ID AF273221; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC AF273221; XX DT 06-JUL-2000 (Rel. 64, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 2) XX DE Tobacco mosaic virus 183 kDa protein, 126 kDa protein, 54 kDa protein, DE movement protein, and coat protein genes, complete cds. XX KW . XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RX PUBMED; 2131099. RA Holt C.A., Hodgson R.A., Coker F.A., Beachy R.N., Nelson R.S.; RT "Characterization of the masked strain of tobacco mosaic virus: RT identification of the region responsible for symptom attenuation by RT analysis of an infectious cDNA clone"; RL Mol. Plant Microbe Interact. 3(6):417-423(1990). XX RN [2] RP 1-6395 RX DOI; 10.1016/0042-6822(91)90475-Q. RX PUBMED; 1994570. RA Holt C.A., Beachy R.N.; RT "In vivo complementation of infectious transcripts from mutant tobacco RT mosaic virus cDNAs in transgenic plants"; RL Virology 181(1):109-117(1991). XX RN [3] RP 1-6395 RA Holt C.A., Hodgson R.A., Coker F.A., Beachy R.N., Nelson R.S.; RT ; RL Submitted (30-MAY-2000) to the INSDC. RL Plant Biology Division, The Samuel Roberts Noble Foundation, 2510 Sam Noble RL Parkway, Ardmore, OK 73401, USA XX DR MD5; b45a5e509307169a47df6aad3c1d5a13. DR RFAM; RF01072; TMV_UPD-PK3. DR RFAM; RF01077; TLS-PK2. DR RFAM; RF01114; TMV_UPD-PK1. DR RFAM; RF01115; TMV_UPD-PK2. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Tobacco mosaic virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:12242" FT CDS 69..4919 FT /codon_start=1 FT /transl_except=(pos:3417..3419,aa:OTHER) FT /product="183 kDa protein" FT /note="read-through product" FT /db_xref="GOA:Q9IBK5" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9IBK5" FT /protein_id="AAF80604.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSTVNYWFPEMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYVNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCQSLEVDAMTAAKVIVAVMSNKSGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVTSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQXQLQIDSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNFDAVTM FT RLTDISLNVKDCILDMSKSVAAPKDQIKPLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIIDIENTASLVVDKFFDSYLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQHSANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV FT WEVHKTAPPGSFVYKSLVKYLSDKVLFRSLFIDGSSC" FT CDS 69..3419 FT /codon_start=1 FT /product="126 kDa protein" FT /db_xref="GOA:Q9IBK4" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9IBK4" FT /protein_id="AAF80603.1" FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVDSEQFYTAMEDAW FT HYKKTLAMCNSERILLEDSSTVNYWFPEMRDMVIVPLFDISLETSKRTRKEVLVSKDFV FT FTVLNHIRTYQAKALTYVNVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLIRVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV FT FSQMCQSLEVDAMTAAKVIVAVMSNKSGLTLTFERPTEANVALALQDQEKASEGALVVT FT SREVEEPSMKGSMARGELQLAGLAGDHPESSYSRNEEIESLEQFHMATADSLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVTSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS FT SGIIVATKDNVKTVDSFMMNFGKSTRCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD FT MYKVDAGTQ" FT CDS 3495..4919 FT /codon_start=1 FT /product="54 kDa protein" FT /db_xref="GOA:Q88598" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q88598" FT /protein_id="AAF80605.1" FT /translation="MQFYYDKCLPGNSTMMNNFDAVTMRLTDISLNVKDCILDMSKSVA FT APKDQIKPLIPMVRTAAEMPRQTGLLENLVAMIKRNFNAPELSGIIDIENTASLVVDKF FT FDSYLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKA FT QPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSELTRQLLDSVDSSRFLFFTRKTP FT AQIEDFFGDLDSHVPMDVLELDISKYDKSQNEFHCAVEYEIWRRLGFEDFLGEVWKQGH FT RKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIKGAFCGDDSL FT LYFPKGCEFPDVQHSANLMWNFEAKLFKKQYGYFCGRYVIHHDRGCIVYYDPLKLISKL FT GAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAVWEVHKTAPPGSFVYKSLVKYL FT SDKVLFRSLFIDGSSC" FT CDS 4903..5709 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q9IBK3" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9IBK3" FT /protein_id="AAF80606.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITSQDAMKNVWQVLVNVRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKNSSSDRSVPNKNYRNVKDFGGMSFKKNNLIDDDSEATVAESDSF" FT CDS 5712..6191 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q77LT8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="PDB:2OM3" FT /db_xref="PDB:2XEA" FT /db_xref="UniProtKB/TrEMBL:Q77LT8" FT /protein_id="AAF80607.1" FT /translation="MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT" XX SQ Sequence 6395 BP; 1863 A; 1227 C; 1545 G; 1760 T; 0 other; gtatttttac aacaattacc aacaacaaca aacaacaaac aacattacaa ttactattta 60 caattacaat ggcatacaca cagacagcta ccacatcagc tttgctggac actgtccgag 120 gaaacaactc cttggtcaat gatctagcaa agcgtcgtct ttacgacaca gcggttgaag 180 agtttaacgc tcgtgaccgc aggcccaaag tgaacttttc aaaagtaata agcgaggagc 240 agacgcttat tgctacccgg gcgtatccag aattccaaat tacattttat aacacgcaaa 300 atgccgtgca ttcgcttgca ggtggattgc gatctttaga actggaatat ctgatgatgc 360 aaattcccta cggatcattg acttatgaca taggcgggaa ttttgcatcg catctgttca 420 agggacgagc atatgtacac tgctgcatgc ccaacctgga cgttcgagac atcatgcggc 480 atgaaggcca gaaagacagt attgaactat acctttctag gctagagaga gggggaaaaa 540 cagtccccaa cttccaaaag gaagcatttg acagatacgc agaaattcct gaagacgctg 600 tctgtcacaa tactttccag acatgcgaac atcagccgat gcaacaatca ggcagagtgt 660 atgccattgc gctacacagc atatatgaca tacccgctga tgagttcggg gcagcactct 720 tgaggaaaaa tgtccatacg tgctatgccg ctttccactt ctctgagaac ctgcttcttg 780 aagattcata cgtcaatctg gacgaaatca acgcgtgttt ttcgcgcgat ggagacaagt 840 tgaccttttc ttttgcatca gagagtactc ttaattactg tcatagttat tctaatattc 900 ttaagtatgt gtgcaaaact tacttcccgg cctctaatag agaggtttac atgaaggagt 960 ttttagtcac cagggttaat acctggtttt gtaagttttc tagaatagat acttttcttt 1020 tgtacaaagg tgtggcccat aaaggtgtag atagtgagca gttttatact gcaatggaag 1080 acgcatggca ttacaaaaag actcttgcaa tgtgcaacag cgagagaatc ctccttgagg 1140 attcatcaac agtcaattac tggtttcccg aaatgaggga tatggtcatc gtaccattat 1200 tcgacatttc tttggagact agtaagagga cgcgcaagga agtcttagtg tccaaggatt 1260 tcgtgtttac agtgcttaac cacattcgaa cataccaggc aaaagctctt acatacgtaa 1320 atgttttgtc cttcgtcgaa tcgattcgat cgagggtaat cattaacggt gtgacagcga 1380 ggtccgaatg ggatgtggac aaatctttgt tacaatcctt gtccatgacg ttttacctgc 1440 atactaagct tgccgttcta aaggatgact tactgattag caagtttagt ctcggttcga 1500 aaacggtgtg ccagcatgtg tgggatgaga tttcactggc gtttgggaac gcatttccct 1560 ccgtgaaaga gaggctcttg aacaggaaac ttatcagagt ggcaggcgac gcactagaga 1620 tcagggtgcc tgatctatat gtgaccttcc acgaccgatt agtgactgag tacaaggcct 1680 ctgtggacat gcctgcgctt gacattagga agaagatgga agaaacggaa gtgatgtaca 1740 atgcactttc agagttatcg gtgttaaggg agtctgacaa attcgatgtt gatgtttttt 1800 cccagatgtg ccaatctttg gaagttgacg caatgacggc agcgaaggtt atagtcgcgg 1860 tcatgagcaa taagagcggt ctgactctca catttgaacg acctactgag gcgaatgttg 1920 cgctagcttt acaggatcaa gaaaaggctt cagaaggtgc tttggtagtt acctcaagag 1980 aagttgaaga accgtccatg aagggttcga tggccagagg agagttacaa ttagctggtc 2040 ttgctggaga tcatccggag tcgtcctatt ctaggaacga ggagatagag tctttagagc 2100 agtttcatat ggcaacggca gattcgttaa ttcgtaagca gatgagctcg attgtgtaca 2160 cgggtccgat taaagttcag caaatgaaaa actttatcga tagcctggta gcatcactat 2220 ctgctgcggt gtcgaatctc gtcaagatcc tcaaagatac agctgctatt gaccttgaaa 2280 cccgtcaaaa gtttggagtc ttggatgtta catctaggaa gtggttaatt aaaccaacgg 2340 ccaagagtca tgcatggggt gttgttgaaa cccacgcgag gaagtatcat gtggcgcttc 2400 tggaatatga tgagcagggt gtggtgacat gcgatgattg gagaagagta gctgtcagct 2460 ctgagtctgt tgtttattcc gacatggcga aactcagaac tctgcgcaga ctgcttcgaa 2520 acggagaacc gcatgtcagt agcgcaaagg ttgttcttgt ggacggagtt ccgggctgtg 2580 gaaaaaccaa agaaattctt tccagggtta attttgatga agatctaatt ttagtacctg 2640 ggaagcaagc tgctgaaatg atcagaagac gtgcgaattc ctcagggatt attgtggcca 2700 cgaaggacaa cgttaaaacc gttgattctt tcatgatgaa ttttgggaaa agcacacgct 2760 gtcagttcaa gaggttattc attgatgaag ggttgatgtt gcatactggt tgtgttaatt 2820 ttcttgtggc gatgtcattg tgcgaaattg catatgttta cggagacaca cagcagattc 2880 catacatcaa tagagtttca ggattcccgt accccgccca ttttgccaaa ttggaagttg 2940 acgaggtgga gacacgcaga actactctcc gttgtccagc cgatgtcaca cattatctga 3000 acaggagata tgagggcttt gtcatgagca cttcttcggt taaaaagtct gtttcgcagg 3060 agatggtcgg cggagccgcc gtgatcaatc cgatctcaaa acccttgcat ggcaagatcc 3120 tgacttttac ccaatcggat aaagaagctc tgctttcaag agggtattca gatgttcaca 3180 ctgtgcatga agtgcaaggc gagacatact ctgatgtttc actagttagg ctaaccccta 3240 caccagtctc catcattgca ggagacagcc cgcatgtttt ggtcgcattg tcaaggcaca 3300 cctgttcgct caagtactac actgttgtta tggatccttt agttagtatc attagagatc 3360 tagagaaact tagctcgtac ttgttagata tgtataaggt cgatgcagga acacaatagc 3420 aattacagat tgactcggtg ttcaaaggtt ccaatctttt tgtggcagcg ccaaagactg 3480 gtgatatttc tgatatgcag ttttactatg ataagtgtct cccaggcaac agcaccatga 3540 tgaataattt tgatgctgtt accatgaggt tgactgacat ttcattgaat gtcaaagatt 3600 gcatattgga tatgtctaag tctgttgctg cgcctaagga tcaaatcaaa ccactaatac 3660 ctatggtacg aacggcggca gaaatgccac gccagactgg actattggaa aatttagtgg 3720 cgatgattaa aaggaacttt aacgcacccg agttgtctgg catcattgat attgaaaata 3780 ctgcatcttt agttgtagat aagtttttcg atagttattt gcttaaagaa aaaagaaaac 3840 caaataaaaa tgtttctttg ttcagtagag agtctctcaa tagatggtta gaaaagcagg 3900 aacaggtaac aataggccag ctcgcagatt ttgattttgt agatttgcca gcagttgatc 3960 agtacagaca catgatcaaa gcacaaccca agcaaaaatt ggacacttca atccaaacgg 4020 agtacccggc tttgcagacg attgtgtacc attcgaaaaa gatcaatgca atatttggcc 4080 cgttgtttag tgagcttact aggcaattac tggacagtgt tgattcgagc agatttttgt 4140 ttttcacaag aaagacacca gcgcagattg aggatttctt cggagatctc gacagtcatg 4200 tgccgatgga tgtcttggag ctggatatat caaaatacga caaatctcag aatgaattcc 4260 actgtgcagt agaatacgag atttggcgaa gattgggttt tgaagacttc ttgggagaag 4320 tttggaaaca agggcataga aagaccaccc tcaaggatta taccgcaggt atcaaaactt 4380 gcatctggta tcaaagaaag agtggggacg tcacgacatt cattggaaac actgtgatca 4440 ttgctgcatg tttggcctcg atgcttccga tggagaaaat aatcaaagga gccttttgtg 4500 gtgacgatag tctgctgtac ttcccaaagg gttgtgagtt tccggatgtg caacactccg 4560 cgaatcttat gtggaatttt gaagcaaaac tgtttaaaaa acagtatgga tacttttgcg 4620 gaagatatgt aatacatcac gacagaggat gcattgtgta ttacgatccc ctaaagttga 4680 tctcgaaact tggcgctaaa cacatcaagg attgggaaca cttggaggag ttcagaaggt 4740 ctctttgtga tgttgctgtt tcgttgaaca attgtgcgta ttatacacag ttggacgacg 4800 ctgtatggga ggttcataag accgcccctc caggttcgtt tgtttataaa agtctggtga 4860 agtatttgtc tgataaagtt ctttttagaa gtttgtttat agatggctct agttgttaaa 4920 ggaaaagtga atatcaatga gtttatcgac ctgacaaaaa tggagaagat cttaccgtcg 4980 atgtttaccc ctgtaaagag tgtcatgtgt tccaaagttg ataaaataat ggttcatgag 5040 aatgagtcat tgtcagaggt gaaccttctt aaaggagtta agcttattga tagtggatac 5100 gtctgtttag ccggtttggt cgtcacgggc gagtggaact tgcctgacaa ttgcagagga 5160 ggtgtgagcg tgtgtctggt ggacaaaagg atggaaagag ccgacgaggc cactctcgga 5220 tcttactaca cagcagctgc aaagaaaaga tttcagttca aggtcgttcc caattatgct 5280 ataaccagcc aggacgcgat gaaaaacgtc tggcaagttt tagttaatgt tagaaatgtg 5340 aagatgtcag cgggtttctg tccgctttct ctggagtttg tgtcggtgtg tattgtttat 5400 agaaataata taaaactagg tttgagagag aagattacaa acgtgagaga cggagggccc 5460 atggaactta cagaagaagt cgttgatgag ttcatggaag atgtccctat gtcaatcagg 5520 cttgcaaagt ttcgatctcg aaccggaaaa aagagtgatg tccgtaaagg gaaaaatagt 5580 agtagtgatc ggtcagtgcc gaacaagaac tatagaaatg ttaaggattt tggaggaatg 5640 agttttaaaa agaataattt aatcgatgat gattcggagg ctactgtcgc cgaatcggat 5700 tcgttttaaa tatgtcttac agtatcacta ctccatccca gttcgtgttc ttgtcatcag 5760 cgtgggccga cccaatagag ttaattaatt tatgtactaa tgccttagga aatcagtttc 5820 aaacacaaca agctcgaact gtcgttcaaa gacaattcag tgaggtgtgg aaaccttcac 5880 cacaagtaac tgttaggttc cctgacagtg actttaaggt gtacaggtac aatgcggtat 5940 tagacccgct agtcacagca ctgttaggtg cattcgacac tagaaataga ataatagaag 6000 ttgaaaatca ggcgaacccc acgactgccg aaacgttaga tgctactcgt agagtagacg 6060 acgcaacggt ggccataagg agcgcgataa ataatttaat agtagaattg atcagaggaa 6120 ccggatctta taatcggagc tctttcgaga gctcttctgg tttggtttgg acctctggtc 6180 ctgcaacttg aggtagtcaa gatgcatgat aaataacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 atcgcgcggg tcaaatgtat atggtgcata tacatccgca ggcacgtaat aaagcgaggg 6360 gttcgaatcc ccccgttacc cccggtaggg gccca 6395 //