ID AF274010; SV 1; linear; genomic RNA; STD; VRL; 8115 BP. XX AC AF274010; XX DT 29-SEP-2000 (Rel. 65, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Foot-and-mouth disease virus C strain C-S8 clone MARLS, complete genome. XX KW . XX OS Foot-and-mouth disease virus - type C OC Viruses; Riboviria; Picornavirales; Picornaviridae; Aphthovirus. XX RN [1] RP 1-8115 RX PUBMED; 9658076. RA Baranowski E., Sevilla N., Verdaguer N., Ruiz-Jarabo C.M., Beck E., RA Domingo E.; RT "Multiple virulence determinants of foot-and-mouth disease virus in cell RT culture"; RL J. Virol. 72(8):6362-6372(1998). XX RN [2] RP 1-8115 RA Baranowski E., Sevilla N., Verdaguer N., Ruiz-Jarabo C.M., Beck E., RA Domingo E.; RT ; RL Submitted (31-MAY-2000) to the INSDC. RL Centro de Biologia Molecular 'Severo Ochoa' (CSIC-UAM), Facultad de RL Ciencias, Universidad Autonoma de Madrid, Madrid 28049, Spain XX DR MD5; f0e4aa8917af190fe04bab1a69e942b0. DR EuropePMC; PMC1797574; 17151116. DR EuropePMC; PMC1851977; 17432933. DR EuropePMC; PMC2515104; 18637173. DR EuropePMC; PMC2836666; 20080701. DR EuropePMC; PMC4163634; 24961997. DR RFAM; RF00210; IRES_Aptho. XX FH Key Location/Qualifiers FH FT source 1..8115 FT /organism="Foot-and-mouth disease virus - type C" FT /strain="C-S8" FT /mol_type="genomic RNA" FT /clone="MARLS" FT /note="from cell culture" FT /db_xref="taxon:12116" FT 5'UTR 1..1038 FT CDS 1039..8022 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q9E2G4" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004080" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008739" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR015031" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="InterPro:IPR038765" FT /db_xref="UniProtKB/TrEMBL:Q9E2G4" FT /protein_id="AAG16748.1" FT /translation="MNTTDCFIAVVNAIKEVIALFLSRTAGKMEFTLHDGEKKVFYSRP FT NNHDNCWLNTILQLFRYVDEPFFDWVYNSPENLTLEAIKQLEELTGLELREGGPPALVI FT WNIKHLLHTGIGTASRPSEVCMVDGTDMCLADFHAGIFMKGREHAVFACVTSNGWYAID FT DGDFYPWTPDPSDVLVFVPYDQEPLNEGWKASVQRKLKGAGQSSPATGSQNQSGNTGSI FT INNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLF FT GALLADKKTEETTLLEDRILTTRNGHTTSTTQSSVGVTFGYATAEDSTSGPNTSGLETR FT VHQAERFFKMALFDWVPSQNFGHMHKVVLPHEPKGVYGGLVKSYAYMRNGWDVEVTAVG FT NQFNGGCLLVALVPEMDDISDREKYQLTLYPHQFINPRTNMTAHITVPYVGVNRYDQYK FT QHRPWTLVVMVVAPLTTNTAGAQQIKVYANIAPTNVHVAGELPSKEGIFPVACSDGYGN FT MVTTDPKTADPVYGKVYNPPRTALPGRFTNYLDVAEACPTFLMFENVPYVSTRTDGQRL FT LAKFDVSLAAKHMSNTYLAGLAQYYTQYTGTINLHFMFTGPTDAKARYMVAYVPPGMDA FT PDNPEEAAHCIHAEWDTGLNSKFTFSIPYISAADYAYTASHKAETTSVQGWVCVYQITH FT GKADADALVVSASAGKDFELRLPVDARKQTTTTGESADPVTTTVENYGGETQVQRRHHT FT DVAFVLDRFVEVTVSDNQHTLDVMQAHKDNIVGALLRAATYYFSDLEIAVTHTGKLTWV FT PNGAPVSALNNTTNPTAYHKGPVTRLALPYTAPHRVLATAYTGTTTYTASARGDSAHLT FT TTHARHLPTSFNFGAVKAETITELLVRMKRAELYCPRPILPIQPTGDRRKQQLVAPAKQ FT LLNFDLLKLAGDVESNPGPFFFSDVRSNFSKLVETINQMQEDMSTKHGPDFNRLVSAFE FT ELASGVKAIRAGLDEAKPWYKLIKLLSRLSCMAAVAARSKDPVLVAIMLADTGLEILDS FT TFVVKKISDSLSSLFHVPAPAFSFGAPILLAGLVKVASSFFRSTPEDLERAEKQLKARD FT INDIFAILKNGEWLVKLILAIRDWIKAWIASEEKFVTMTDLVPGILEKQRDLNDPSKYK FT DAKEWLDNTRQVCLKNGNVHIANLCKVVAPAPSKSRPEPVVVCLRGKSGQGKSFLANVL FT AQAISTHLTGRTDSVWYCPPDPDHFDGYNQQTVVVMDDLGQNPDGKDFKYFAQMVSTTG FT FIPPMASLEDKGKPFSSKVIIATTNLYSGFTPKTMVCPDALNRRFHFDIDVSAKDGYKI FT NNKLDIIKALEDTHANPVAMFHYDCALLNGMAVEMKRLQQDVFKPQPPLQNVYQLVQEV FT IERVELHEKVSSHPIFKQISIPSQKSVLYFLIEKGQHEAAIEFFEGMVHDSIKEELRPL FT IQQTSFVKRAFKRLKENFEIVALCLTLLANIVIMIRETHKRQKMVDDAVNEYIEKANIT FT TDDQTLDEAEKNPLETSGASTVGFRERTLPGQKARDDVNSEPAQPTEEQPQAEGPYAGP FT LERQRPLKVRAKLPRQEGPYAGPMERQKPLKVKARAPVVKEGPYEGPVKKPVALKVKAK FT NLIVTESGAPPTDLQKMVMGNTKPVELILDGKTVAICCATGVFGTAYLVPRHLFAEKYD FT KIMLDGRALTDSDYRVFEFEIKVKGQDMLSDAALMVLHRGNRVRDITKHFRDVARLKKG FT TPVVGVINNADVGRLIFSGEALTYKDIVVCMDGDTMPGLFAYKAATKAGYCGGAVLAKD FT GADTFIVGTHSAGGNGVGYCSCVSRSMLLKMKAHIDPEPHHEGLIVDTRDVEERVHVMR FT KTKLAPTVAHGVFNPEFGPAALSNKDPRLNEGVVLDEVIFSKHKGDTKMSAEDKALFRR FT CAADYASRLHSVLGTANAPLSIYEAIKGVDGLDAMEPDTAPGLPWALQGKRRGALIDFE FT NGTVGPEVEAALKLMEKREYKFACQTFLKDEIRPMEKVRAGKTRIVDVLPVEHILYTRM FT MIGRFCAQMHSNNGPQIGSAVGCNPDVDWQRFGTHFAHYRNVWDVDYSAFDANHCSDAM FT NIMFEEVFRTEFGFHPNAEWILKTLVNTEHAYENKRITVEGGMPSGCSATSIINTILNN FT IYVLYALRRHYEGVELDTYTMISYGDDIVVASDYDLDFEALKPHFKSLGQTITPADKSD FT KGFVLGHSITDVTFLKRHFHMDYGTGFYKPVMASKTLEAILSFARRGTIQEKLISVAGL FT AVHSGPDEYRRLFEPFQGLFEIPSYRSLYLRWVNAVCGDA" FT mat_peptide 1039..1641 FT /product="leader protease" FT mat_peptide 1642..1896 FT /product="VP4 protein" FT mat_peptide 1897..2550 FT /product="VP2 protein" FT mat_peptide 2551..3207 FT /product="VP3 protein" FT mat_peptide 3208..3834 FT /product="VP1 protein" FT mat_peptide 3835..3882 FT /product="2A protease" FT mat_peptide 3883..4344 FT /product="2B protein" FT mat_peptide 4345..5298 FT /product="2C protein" FT mat_peptide 5299..5757 FT /product="3A protein" FT mat_peptide 5758..5826 FT /product="VPg1 protein" FT mat_peptide 5827..5898 FT /product="VPg2 protein" FT mat_peptide 5899..5970 FT /product="VPg3 protein" FT mat_peptide 5971..6609 FT /product="3C protease" FT mat_peptide 6610..8019 FT /product="3D polymerase" FT 3'UTR 8023..8115 XX SQ Sequence 8115 BP; 2009 A; 2312 C; 2077 G; 1717 T; 0 other; ttgaaagggg gcgctagggt ctcaccccta acatgccaac gacagtccct gcattgcact 60 ccacacttac gttgtgcgta cgcggggccc gatggaccat cgttcaccca cctacagctg 120 gactcacgac accgcgtggc cattttagct ggattgtgcg gacgaacacc gcttgcgctt 180 ctcgcgtgac cggttagtac tcttaccacc ttccgcctac ttggttgtta gcgctgtcct 240 gggcactcct gttgggggcc gttcgacgct ccacgggttc ccccgtgcgg caactacggt 300 gatggggccg tttcgcgcgg gctgatcgcc tggtttgttt cggctgtcac ccgaaacccg 360 cctttcataa gttttaccgt ctgtcccgac gttaaaggga ggtaaccaca agcatactgc 420 cgccttcccc ggcgttaacg ggatgcaacc gtaagacaca ccttcatccg gaagtaaaac 480 ggctgcgtca catagttttg cccgttttca cgagaaacgg gacgtctgcg cacgaaacgc 540 gccgtcgctt gaggaagact tgtacaaaca cgatctaagc aggtttcccc aactgacaca 600 aaacgtgcaa cttgaaactc cgcctggtct ttccaggtct agaggggtaa cactttgtac 660 tgtgtttggc tccacgctcg atccactggc gagtgttagt aacagcactg ttgcttcgta 720 gcggagcatg acggccgtgg gaactcctcc ttggtaacaa ggacccacgg ggccaaaagc 780 cacgcccaca cgggcccgtc atgtgtgcaa ccccagcacg gcgactttac tgcgaaaccc 840 actttaaagt gacattgaaa ctggtaccca cacactggtg acaggctaag gatgcccttc 900 aggtaccccg aggtaacacg cgacactcgg gatctgagaa ggggactggg gcttctataa 960 aagcgctcgg tttaaaaagc ttctatgcct gaataggtga ccggaggtcg gcacctttcc 1020 tttacaatta atgaccctat gaatacaact gactgtttta tcgctgtggt aaacgccatc 1080 aaagaggtaa tagcactttt cctatcacgg actgcaggaa aaatggaatt cacgctacac 1140 gacggcgaga aaaaggtctt ttactccaga cccaacaacc acgacaactg ctggttgaac 1200 accatccttc agttgttcag gtacgtcgat gaacctttct tcgactgggt ctacaattcg 1260 cccgagaacc tcacgcttga agccatcaag caactggagg aactcacagg gttggagttg 1320 cgcgagggtg gaccgcccgc ccttgtgatt tggaacatca aacacctgct ccacactggc 1380 atcggtaccg cttcgcgacc cagcgaggtg tgtatggtgg acggcacgga catgtgtctt 1440 gctgactttc atgcaggcat tttcatgaaa ggacgggaac acgctgtctt tgcgtgtgtc 1500 acctccaacg ggtggtacgc gattgatgac ggggacttct acccatggac gccagacccg 1560 tctgatgtcc tggtatttgt tccatacgac caagagccac tcaatgaagg gtggaaggcc 1620 agcgttcagc gaaagctcaa gggagctggg caatccagcc cagcgaccgg ttcacagaac 1680 caatctggca acactggcag cataattaac aactactata tgcagcagta ccaaaactcc 1740 atggacacac aactcggcga caacgccatc agtggaggct ccaatgaagg ctccacggac 1800 acaacctcta cacacacaac caacacccag aacaacgact ggttttccaa acttgccagt 1860 tcagccttca gcggtctttt cggcgccctt ctcgctgata agaaaacgga ggaaaccact 1920 ctccttgaag accgcattct cactacccgt aacgggcaca cgacctcgac aacccagtcg 1980 agcgtcggag tcacattcgg gtatgcaacc gctgaagata gcacgtctgg acccaataca 2040 tctggtctag agacgcgcgt tcatcaggca gagaggtttt tcaaaatggc actttttgat 2100 tgggttcctt cacaaaattt tggacacatg cacaaggttg ttctgcccca cgaaccaaaa 2160 ggtgtttacg ggggtctcgt caagtcatac gcgtacatgc gcaatggctg ggacgtcgag 2220 gtgaccgctg ttggaaacca gttcaacggc ggttgcctcc tggtggcgct cgtccccgag 2280 atggacgaca tcagtgacag ggaaaagtac caactaactc tttaccccca ccagttcatc 2340 aacccacgca ccaacatgac ggcacacatc actgtgccct atgtgggtgt caacaggtat 2400 gaccagtaca aacagcacag gccctggacc ctcgtggtca tggttgtcgc gccactcacc 2460 acaaacacag caggtgccca acagatcaaa gtgtatgcca acatagcccc aaccaacgtg 2520 cacgtggcgg gtgagctccc ctccaaggag gggatcttcc ccgttgcgtg ttctgacggt 2580 tacggcaaca tggtgacaac tgacccgaaa acggctgacc ccgtctacgg gaaggtttac 2640 aacccccctc ggactgctct gccggggcgg ttcacaaact acctggatgt tgccgaggct 2700 tgtcccacct tcctgatgtt cgagaacgta ccttacgtct caacacgaac tgacgggcaa 2760 aggctactgg ccaagttcga cgtgtcgctg gcagcgaaac acatgtcaaa cacctacttg 2820 gccggtttgg cccagtacta cacacagtac accgggacaa tcaacctaca cttcatgttc 2880 actgggccga ccgacgcgaa agctcggtac atggtggcgt acgtgccccc tggcatggac 2940 gcaccagaca acccagaaga ggctgcccac tgcatacacg cagaatggga cactggtctg 3000 aactccaagt tcacgttttc aatcccgtac atctcggccg ctgactacgc gtacaccgcg 3060 tcccacaagg ctgaaacaac aagtgtacag gggtgggtct gtgtgtacca aatcactcac 3120 ggcaaggcag acgccgacgc gctcgtcgtc tccgcatcag cggggaaaga ctttgagctc 3180 cggctacctg tggacgctag aaaacaaact acgaccactg gtgaatctgc tgaccccgtc 3240 accactaccg ttgagaacta cggaggagag actcaggtcc aacgtcgcca ccacaccgac 3300 gttgccttcg ttcttgaccg gtttgtggag gtcacagtgt cggataacca acacacactc 3360 gacgtgatgc aggcacacaa agacaatatc gtgggcgcgc ttcttcgcgc agccacgtac 3420 tatttttctg atttggaaat agcagtgacc cacactggga agctcacatg ggtgcccaac 3480 ggtgcaccag tttctgcact taacaacaca accaatccca ctgcctacca caagggcccg 3540 gtgactcgac tggctctccc atacaccgcg ccacaccgtg tgttggctac ggcgtacact 3600 ggcactacga cctacaccgc cagtgcacgc ggggattcgg ctcacctaac gacgacgcat 3660 gctcggcatt tgccgacatc gttcaacttt ggtgcagtta aagcagaaac aatcactgag 3720 ttgctcgtgc gcatgaagcg tgctgaactc tattgtccta ggccgattct tccgattcag 3780 ccaacgggcg atagacgcaa gcaacagctc gtcgcacctg caaaacaact gctgaacttt 3840 gacctgctca agttggctgg agatgtggag tccaaccctg ggcccttctt cttctctgac 3900 gttaggtcaa acttttccaa actggtggag acaattaacc agatgcagga ggacatgtcc 3960 acaaagcacg gacctgactt taaccggttg gtgtctgctt ttgaggaact ggccagtgga 4020 gtgaaagcca tcagggccgg tctcgatgag gccaaaccct ggtacaagct tattaagctc 4080 ctgagccgct tgtcgtgcat ggccgctgta gcagcgcggt caaaggaccc agtccttgtg 4140 gccatcatgc tggctgacac cggtctcgag attctggaca gcacgtttgt cgtgaagaag 4200 atctccgact cgctctccag tctctttcac gtgccggccc ccgccttcag cttcggagcc 4260 ccgattctgt tggccgggtt ggtcaaggtc gcctcgagtt tcttccggtc cacacccgaa 4320 gaccttgaga gagcagagaa acaactcaaa gcacgtgaca tcaacgacat cttcgccatt 4380 ctcaagaacg gcgagtggct ggtcaagctg atccttgcca tccgcgactg gattaaggca 4440 tggatcgcct cagaagagaa gtttgtcacc atgacagacc tggtgcctgg tatccttgaa 4500 aaacagcggg acctcaacga cccaagcaag tacaaggatg ccaaggaatg gctcgacaac 4560 acgcgccaag tgtgtttgaa gaacgggaac gtccatattg ccaacctttg caaagtggtc 4620 gccccagcac ccagcaagtc gagacccgag cccgtggtcg tttgcctccg cggcaagtct 4680 ggccagggca agagtttcct tgcgaacgtg cttgcacaag caatctccac ccacctcacc 4740 ggcaggaccg attctgtttg gtactgcccg cctgaccctg accacttcga cggttacaac 4800 cagcagaccg ttgttgtgat ggacgatttg ggccagaacc ctgacggcaa ggacttcaag 4860 tacttcgccc aaatggtttc aaccacgggg ttcatcccgc ccatggcatc acttgaggac 4920 aaaggcaaac ccttcagcag taaggtcatc attgcaacca ccaacctgta ctcgggcttc 4980 accccgaaga ccatggtgtg tcctgatgct ctgaaccgga ggtttcactt tgacatcgac 5040 gtgagcgcca aggacgggta caaaatcaac aacaaattgg acatcatcaa agcacttgaa 5100 gacacccacg ccaatccagt ggcaatgttt cactacgact gtgcccttct caacggcatg 5160 gctgttgaaa tgaagagatt gcaacaggat gtgttcaagc ctcaaccacc cctccagaac 5220 gtgtaccaac ttgttcagga ggtgattgag cgggtcgagc ttcacgagaa agtgtcaagc 5280 cacccaattt ttaagcaaat ctcaatacct tcccaaaaat ctgtgttgta cttcctcatt 5340 gagaaaggcc aacacgaggc agccattgaa ttctttgagg gcatggtaca cgactccatt 5400 aaggaggaac tccggcccct catccaacaa acttcatttg tgaaacgtgc ttttaagcgc 5460 ctgaaggaga actttgaaat tgttgcactg tgcctaacac ttttggccaa cattgtcatc 5520 atgatccgcg agactcacaa gagacagaag atggtggatg atgcggtgaa tgagtacatc 5580 gagaaagcaa acatcaccac cgatgaccag acacttgacg aggcggaaaa gaaccctctg 5640 gaaaccagtg gtgccagcac cgttggcttc agagagagaa ctcttccagg tcagaaggcg 5700 cgcgatgacg tgaactctga gcccgcccag ccgactgaag agcaaccgca agctgaagga 5760 ccctacgccg ggccactcga gcgtcagaga cctctgaaag tgagagccaa gctcccgcga 5820 caagagggac cttacgccgg tccgatggag agacagaagc cgctgaaagt gaaagcaaga 5880 gccccggtcg tcaaggaagg accttatgaa ggaccggtga agaagcctgt cgctttgaaa 5940 gtgaaagcta agaatttgat tgtcactgag agtggtgccc ccccgactga cctgcaaaag 6000 atggtcatgg gcaacacgaa gcctgttgag ctcatcctcg acgggaagac agtagccatc 6060 tgctgtgcta ctggagtgtt cggcactgcc tacctcgtgc ctcgtcatct tttcgctgag 6120 aagtacgaca agatcatgtt ggacggcagg gctttgacag acagtgacta cagagtgttt 6180 gagtttgaga ttaaagtaaa aggacaggac atgctctcag acgccgcgct catggtgctc 6240 caccgcggga accgcgtgag agacatcacg aaacactttc gtgatgtagc aagactgaag 6300 aaaggtaccc ccgtcgttgg cgtgattaac aacgctgatg ttgggagact gattttctct 6360 ggtgaggccc ttacctacaa agacattgta gtgtgcatgg acggagacac catgcccggc 6420 ctctttgcct acaaagccgc taccaaggct ggctactgtg gaggagccgt tcttgctaag 6480 gacggagctg acaccttcat cgttggcact cactctgctg gaggcaatgg agttgggtac 6540 tgctcatgcg tgtccaggtc catgcttctc aaaatgaagg cacacatcga ccctgaaccg 6600 caccacgagg ggttgatcgt tgataccaga gatgtggaag agcgcgtcca tgtaatgcgc 6660 aaaaccaagc ttgcacccac cgtcgcgcac ggtgtgttca atcctgagtt cgggcctgcc 6720 gccttgtcta acaaggaccc acgcctgaac gaaggtgttg tcctcgatga agtcattttc 6780 tccaagcata aaggagacac aaagatgtct gcggaggaca aagcgctgtt ccgccgctgc 6840 gctgctgact acgcgtcacg cctgcacagt gtgctgggta cggcaaatgc cccactgagc 6900 atttacgagg caatcaaggg cgttgacgga ctcgacgcca tggagccaga caccgcacct 6960 ggccttccct gggccctcca ggggaaacgc cgcggtgcac ttatcgattt cgagaacggc 7020 acggtcggac ccgaggttga ggctgccttg aagctcatgg agaaaagaga atacaagttt 7080 gcttgccaga ccttcctgaa ggacgaaatt cgcccgatgg agaaagtacg tgccggcaag 7140 actcgcattg tcgacgtttt gcctgttgaa cacattcttt acaccaggat gatgattggc 7200 agattttgtg cacaaatgca ctcaaacaac gggccgcaga ttggctcagc ggtcggttgc 7260 aaccctgatg ttgattggca gagattcggc acacacttcg cccactacag aaacgtgtgg 7320 gacgtggact attcggcctt tgatgcaaac cactgcagcg atgccatgaa catcatgttt 7380 gaagaggtgt tccgcacgga gttcggcttc cacccgaatg ctgagtggat cctgaagact 7440 ctcgtgaaca cggaacacgc ctatgagaac aagcgcatca ctgttgaagg cgggatgcca 7500 tctggctgtt ccgcaacaag catcatcaac acaattttga ataacatcta cgttctctac 7560 gccctgcgta gacactatga gggggttgag ctggacacct acaccatgat ctcctatgga 7620 gacgacatcg tggtggcaag cgattatgat ctggactttg aggccctcaa gcctcacttc 7680 aaatctcttg gccaaaccat tactccagct gacaaaagcg acaaaggttt tgttcttggt 7740 cactccatta ctgacgtcac tttcctcaaa agacacttcc acatggatta tggcactggg 7800 ttttacaaac ctgtgatggc ctcgaagacc ctcgaggcta tcctctcctt tgcacgccgt 7860 gggaccatcc aggagaagtt gatttccgtg gcaggactcg ccgtccactc cggaccagac 7920 gagtaccggc gcctctttga gcccttccag ggcctctttg agattccaag ctacagatca 7980 ctttacctgc gttgggtgaa cgccgtgtgc ggcgacgcat aatcccccaa acatcacaat 8040 tggcacaatg attttggggc gcgcgacgcc gtgggagtga aaagcccgaa agggcttttc 8100 ccgcttcctt aatcc 8115 //