGEGPTFDANTECNIAFA FT HTKLKIPIGTAQLYAGDDCALATVPEDKPSFKMIETEVSLKAKPVIKRQVQGEWAEFCG FT MLVTPLGVIKDPIKTWAALKLAEKKRRHERHEGQLLKEMLGLVYQHKDPLHSIFSESNP FT WPTKLTVRKIIKAGGGRVFSTFD" FT CDS 1427..1831 FT /codon_start=1 FT /product="15 kDa protein" FT /note="ORF6" FT /db_xref="UniProtKB/TrEMBL:Q91ND8" FT /protein_id="AAK69584.1" FT /translation="MILMLSSSKPGTSCNSATPALTLSPNSMTIPLKTSLTRRNALRNK FT GTSLRALRLVRPPAPPHTMTRRPPMKRNQRRSPTSPHPRFSPHPTGWWYALSPLIATAR FT KPGNISSWAISGCATKLVRGRSLSMPEMER" FT CDS 2945..3163 FT /codon_start=1 FT /product="8 kDa protein" FT /note="ORF7" FT /db_xref="UniProtKB/TrEMBL:Q91ND7" FT /protein_id="AAK69585.1" FT /translation="MPHTATGRTWRTCSESTQRLRDAPTSPWTPPFFPAGICSSHPCSR FT NKHTGSWDTRFQPTPGVKESRRMRSKY" FT CDS 4716..5405 FT /codon_start=1 FT /product="25 kDa protein" FT /note="ORF2; contains putative NTP-binding domain of RNA FT helicase" FT /db_xref="GOA:Q91ND6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:Q91ND6" FT /protein_id="AAK69580.1" FT /translation="METLTALLIANGYTRTDLPISKPLVIHAVAGAGKTTLIRQFLHQH FT SATNAQTLGTPDKPNLSRKMIRQFSMPKANHFNILDEYCAQPLKGSWDAVFADPLQHPD FT YALEPHFIKETSHRLGPSTCELISSLGILIYPDSEDQVVTRKGVFESELFGVVIALDEA FT IFQLASRHGLKPLCPKATIGLQFPVVTVLSSLALEQVEDSTALYIALTRHTKELHVRCP FT TEADATT" FT CDS 5368..5700 FT /codon_start=1 FT /product="12 kDa protein" FT /note="ORF3" FT /db_xref="GOA:Q91ND5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q91ND5" FT /protein_id="AAK69581.1" FT /translation="MSGAPLRLTPPPDHTRTLFPLTLGLGLSLVVFALTRSTLPSVGDS FT SHSLPHGGWYRDGTKTVFYSGPKKTAINWSPPIFVLFLTLALYVSYLFESRSRAGSCSH FT CGSNHT" FT misc_feature 5521..5544 FT /note="Region: conserved hydrophobic domain" FT CDS 5630..5824 FT /codon_start=1 FT /product="7 kDa protein" FT /note="ORF4" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q91ND4" FT /protein_id="AAK69582.1" FT /translation="MFLTYLSLGVVLGLAVIAGLTTLNTPSCLIVLSGDQTVVKGCEHI FT GNLADVITALNNRLSFNKL" FT CDS 5840..6514 FT /codon_start=1 FT /product="coat protein" FT /note="ORF5; 24 kDa protein" FT /db_xref="GOA:Q91ND3" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q91ND3" FT /protein_id="AAK69583.1" FT /translation="MSTTGVQSSQSSGPRSTPQSGPFQTLSSSQLAALSLGVTSSLLPS FT PAELVSISQALTTLGASATNLTPLSLEIVNYCFDNGSSPETVFKGDSTVLQMPSPKSPC FT HHPITTLRQFCRYFAKIIWNYRVSKNLPPAAWEAWAYKPEQKFAAFDFFDGVLNEAALN FT PIDGLVRVPNEAERLANQTNRNVHLFESNAQKNRALTTSALVTKGLQGSESPRIQFLPG FT PE" XX SQ Sequence 6614 BP; 1793 A; 1983 C; 1402 G; 1436 T; 0 other; gaaaaccaac ccaacaccaa accaactcac tcacacctat ccaactcaga agggagctac 60 cgttaccggt atatattctg tgggatggcc cgtgtgcgtg aagttttctc atcgatcact 120 gactcatctc ttaaagccgt aattcaggag gaggcctata agaccatcca aactcaatta 180 caactcgcgg ccacaatcaa cccatactca caacccaccg acgctgctga tgttttagag 240 aacttaggaa tcatcactaa cccattggcc attgaagccc atacccatgg ggcggcaaag 300 gccattgaaa atgacatgta taacatagtt gctaattatc tgcccaaggg gaatccagtc 360 acattctact acatgaagaa aggcaagctc ggaaaattta ggagaggccc acaccagaat 420 gatcgttttg tcaactccca ttttgagccc aaggacatag cccgctaccc agaggaaacg 480 gttgtggaac accttgagtc cactccctgc actacgaagc tggatttcat gggcgacact 540 ctccacttct ggacgccaaa gcaactacta actctcttca actttagtcc caaactaacc 600 actctctacg ctactatagt cttgcctata gaggctacac atagactacc ctctctacac 660 cccgccatat atactctgaa gtacttcggg gacttcttta tgtacatccc tggtggacac 720 gcaggcgcct cctacaccca tcaccagaaa caactagcat ggctttttgc cggtcaagtg 780 tctggcctag gcattaagct caccatacag attctggaga gcaagggtgc aaatcacctg 840 ctcataattc aaaggggtga tctgctcact cctcccctga ggactttcgg ctctgactcc 900 ccctatgtgc aaatcccacc tatcttcctc cccaaagacc ataatatgtc ccagcccatc 960 cccacggtgt ttgcaatgaa aatgttcatg tataccaagt ccctgaaaga ggtcactccg 1020 cgtgatcttt atgcgaaaat gagacagctg ctcccggata aagaactggc taaattctcc 1080 ccaagccaca ttgttcacat gatgaactat ttcttcctgc tcggaaaatt agactctgtt 1140 aatcactttg aaaacttgct atcagggtca atcgtccgca ggacatttaa gccactcatc 1200 gtctggtggc agcattttaa ggaaaaaatc aaggggcctg ctgattttac aaagatctgc 1260 aaagcgattc agtggactaa tctcgacctc acatacaaag tccaatcctt cactctcagc 1320 acatgggaga atttcttctc aaagcagatc atgccagaag ggaagaatga cgaggacttt 1380 tcggacttct gggacccgaa ctcctacaac cccttagact ctgtggatga tcttaatgct 1440 gagcagctca aagcctggga cttcctgcaa cagcgcaaca ccggcgctta ccctgagccc 1500 aaattccatg acgatcccct tgaaaacaag tctaacaagg agaaatgcac tgcggaacaa 1560 aggaacttca ctgagggccc tcagactagt caggcctcct gctccacccc acacaatgac 1620 tcgcaggccc ccaatgaaga gaaaccagag acgcagcccc acatcacccc acccaaggtt 1680 ttcaccacac cccacggggt ggtggtacgc cctttcaccg ctgatcgcga ctgcgaggaa 1740 acctgggaac atttcatcat gggccatctc aggctgtgcg acaaagttgg tcagaggcag 1800 gtcactctct atgccagaaa tggaaagata aagacctaca gttacggaaa tgtaacccac 1860 aaggctcaac cctggcccgc tgagctcacg gccatcgcca aagcccttga tgtgcctgag 1920 gagcacgacc actgcctctt ccaggtcttc caacagggag ctgcaatcaa ctttcattct 1980 gacgacgagc cactgattca accaggctca cccatcacca ctcttagcat tgggcattgt 2040 gaactgctca ccagggataa atccaacaaa aaaattcaca agcaactcct ctccggcccc 2100 atcatctaca ccatgccatc aggcttccag gagacccacc aacactcagt gcgttctcta 2160 caaaagaacc gactctccat cactttccgc accagtgtac actgcaacca agaggacacc 2220 ctcccatggc acaagtggct gcccattctg agtgcagccg ggttcaaagg caatcagaga 2280 caggtcaatc ccaatggcgg gtcgctcatt ctcccaatct ccgacatcaa aaaactgccc 2340 acaattgaga ctggtgaccc aggcttgcta gaaaaaatca agaaaatcca taggagtccc 2400 acacccttca catatgaccc actccgagcc aaggcttttg gttcagatgt caagaatctc 2460 agagtaggcg ccctactccg acaccagtcc aaagaatggc ttgagagctt ttccagaagg 2520 actgagaaag acagccgctc tcttgctcta acggtcattc atggtgctgg gggtagcggc 2580 aagtctcagg cactgcagga cttcctccgg gccaacccag acaatcgcat aacggtggtc 2640 ctgcccacca atgagctgag actcgactgg gtacgcaaac tgccacaagc ccatccttcc 2700 tctctaaaga cctttgagaa gagtctgctc acgccagcca gttctactac tatcatggac 2760 gattactcca agcttcccgc gggattcatt gaggcctaca tcgcaaacaa ccccggattg 2820 gagtgtctga tactcacagg ggattcaaag caaagccacc accatgagcc taacgacgga 2880 gccatgacca gcaaactgtc gccattcact gagaccgcgt cactccactg cagatactac 2940 ctcaatgcca cacaccgcaa caggcaggac ctggcgaaca tgctcggagt ctactcagag 3000 gttgagggac gcaccaacat caccatggac accaccattc ttcccggcag gcatctgctc 3060 gtcccatcca tgttcaagaa acaagcatac ggggagttgg gacacaaggt ttcaacctac 3120 gccgggtgtc aaggaatcac ggcgaatgag atccaaatac tgattgactc tgacacccca 3180 atgtgctccc agcaggtcat gtacaccgcc ctcagtaggg ccgtgcacgc cattcacttc 3240 gtcaacacag ggataaacaa tgatgccttc tggaacaagc tggcagccac gccctatctc 3300 gcggcatttc tgaggttggt ccgggaagag aagacgaaag agcatcaacc cacagaagag 3360 gggcccagtg caccgcccgc tcccgagacc cacttcccag tggagaacga gtccacattc 3420 tttgacaagg tcacagacag catgccggag gagcatgaga aagaactctt tcacactagc 3480 gatggtttca gcaattgcgt tcagactgaa gatcccatca tccaaatgtt cccccaccaa 3540 caagcaaaag atgagactct cttctgggca acaattgagg ctcgactgaa aataacgagc 3600 cccgagaaag acttcaccga gttcatctcc aaggtacaca ttggggacat tctcttccag 3660 aattacaagc ttgccatggg gctcccgaaa gagccaatcg cattcgacga acgtctttgg 3720 aactgctgcg cggacgaggt gcagaagacc tacctgtcta agccactgca catgcttcaa 3780 aacggacagg ctaggcagtc ccctgacttt gaccccaaaa tgatcagcct cttcctcaag 3840 tcacaatggg ttaagaagat tgagaaactt ggccaaccgc gcattaaggc tgggcagacc 3900 atcgcctctt tccaacaaga ggcggtcatg ctttacggaa caatggcccg atacatgagg 3960 cgtgtccgcg aggtttttca gcctaagaat atcatgatca actgcgagag gacccctgaa 4020 gagcttacca gctgggcagc cgagcactgg aacttcaatc gcaattcata tgccaacgac 4080 tacacggctt ttgaccagtc tcaggacggt gcgatgctcc aatttgaaat tctcaaagct 4140 aggcaccact ccatcccgga agtgtacatt gagggctacc tggacttgaa atgctcatcc 4200 atgaccttcc ttggcatatt gaaaatcatg cgactcactg gagaggggcc cactttcgac 4260 gccaacactg aatgcaacat cgccttcgcc cacaccaagc tgaaaatacc aatcggcact 4320 gctcagctct acgcgggtga cgactgcgct ttggctactg tcccagagga taagccaagc 4380 ttcaaaatga ttgaaaccga ggtctccctc aaagccaaac cggtcatcaa aaggcaggtc 4440 caaggggaat gggcagaatt ttgtgggatg ttagttaccc cccttggcgt catcaaggac 4500 cccatcaaga cctgggcggc actgaagctt gccgaaaaga agaggcgaca tgaaagacat 4560 gagggacagt tattgaaaga aatgcttggc cttgtctacc aacacaagga ccctctccac 4620 tcaatcttct cagaaagcaa tccatggccc accaaattaa ccgttcgaaa gatcatcaaa 4680 gcaggtggag gccgtgtttt ctcaactttt gactgatgga gacgctaact gccctactaa 4740 tcgctaacgg atacactagg actgacttgc ccatttccaa gcccttagtc atccatgctg 4800 tggccggtgc aggaaagacc accctgatta ggcaatttct acaccaacac tcggccacga 4860 atgctcagac gctgggcacg ccagacaagc ccaacctctc taggaagatg atccgacaat 4920 tctccatgcc caaggccaac catttcaaca tcctcgatga gtactgtgca cagcctctga 4980 aaggaagttg ggatgcggtg ttcgccgacc ctctccagca tcctgactat gccctggaac 5040 cccatttcat caaagagacc tcccaccgac ttggtccaag cacatgcgag ctgatctcca 5100 gccttggaat cctcatttat cctgactcag aggatcaagt agtcacaagg aaaggggttt 5160 tcgagtctga actcttcggt gtagtcatag cccttgacga agccatcttc caactcgcga 5220 gcaggcacgg actcaaaccg ctctgcccca aagcaaccat tggcctccaa tttcctgtcg 5280 tgacagttct atcttcccta gccctcgagc aggtcgaaga cagcacagcg ctctacattg 5340 cgctcacgcg tcacacaaaa gaactccatg tccggtgccc cactgaggct gacgccacca 5400 cctgatcaca ctagaaccct ttttccacta accctaggct taggactatc gctagtagta 5460 ttcgcactga ctaggtccac attacccagt gtcggggatt cttcccacag tttaccacac 5520 ggaggctggt atcgtgacgg cacgaaaaca gtcttctact caggccctaa gaaaacggcc 5580 attaactgga gtccacccat ctttgtcctt ttcctgacct tagccctcta tgtttcttac 5640 ctatttgagt ctaggagtcg tgctgggtct tgcagtcatt gcgggtctaa ccacacttaa 5700 cacccctagt tgtctgatcg tcttgtcggg tgaccagact gttgtcaagg gctgtgaaca 5760 cattggcaat ctcgccgacg tcattacggc acttaataac cgcttaagtt tcaacaaatt 5820 gtgaaaatca agactaatca tgtctactac tggagtccag tcttctcagt cctccggacc 5880 ccgctccact cctcagtccg gacctttcca aaccttgtcc tcctcccagc ttgcggccct 5940 ctcactcggg gtcaccagct ctcttctacc ttccccagct gagctagtca gcatctcaca 6000 agccctgacc accctaggcg cgtctgccac caacctcact ccactatcac tagaaatagt 6060 taattactgc tttgacaacg ggtcttcacc agaaacagtc ttcaagggtg actcaaccgt 6120 gctccagatg ccgtctccaa agtcgccatg ccatcaccca attaccactc tgagacaatt 6180 ctgcagatac tttgcaaaga tcatctggaa ttatcgagtt tcaaagaatc tccctccagc 6240 ggcatgggaa gcctgggctt acaaacccga gcaaaagttt gctgccttcg acttcttcga 6300 cggcgttctc aatgaggcgg ccctcaaccc catagatgga cttgtgcgtg tacctaacga 6360 ggctgaacga ctcgccaacc aaactaatcg caacgtccat ctcttcgaga gcaacgcaca 6420 aaagaacaga gcccttacca cctcggctct tgtcaccaag gggctccaag gttcagagtc 6480 tccaaggatc caatttctcc caggccctga gtagtttaga aatgaacaag gctcccgcag 6540 tagcctccca ccgggttcca actgtgccta tcctgcttaa cttaataagc ctagccttct 6600 gttttaatgc aagt 6614 //