ID AF274349; SV 1; linear; genomic DNA; STD; VRL; 2756 BP. XX AC AF274349; XX DT 11-JUL-2000 (Rel. 64, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Tomato leaf curl Sri Lanka virus segment A pre-coat protein (V2), coat DE protein (V1), C3 protein (C3), C2 protein (C2), replication-associated DE protein (C1), and C4 protein (C4) genes, complete cds. XX KW . XX OS Tomato leaf curl Sri Lanka virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2756 RA Shih S.L., Nakhla M.K., Maxwell D.P., Green S.K., Hanson P.; RT ; RL Submitted (01-JUN-2000) to the INSDC. RL Virology Unit, Asian Vegetable Research and Development Center, P.O.Box 42, RL Shanhua, Tainan, Taiwan XX DR MD5; a4a1977e2bc6579f2d4013ee080980b6. DR EuropePMC; PMC2170441; 17963488. XX FH Key Location/Qualifiers FH FT source 1..2756 FT /organism="Tomato leaf curl Sri Lanka virus" FT /segment="A" FT /host="tomato plant" FT /mol_type="genomic DNA" FT /country="Sri Lanka:Bandarawela" FT /note="isolated in May 1997" FT /db_xref="taxon:223352" FT CDS 197..481 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q9IF72" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9IF72" FT /protein_id="AAF82369.1" FT /translation="MLAIKYLQLIENTYSPDSLGYDLIRDLISVVRAKSYVQASSRYDH FT FRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQNV" FT CDS 303..1073 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q9IF71" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9IF71" FT /protein_id="AAF82370.1" FT /translation="MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRATKGKEWA FT NRPMNRKPMFYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT IGKRFCAKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1070..1474) FT /codon_start=1 FT /gene="C3" FT /product="C3 protein" FT /db_xref="GOA:Q9IF70" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9IF70" FT /protein_id="AAF82371.1" FT /translation="MDLRTGEHITAVQAMNGVSISQVPNPLYFKILNHDNRPFNSNTDL FT ITVRVQFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFIKNLDVISINN FT VLRAVDHVLWNVLTQTMYVQSSNIIKFNLY" FT CDS complement(1215..1619) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /db_xref="GOA:Q9IF69" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9IF69" FT /protein_id="AAF82372.1" FT /translation="MRSSSPSQGHYTQVPIKVLHRQAKKTIRRKRIDLECGCSYYLSIN FT CRNHGFTHRGTHNCSSGNEWRQYLAGPKSPIFQDPQPRQPAIQLEHRPDNCKGSVQPQP FT SESVGDTQMFSNIPNLDDLTASDWSFLKGI" FT CDS complement(1516..2607) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /note="rep protein" FT /db_xref="GOA:Q9IF68" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9IF68" FT /protein_id="AAF82373.1" FT /translation="MSPPKRFQIFAKNYFLTYPQCSLTKEEALSQLQNLNTPTNKLFIR FT ICRELHDNGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDVLDFGIFQVDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFH FT NLNANLDRIFTPPVEVYISPFSLSSFDQVPDELEEWAAINVVSAAARPIRPIGIIVEGD FT SRTGKTMWARSIGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRNWALKNAIFVTLAGPL FT YSGTNQGSPQASQEDNQEEENRP" FT CDS complement(2157..2450) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9IF67" FT /protein_id="AAF82374.1" FT /translation="MGNLIYTCSSNSKENSNVKTTDSSTWYPQPDQHISIQTFRELKAR FT RMSNPIWKKTETSLILEFSKSMEDQLEEVASLQTTHMPRQSIQGLNHRHSIF" XX SQ Sequence 2756 BP; 742 A; 557 C; 600 G; 857 T; 0 other; accggatggc cgcgcccctt tctgtctcta tcattgaccc caccactaaa tcatgtccac 60 caatcatatg tcacactgaa agcttaatta tttatttttg tccttatata aacttagtca 120 ccaagtttta ctgttatgta aaatgtagga tccactctta aatgattttc ctgaaaccgt 180 acacggattc aggtgtatgc ttgctataaa atacttgcag ctgatagaaa atacgtattc 240 ccctgactca ttgggatacg atctgatacg tgatttaatt tccgtcgtcc gggctaagag 300 ctatgtccaa gcgtccagca gatatgatca tttccgggcc cgtctcgaag tatcgccgac 360 ttctgagctc aatcagccca tacagcaagc gtgctgctgt ccgcattgtc cgcgccacaa 420 agggaaagga atgggccaac aggcccatga atcggaagcc catgttctac agaatgtata 480 gaagccctga cgtcccaaag ggctgtgaag gcccatgtaa ggtccagtcc ttcgagtcta 540 ggcatgatgt agttcatatt ggtaaggtta tgtgtattag tgatgttact aggggtacag 600 gtctgaccca taggataggt aagcgtttct gtgctaagtc tgtctatgtt ctgggaaaga 660 tatggatgga tgagaacatc aaaaccaaga accacactaa cagtgttatg tttttccttg 720 ttcgtgatcg tcgtcccgtt gacaagcctc aagattttgg tgatgtgttt aacatgttcg 780 ataacgagcc tagtaccgca actgtcaaaa atatgcacag ggatcgttac caggttctcc 840 ggaagtggca tgctactgtt actggtggtc agtatgcgtc taaggagcag gctcttgtga 900 agaaatttgt tagggttaat aattatgttg tgtataacca gcaagaggct ggcaagtatg 960 agaatcatag tgagaatgcg ttgatgttgt atatggcatg tactcatgcc tcaaaccctg 1020 tgtatgctac tctgaaaata cggatctatt tctacgattc ggtgacaaat taataaagat 1080 taaattttat tatgttagaa ctttgtacat acattgtttg cgttaataca ttccataata 1140 catgatcgac agccctaagt acattgttta tgctaattac atctaaattt ttgataaatt 1200 gcaacacttg ggttctaaat acccttaaga aatgaccagt ctgaggctgt aaggtcgtcc 1260 agattcggaa tgttagaaaa catttgtgta tccccaacgc tttccgaagg ttgtggttga 1320 actgaaccct tacagttatc aggtctgtgt tcgagttgaa tggccggttg tcgtggttga 1380 ggatcttgaa atatagggga tttgggacct gcgagatact gacgccattc attgcctgaa 1440 ctgcagttat gtgttcccct gtgcgtaaat ccatggttcc tgcagttgat gcttaggtaa 1500 tatgaacaac cacactcaag gtctattctc ttcctcctga ttgtcttctt ggcttgcctg 1560 tggagaacct tgattggtac ctgagtatag tggccctgcg agggtgacga agatcgcatt 1620 cttgagtgcc caatttctta gtgcggaatt cttttcttcg tccaagaact ctttatagct 1680 ggagttgggc cctggattgc ataggaatat agtgggaatg cctcctttaa tttgaactgg 1740 ctttccgtat ttggtattgc tttgccagtc cctttgggcc cccatgaact ctttaaagtg 1800 cttcaaataa tgcggatcga catcatcaat gacgttatac catgcgtcat ttgaatacac 1860 tcttgggctt aagtccaaat ggccgcacaa gtaattgtgt gggccgatgg acctagccca 1920 cattgttttg cccgtacgac tatcaccctc aacaataatt cctatgggtc ttataggccg 1980 cgcagcggca ctgacaacgt taatcgccgc ccactcttca agttcatcag gaacttgatc 2040 aaaagaagaa agagaaaaag gagaaatata aacctccact ggaggtgtaa agatcctatc 2100 taaattagca tttaaattat gaaactgtaa tacataatct ttgggagctt tctcccttaa 2160 aatattgagt gccgatgatt tagaccctga attgattgcc tcggcatatg cgtcgtttgc 2220 agactggcaa cctcctctag ctgatcttcc atcgacttgg aaaattccaa aatcaaggac 2280 gtctccgtct ttttccatat aggatttgac atccgacgag cttttagctc cctgaatgtt 2340 tggatggaaa tgtgctgatc gggttgggga taccaagtcg aagaatctgt tgttttgaca 2400 tttgaatttt ccttcgaatt ggatgagcac gtgtagatga ggttccccat tatcgtgtaa 2460 ttctctgcaa attcttatga ataatttgtt tgttggagta tttagatttt gtaattggga 2520 aagtgcttct tcttttgtaa gagaacactg aggatatgtt agaaaataat tttttgcaaa 2580 tatttgaaaa cgttttggtg gagacatatt gacttggtca attggtactc aacaaactcg 2640 gctatgctat cggtactatg gtactcaata tatacctgag tactaaatgg cataattgta 2700 attttgagga aatttccaat ctaattccca ccaaaagcgg ccatccgtct aatatt 2756 //