ID AF271218; SV 2; linear; genomic RNA; STD; VRL; 2510 BP. XX AC AF271218; XX DT 08-AUG-2000 (Rel. 64, Created) DT 01-MAY-2003 (Rel. 75, Last updated, Version 3) XX DE Unidentified Verbena-infecting Carlavirus RNA dependent RNA polymerase DE gene, partial cds; and 25.8 kDa protein and 12 kDa protein genes, complete DE cds. XX KW . XX OS Verbena latent virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-2510 RX DOI; 10.1007/s00705-002-0973-5. RX PUBMED; 12721806. RA Cohen J., Zeidan M., Feigelson L., Maslenin L., Rosner A., Gera A.; RT "Characterization of a distinct carlavirus isolated from Verbena"; RL Arch. Virol. 148(5):1007-1015(2003). XX RN [2] RP 1-2510 RA Cohen J., Rosner A., Kagan S., Lampel M., Beckelman H., Maselnin L., RA Zeidan M., Gera A.; RT ; RL Submitted (24-MAY-2000) to the INSDC. RL Virology, ARO, Bet-Dagan 50250, Israel XX RN [3] RC Sequence update by submitter RP 1-2510 RA Cohen J., Rosner A., Kagan S., Lampel M., Beckelman H., Maselnin L., RA Zeidan M., Gera A.; RT ; RL Submitted (21-AUG-2002) to the INSDC. RL Virology, ARO, Bet-Dagan 50250, Israel XX DR MD5; 8b307b456c247d146476d45200d20ce0. XX CC On Feb 3, 2003 this sequence version replaced gi:9739153. XX FH Key Location/Qualifiers FH FT source 1..2510 FT /organism="Verbena latent virus" FT /mol_type="genomic RNA" FT /db_xref="taxon:134374" FT CDS <1..1471 FT /codon_start=2 FT /product="RNA dependent RNA polymerase" FT /note="ORF1" FT /db_xref="GOA:Q9IFE7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9IFE7" FT /protein_id="AAF97924.2" FT /translation="EKLQGDPWLKCMMDLLQMPDQEECEILQEEMQEEWFKTHLPRCEL FT ESIRARWVHKILAKEFREKRMGSMVSEQFTDEHSKSPGIKHLTNAAERFETIYPRHRAN FT EFDMFIMAVKKRLRFSNPAKEQAKLFGAKPYGRFLLDEFLKRVPLKRSHNEEFMSRAKA FT DFESKKVSKSAATIENHSGRSCSDWLFDICQVFSKSQICTKFDNRFKVAKAAQSNVCFQ FT HSVLCRFAPYMRYIEMKLQEVLPKNFYVHSGKGLDELNQWVKENKFDGVCTESDYEAFD FT ASQDQFIVAFELALMEYLGLPRSLIADYVYIKTHLGSKLGSFAIMRFSGEASTFLFNTM FT ANMLFTFLRYNLKGHEAICFAGDDMCANSHLRLKRDHEDFLGKLKLKAKVQFTQFVAIP FT TFCGWNLTPDGIFKKPQLVLERICIAKETGNLHNCIDNYAIEVAFAYKLGEKAVNRMNE FT EELEAFYNCVRIIVKKKHLVRCVCADVFRML" FT CDS 1510..2199 FT /codon_start=1 FT /product="25.8 kDa protein" FT /note="ORF2" FT /db_xref="GOA:Q80AZ6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q80AZ6" FT /protein_id="AAO33934.1" FT /translation="MDIVVNKAQSFGFQRLSSKLDLPIVLHSVPGAGKSSLIRELIKLD FT SRFEAYTFGEPDRPSVSGYWIRPHTELNQRDKFILIDEYTAGINLDFAYAVFGDPLQSN FT NRQVKRAHFVCKESRRFGKATAQLLQQFGFDVHSSGDDVVNITDALTVDPKGVIVYYED FT EVKCLLDYNRVEAKHVREIRGKTFEEVTFITASNDLGSDPVAAFQCLTRHKVALNIFCP FT DATYRPA" FT CDS 2177..2506 FT /codon_start=1 FT /product="12 kDa protein" FT /note="ORF3" FT /db_xref="GOA:Q80AZ5" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q80AZ5" FT /protein_id="AAO33935.1" FT /translation="MPLIAPPDNTRAFLCLAIGISLSLFIGLYTRNTLPHVGDLHHSLP FT HGGFYRDGTKTISYLKPNKLNSVEGHRKHFATQPWALVILVGLIIAVTHKWQSPRCSRC FT VICHT" XX SQ Sequence 2510 BP; 725 A; 487 C; 618 G; 680 T; 0 other; ggagaagttg cagggggatc cgtggcttaa atgcatgatg gatttgctgc aaatgccaga 60 tcaggaagag tgtgagatat tgcaagaaga aatgcaagaa gagtggttca aaacgcattt 120 gccaaggtgc gagcttgaga gtattagagc gcgatgggtg cacaagattt tggcgaagga 180 attcagggag aaaagaatgg gcagcatggt gtccgagcaa ttcacagatg agcattctaa 240 gagccctggc atcaagcatt tgacgaatgc agcagagcgt tttgaaacca tttatcctag 300 gcatagagct aatgaattcg atatgtttat catggccgtt aaaaaaagac tgcgtttctc 360 caacccggca aaagaacaag caaagttgtt tggtgctaaa ccttatggca ggttcctact 420 tgatgaattc ctcaaaagag tgccactcaa gcgatcgcat aacgaggaat tcatgagcag 480 ggctaaagct gattttgaga gcaaaaaagt tagtaagagt gcggcaacga tcgaaaatca 540 cagtggtaga tcatgtagcg attggctctt tgacatttgt caagtcttta gtaagtcgca 600 aatttgcact aaatttgaca acaggttcaa agtggctaag gctgcccaat ctaatgtgtg 660 tttccaacac agtgttctct gcagatttgc gccttacatg agatacattg aaatgaaatt 720 gcaagaggtg ctgccgaaaa atttctatgt acactcaggc aaaggccttg atgaattaaa 780 tcagtgggta aaggagaata agttcgatgg agtctgcaca gaatcagatt acgaagcttt 840 cgatgcttct caggatcagt tcatcgtcgc ttttgagcta gccttgatgg agtacttggg 900 cctgccgaga agcctcatag ctgattatgt ttatatcaaa acgcatctgg gttcgaagct 960 tgggagcttc gcaattatga gattctctgg tgaggccagc acattcttgt tcaacacaat 1020 ggcgaatatg ttgttcacct tcttgagata caatcttaag ggacatgaag ccatttgctt 1080 cgctggggac gatatgtgtg ctaacagtca tttgaggctt aaacgtgatc atgaggattt 1140 cctcgggaag ctaaagctaa aagccaaagt tcaattcaca caattcgtgg ccattccaac 1200 tttctgcggg tggaatctga cgcctgatgg gatatttaaa aaaccgcaac tggttcttga 1260 acgaatttgc atagccaaag aaacgggcaa tctacataat tgcattgata attatgccat 1320 tgaagtggct tttgcataca agttgggtga gaaggcagtg aacagaatga atgaagaaga 1380 acttgaagcc ttttacaact gtgttcgaat cattgtcaaa aagaaacatc tcgtacgctg 1440 cgtctgtgca gatgtgttca gaatgctcta atctaagtgc tttaggtatt gcaattgtct 1500 tgaatatata tggatatagt cgttaataaa gctcagtctt ttggctttca acgtttgagt 1560 agtaaattag atttacccat tgtgttacat tctgtgcccg gtgctggcaa aagtagttta 1620 attagagagt taatcaagtt agattccaga tttgaagcct acacctttgg tgagccagac 1680 agaccatctg tatcaggcta ctggataagg cctcacactg aattgaacca gagagacaag 1740 ttcatcctta tcgacgagta tacagcggga ataaaccttg attttgccta cgccgtgttt 1800 ggggatcctt tgcagagcaa taatagacaa gtcaaacgcg cccatttcgt ctgtaaagag 1860 agccgtaggt ttggcaaagc tactgcgcaa ctgttgcagc agtttggttt cgacgtgcat 1920 tcttctggtg acgacgtggt gaatattaca gacgcactga ccgtagatcc gaaaggtgtt 1980 atagtgtatt acgaggacga agtgaagtgc ttgctggatt acaatcgagt agaagcgaaa 2040 cacgtgcgtg agattcgagg taaaaccttt gaggaggtga ccttcatcac tgcttcaaac 2100 gatttgggat ccgacccggt agcagctttc cagtgtctca cgaggcacaa ggttgcattg 2160 aacatattct gtcccgatgc cacttatcgc cccgcctgat aacacacgag cctttctgtg 2220 tttagccatt ggtataagct tatcgttgtt catcgggttg tacacgagga atactttgcc 2280 acacgttggg gacttgcatc attcattgcc acacgggggt ttctacagag acggcacaaa 2340 gacaattagt tacctcaagc caaacaagtt gaactccgtg gaggggcatc gaaagcactt 2400 cgctactcaa ccctgggcgt tggttatact agttgggctg atcattgctg taactcacaa 2460 atggcaaagt ccgaggtgta gcagatgtgt catctgtcac acttagatag 2510 //