ID AF278534; SV 1; linear; genomic RNA; STD; VRL; 3332 BP. XX AC AF278534; XX DT 02-JUL-2001 (Rel. 68, Created) DT 05-JAN-2012 (Rel. 111, Last updated, Version 4) XX DE Prunus necrotic ringspot virus isolate CH57 segment RNA1, complete DE sequence. XX KW . XX OS Prunus necrotic ringspot virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3332 RX DOI; 10.1007/s007050170151. RX PUBMED; 11402868. RA Di Terlizzi B., Skrzeczkowski L.J., Mink G.I., Scott S.W., Zimmerman M.T.; RT "The RNA 5 of Prunus necrotic ringspot virus is a biologically inactive RT copy of the 3'-UTR of the genomic RNA 3"; RL Arch. Virol. 146(4):825-833(2001). XX RN [2] RP 1-3332 RA Scott S.W., Zimmerman M.T.; RT ; RL Submitted (14-JUN-2000) to the INSDC. RL Plant Pathology & Physiology, Clemson University, P.O. Box 340377, Clemson, RL SC 29634-0377, USA XX DR MD5; 525663625a81ec5a5c3315d0e96b3d8a. DR EuropePMC; PMC5478126; 28632759. XX FH Key Location/Qualifiers FH FT source 1..3332 FT /organism="Prunus necrotic ringspot virus" FT /segment="RNA1" FT /host="cherry" FT /isolate="CH57" FT /mol_type="genomic RNA" FT /db_xref="taxon:37733" FT CDS 30..3167 FT /codon_start=1 FT /product="replicase p1" FT /db_xref="GOA:Q91NQ1" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91NQ1" FT /protein_id="AAK69474.1" FT /translation="MDPESLSQLLVSTLQKQCADETSTVGKVFSERGVALVERSIPKAE FT GERLNISFALSAEQKSLLSRNFPGRDIHFAQRDSSSHSFAAAHRLLETDYIYKCFGTTE FT ESVIDLGGNFVSHIKQKRYNVHSCCPLLDDRDGARFTERLISLKTYLRTHKEERHEADY FT CECRFEECPRRADYVMAVHAVSDLPITDLCAALTKKGTKKMILSIMMDPNMLLRDVGEI FT PNFNVRWEIDRTEDIIRFDFIDAPCLGYQHKFSVLQQYLTTNAVIVGDKAAYRVERKSD FT FGGVFIVDITAVAGYRPGMVVGGTRSCAWSTLIRNKTVVHTVDGEDHWWYDVTRRSKIL FT VDTKVLTKVLEASFRQFKPNVEPESMIQNIATMLSSSTNYTVINGVTLQAGESLPYGDY FT VAIATTIYVRTKRMYDSIRTNIDRLNETRIVSIKDETQGEVYGKLGNVLGNLFAPTATT FT QIIAGPKGREDAYELHPKSWSDEVRNFFYCCVGRQGVGHTLLSDPDLFVPLEVVLQAKW FT TGGSVLTVKTLFDDVVKPEYDRVEEELQRVRDDRDKSEKLQKAILTVAKWIEAHPDGKL FT PKGLGEVAALVPDMVDLRESVVAVEPKAVVNKYASEIQEAITYYELEADISAKKLRSVG FT EHCNWSKKFISTIWAGDESRRVYIPHTDSWLGPPNVPKPEPTGQYERGMTADGYVLMAW FT SGSSGQKFDGPLQVDAVCRKELSRYPAIFFDKSCEFAANLRLLPALREALTVEAKFTRR FT LMDGVAGCGKTTKILNECRMCNDQPDLVLTSNRSSAMELREKLPGSQLLRSTRVRTSDS FT YLMNPKRPSSVRVIFDECFLQHAGCVYAAASLAGAEELVLFGDTKQIPFVSRIPHFRLK FT DHLVSADEKVMSNLTYRCPADATMALSKWFYRRNVKTANTTLRSMSVKPIVSVSQIDRD FT FDLYMTHTQAEKHTLIASGVVPKDKVFTTAEAQGKTESRAALVRLSRTSMSLFTGKDPL FT MGPCHSLVAMSRFKRQFVYFTVADTDSDDLIAKAIRDVSNSSDDTVSSYIHRDHKI" XX SQ Sequence 3332 BP; 908 A; 638 C; 863 G; 923 T; 0 other; gtttttagtt cgtggttgaa ctatttatca tggatccaga atctttgtca cagttgcttg 60 tttctacttt gcaaaaacaa tgcgctgatg aaacctcgac agtggggaag gtattctccg 120 agagaggtgt agctctagtc gagcgatcta ttcctaaggc cgagggtgag cgacttaata 180 taagttttgc tttgagtgcc gagcaaaagt ctttgttgtc tcgaaatttt cccggtagag 240 acattcattt cgcacaacga gactcttcga gtcatagttt tgcggcagcc cataggttgt 300 tagaaaccga ttatatttat aagtgcttcg gcacgactga agaatcggtg attgatcttg 360 ggggaaattt tgtttctcac ataaagcaaa agaggtataa tgtgcacagc tgttgcccac 420 ttttggacga tcgcgatggt gccagattta ccgaacgttt gatctcattg aagacctact 480 tgcgaacgca caaggaggaa agacatgagg cagactattg cgaatgccgc ttcgaggagt 540 gcccgagaag ggccgattat gtgatggctg tgcacgctgt tagcgacttg cctattacag 600 atctttgtgc tgcactgact aagaaaggga cgaagaagat gatcctttcc ataatgatgg 660 acccgaatat gttgttgagg gatgttggtg aaatcccgaa cttcaacgta cgttgggaga 720 tagacagaac cgaagatatt ataaggttcg attttatcga tgctccgtgt ttgggctacc 780 aacataagtt ttctgtacta cagcaatatc tcactacgaa tgccgttata gtaggggata 840 aggcagctta tcgcgttgag cgtaaaagcg atttcggcgg tgtgtttatt gtagacatca 900 cagccgttgc tgggtataga ccaggtatgg tagtgggtgg tactagatct tgcgcgtggt 960 ctaccctgat ccgaaataaa accgtcgtac atactgttga cggtgaagat cattggtggt 1020 atgatgttac ccgtagatcg aagatccttg tggatactaa ggtattgacg aaggttttag 1080 aagcaagctt ccgacaattt aaaccgaatg tggagcctga gtcgatgatc caaaacatcg 1140 cgacgatgtt gtcttcttcg acgaattaca cagtgattaa tggtgttacg ctccaagctg 1200 gtgagagtct accttatggc gattacgtag ccatagccac cactatttat gtaaggacca 1260 agaggatgta tgattcgata cgaaccaaca tcgatagatt aaacgaaacc cgaatagtct 1320 cgataaaaga cgaaactcag ggtgaagttt acggtaagtt gggtaatgtt ctaggcaatt 1380 tgtttgcgcc gactgcaact actcaaatta tcgcaggtcc aaagggtaga gaggatgctt 1440 atgagttgca tccgaaatct tggtctgacg aggttagaaa ttttttctac tgttgtgtcg 1500 gtagacaagg agtcggccac actctattga gtgacccaga tttgtttgta ccactcgaag 1560 ttgttttgca ggctaaatgg actggtggtt cggtcttgac tgtaaaaacc ttgtttgacg 1620 atgtagtcaa accggaatac gatagggtcg aagaggaact tcagcgcgtg cgagatgaca 1680 gagataagtc agagaaacta cagaaagcga ttttgaccgt cgcgaagtgg atagaggctc 1740 accccgatgg taaattacct aagggcttgg gcgaagtagc agcgctagtt cccgacatgg 1800 tagacttgcg tgagtctgtc gtagctgttg aaccaaaggc cgttgtgaat aagtatgcat 1860 ccgagattca ggaagcgatt acttattatg agctagaggc tgatatttcc gcgaagaaat 1920 tgaggtctgt gggagaacat tgcaattggt caaagaaatt tatctcgact atttgggcgg 1980 gagatgagtc ccgacgtgtg tatatcccgc acaccgacag ttggttagga ccacctaatg 2040 ttccgaaacc agaaccgact ggtcaatacg aaaggggaat gactgccgat gggtacgtgc 2100 tcatggcctg gagtggttcc agtggtcaaa aatttgacgg accattgcaa gtcgacgcag 2160 tttgtcgtaa agaattgtcg cgttaccccg cgatattttt cgataaatcg tgcgagtttg 2220 ccgctaattt aagattgttg ccggctttac gagaggcact tactgtggaa gcgaagttca 2280 cacgaaggtt gatggatggt gtggctggat gcggaaaaac caccaaaatc ctcaacgaat 2340 gtaggatgtg taacgatcaa cctgaccttg ttttaactag caacaggtcc tccgcgatgg 2400 agttaagaga gaagttacca ggtagtcaat tgttacgatc aactcgagtc aggacatcag 2460 attcttatct gatgaatccg aagagacctt catcggtgcg agtaattttt gacgagtgtt 2520 ttttacaaca cgctggttgt gtttatgcgg ctgctagttt ggcaggagct gaggagttag 2580 tgttatttgg tgacacgaaa caaattccct ttgtatcaag gattcctcac ttccgattga 2640 aagaccattt ggtgtccgct gacgaaaagg taatgtcgaa tttgacttac cgatgtcctg 2700 ctgacgctac tatggctctt tcgaaatggt tctaccgtag gaacgtaaag acagcaaaca 2760 ctacacttag aagcatgagt gtcaagccta ttgtgtccgt cagtcagatt gaccgggact 2820 ttgatctgta tatgacgcat acacaggcgg agaagcacac tttaattgct agtggtgtgg 2880 ttccgaaaga taaggttttc acgacagccg aggctcaggg aaaaaccgaa agtagagctg 2940 ctctagttcg attatcaaga actagtatga gtctgtttac tggtaaagac ccgttgatgg 3000 gtccttgtca cagtttggtc gctatgtctc gatttaagag acagtttgtc tactttactg 3060 tggctgatac agattcagac gatttgattg ccaaggcaat cagagatgtt agtaacagta 3120 gtgacgatac agtcagtagt tacatacatc gagatcataa gatctagagt gagatgaacg 3180 cactcgattc ccagattatg gaagaaccgt accaccgtgt ggatttatcg gttatctctt 3240 ttgaagttgt ttccttactt cagtgttctg agagattacc tgcttacgca gatgcctaca 3300 acgagaagtt gtagatgccc cgttagggaa gc 3332 //