ID AF266518; SV 2; linear; genomic RNA; STD; VRL; 4094 BP. XX AC AF266518; XX DT 09-OCT-2000 (Rel. 65, Created) DT 03-AUG-2016 (Rel. 129, Last updated, Version 6) XX DE Maize necrotic streak virus isolate Arizona, complete genome. XX KW . XX OS Maize necrotic streak virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Zeavirus. XX RN [1] RP 29-3832 RX DOI; 10.1094/PDIS.2000.84.10.1133. RX AGRICOLA; IND22077120. RA Louie R., Redinbaugh M.G., Gordon D.T., Abt J.J., Anderson R.J.; RT "Maize necrotic streak virus, a new maize virus with similarity to species RT of the family Tombusviridae"; RL Plant Dis. 84(10):1133-1139(2000). XX RN [2] RP 1-4094 RX DOI; 10.1016/j.virol.2006.02.004. RX PUBMED; 16545417. RA Scheets K., Redinbaugh M.G.; RT "Infectious cDNA transcripts of Maize necrotic streak virus: infectivity RT and translational characteristics"; RL Virology 350(1):171-183(2006). XX RN [3] RP 29-3832 RA Louie R., Redinbaugh M.G., Gordon D.T., Abt J.J., Anderson R.J.; RT ; RL Submitted (10-MAY-2000) to the INSDC. RL Department of Plant Pathology, USDA, ARS and The Ohio State RL University/OARDC, 1680 Madison Ave., Wooster, OH 44691, USA XX RN [4] RC Sequence update by submitter RP 1-4094 RA Scheets K.M., Redinbaugh M.G.; RT ; RL Submitted (20-JAN-2006) to the INSDC. RL Department of Plant Pathology, USDA, ARS and The Ohio State RL University/OARDC, 1680 Madison Ave., Wooster, OH 44691, USA XX RN [5] RC Amino acid sequence updated by submitter RP 1-4094 RA Scheets K.M., Redinbaugh M.G.; RT ; RL Submitted (01-AUG-2016) to the INSDC. RL Plant Biology, Ecology, & Evolution, Oklahoma State University, 301 PS, RL Stillwater, OK 74078, USA XX DR MD5; f66dcd70a886faaf2f3e7c7efe506311. DR RFAM; RF00171; Tombus_5. DR RFAM; RF00176; Tombus_3_IV. DR RFAM; RF00510; Tombus_IRE. XX CC On Jan 20, 2006 this sequence version replaced gi:10644290. XX FH Key Location/Qualifiers FH FT source 1..4094 FT /organism="Maize necrotic streak virus" FT /host="Zea mays" FT /isolate="Arizona" FT /mol_type="genomic RNA" FT /country="USA" FT /note="MNeSV" FT /db_xref="taxon:137556" FT 5'UTR 1..122 FT CDS 123..2489 FT /codon_start=1 FT /transl_except=(pos:924..926,aa:OTHER) FT /product="p89 protein" FT /note="RNA-dependent RNA polymerase; replicase; FT read-through protein; similar to Tombusvirus p92 protein" FT /db_xref="GOA:Q9E352" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q9E352" FT /protein_id="AAG21222.2" FT /translation="MELLNKLFGTERPIYVGDFAIGVNKPRNIDMFDLVCRLALKYIRT FT GRVERDVGTLTEFLVVIAKNDCAAKWDWLMRRGKGRDYIKPAIVAGIGILLPLLFAKRW FT YTRMATAVVTLPLTAVATYATLPRESLSAFKMRKEAMADMGDESDATECLEVWKAKSIK FT GPDGEEVVTGSRITRVVAKVKPRRNRYAAKIAQVARSKVGYLSNTPENRLIYQRVLIEI FT MDKDCVRYCDRDALLPVAIGLCFVYQEGVREASQLWGSTESLGLKXGGLVRLPGTVTRI FT NNDIPSGVLQSQEVFQVRIGPPVSKERSIYMVSGCPSQARFLVHNHCLANLKRGLVERV FT FCVEKNGKLVRTPQPAKGAFASLSPFRKAVVEEVGTAHRLGYDGFLSYYSGAKLRTYSN FT AVESLHIQSVNERDSHLTTFVKAEKISTSKGDPAPRVIQPRSPRYNVELGRYLRHLESK FT LMKAVDTVYGETTCIKGYTADEVGMIFKNKWDRFHKPVAIGLDASRFDQHCSVEALQFE FT HGFYKALYPNNKLLDKLLSWQLVNKGKGYVPDGGISYVKEGCRMSGDINTSLGNYLLMC FT SMVYGFMRFVGINEYSLANCGDDCVLIVESRNLDQVQSKLPEYFFRLGFTMKVEKPVYY FT LEEIEFCQAHPVQFQGGWKMVRNVRTAMSKDVHCVNNIRDIPTRKAWSNAQHVGGMALS FT SGIPVVETFYSRFRTYDVVKHQRIDTVTNQHKWRGAGGAYVVTPESRASFWQAFRLTGD FT EQQALEDRLMRWEMDLCGIEGTDSCEPSVLDFAAA" FT CDS 123..926 FT /codon_start=1 FT /product="p30 protein" FT /note="replicase-associated protein; similar to Tombusvirus FT p33 protein" FT /db_xref="GOA:Q9E351" FT /db_xref="InterPro:IPR013707" FT /db_xref="UniProtKB/TrEMBL:Q9E351" FT /protein_id="AAG21221.1" FT /translation="MELLNKLFGTERPIYVGDFAIGVNKPRNIDMFDLVCRLALKYIRT FT GRVERDVGTLTEFLVVIAKNDCAAKWDWLMRRGKGRDYIKPAIVAGIGILLPLLFAKRW FT YTRMATAVVTLPLTAVATYATLPRESLSAFKMRKEAMADMGDESDATECLEVWKAKSIK FT GPDGEEVVTGSRITRVVAKVKPRRNRYAAKIAQVARSKVGYLSNTPENRLIYQRVLIEI FT MDKDCVRYCDRDALLPVAIGLCFVYQEGVREASQLWGSTESLGLK" FT misc_RNA 2488..4094 FT /note="subgenomic RNA1" FT CDS 2520..3293 FT /codon_start=1 FT /product="capsid protein" FT /note="CP" FT /db_xref="GOA:Q9E350" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9E350" FT /protein_id="AAG21218.1" FT /translation="MTKAKGNDRISRLEVLVERMTAIAPGKTKRKNRKAKPARSSVVTA FT PVVGSAIIRSRVPKVLNSREGVVVSNTERFSILTTAVGVATFSRIDITPSNVLWLNGVA FT INYSKYRWISVQMYYIPIVPTTQTGLMAMGFVYDVNDSMTGTTVGMVQQMYGAVSGPIW FT AGYEGGSGLNTPGTKVPTGALCITLDTGRLDKSYYKYATVAQIGAMSGPEAAMYVPASV FT VWATDSAAVAQGGAGQIMAKYTVELLEPIPATLND" FT misc_RNA 3314..4094 FT /note="subgenomic RNA2" FT CDS 3329..3898 FT /codon_start=1 FT /product="p21 protein" FT /note="putative cell-to-cell movement protein; similar to FT Tombusvirus p22 protein" FT /db_xref="GOA:Q9E349" FT /db_xref="InterPro:IPR005332" FT /db_xref="UniProtKB/TrEMBL:Q9E349" FT /protein_id="AAG21220.2" FT /translation="MDAEYEQVSRPWNELYKEATLGNKLVVNVGSEDAEIPLLPSNYLT FT KARLAMSGGYITMRMIRIRIVPLVSRNSGVSGRLFLRDITDTTGKKLHSTELLDLGKEI FT RLSLRHLDFSVSTRSAVPIVFGFEELVSPYLEGRELFSVSFRWQIGLSAQSYSLPQVPW FT KVLYQEDALRRKLPKKANKTNSPPNV" FT CDS 3361..3873 FT /codon_start=1 FT /product="p19 protein" FT /note="suppressor of RNA silencing; similar to Tombusvirus FT p19 protein" FT /db_xref="GOA:Q9E348" FT /db_xref="InterPro:IPR004905" FT /db_xref="InterPro:IPR036131" FT /db_xref="UniProtKB/TrEMBL:Q9E348" FT /protein_id="AAG21219.2" FT /translation="MERAIQGSDAWQQTGGQRRVGGCGDSFAPFQLPDESPTSDEWRLH FT HDAYDPDTDCPLGFKEFWSVGKAISKRYHRYDWKEASLDRALGSWQGDKVITEASRFLG FT VDQVSCTYSIRVRGVSITLSGGSRALLRLVSMADRIKRSELQFATSAVESVVSRGCPEE FT ETPKESE" FT 3'UTR 3874..4094 XX SQ Sequence 4094 BP; 1034 A; 926 C; 1170 G; 964 T; 0 other; agatatcgac ctgcctgacc aggctgagat tgcgctagcc ggcgtagttg gtatctctcg 60 cgcaagcggg tttgaaggtg cggcctatct taggggggta aattgtaact tcgcacaaag 120 gcatggagct cctcaacaag ctctttggca cggagaggcc tatatatgtg ggtgattttg 180 caataggggt caacaaaccg agaaacatcg atatgtttga cctcgtttgc agactggctc 240 tcaaatatat taggacggga cgtgtggagc gggacgtggg cacccttacg gaattcctgg 300 tggtcatcgc gaagaatgac tgtgctgcca agtgggactg gttgatgcgg cgtggcaaag 360 ggagggatta catcaaacct gccatagtgg caggcattgg tatcctgctc cctctgctat 420 tcgccaaacg ctggtacact aggatggcaa cagccgttgt gaccctccca ttaacagctg 480 tggctactta cgccacactg ccaagggaga gtctgtcagc gttcaagatg cgtaaggagg 540 ccatggcgga catgggggac gagagtgacg caaccgaatg cttagaggta tggaaggcaa 600 aatcaatcaa gggacctgat ggtgaggagg tggttacagg cagtcgcatt actagggtag 660 tagcgaaagt gaaacccaga cgcaaccgct atgccgccaa gatcgcccaa gtcgctagat 720 ctaaggtagg ttacctcagc aacacacccg agaacagact tatctatcag agggttctca 780 tagagataat ggacaaggac tgcgttaggt actgtgacag ggatgccctg ttacctgtag 840 ctatcgggct ttgtttcgta taccaggaag gtgtgaggga agcgtctcaa ctctggggct 900 ctacggagtc cctggggttg aaatagggag gcctagtgcg cctgcctggc actgtgacac 960 gcatcaacaa tgatatccca tccggtgtct tacagagtca ggaggtgttt caggtccgca 1020 taggacctcc cgtatccaag gagcgcagta tatacatggt ttcaggttgt ccatcacagg 1080 cgcgcttctt ggttcacaat cattgcctgg caaacctgaa aaggggtctt gtggagaggg 1140 ttttctgtgt cgagaaaaac gggaaactcg ttcgcactcc acaacctgct aaaggagcct 1200 ttgctagtct ttccccgttc aggaaagcgg tagtggaaga ggtcggaact gcccaccgcc 1260 ttggttatga cgggtttctg tcatactata gcggcgcgaa gttgcgtact tattcgaatg 1320 ccgtggagag tttgcatatc caatctgtaa acgagagaga tagtcatctg acaactttcg 1380 ttaaagcaga gaagatatcg actagcaaag gtgacccagc gcctagggtg atccagcctc 1440 gatcacctag gtacaatgtt gagttggggc gttatctgcg gcatttagag tccaagttga 1500 tgaaagccgt tgacactgta tatggtgaga ccacgtgcat taaaggatac acagccgatg 1560 aggttggcat gatcttcaag aacaagtggg acaggtttca caagcctgtt gccattggcc 1620 ttgacgcctc acggtttgat cagcactgct ctgtggaggc cctccagttt gaacatgggt 1680 tctacaaggc actttacccc aataataagc tcttggacaa attgttgtct tggcagttgg 1740 ttaataaagg aaaggggtat gtacctgatg gtggaatttc ctatgtaaaa gagggttgtc 1800 gcatgagtgg ggacatcaat acctctttag gtaattattt gctgatgtgt tctatggtgt 1860 atgggtttat gagattcgtg ggcatcaacg agtacagcct cgccaattgt ggtgatgact 1920 gtgtgctaat tgtcgaatct cgtaacttgg atcaggttca gtctaaactc ccggaatatt 1980 tttttaggct tggtttcacc atgaaggtgg agaagcctgt gtattatctc gaggagattg 2040 agttttgcca agcccaccca gtacagtttc aaggcggttg gaagatggtt cgtaatgtca 2100 gaacggccat gtctaaggat gtacactgtg tcaacaatat acgtgatata ccaacgcgta 2160 aggcctggag taatgcacag catgtgggag gcatggccct ctcatctggc ataccagtgg 2220 tagagacctt ctactcacgc ttcaggacct atgatgttgt aaaacaccag agaattgaca 2280 cagtcacaaa ccaacataag tggcgtggtg ccggtggggc ctatgtggtt acccccgaaa 2340 gccgcgcatc tttttggcag gcgttccgat taactggaga tgagcaacag gctctggagg 2400 accgtctaat gagatgggag atggacttat gtggaatcga gggcacagac tcgtgtgagc 2460 ctagtgtcct agatttcgcc gcagcatgac caacaactcg gcacacaaac gcacacaaca 2520 tgactaaggc taaaggaaat gacaggatca gcagattgga ggtgctcgtg gagaggatga 2580 ccgctatagc ccccggcaaa accaaacgga agaaccggaa ggccaaaccg gccagatcat 2640 ctgtcgtcac ggcaccagtt gttggcagcg ccatcattcg cagccgcgtg cccaaggtcc 2700 tgaacagtag ggaaggcgtc gtggtatcta acacggagag attctccatt cttacgacag 2760 ccgtcggcgt agcgaccttc tccaggatcg acattacacc ctcgaacgtg ctatggctga 2820 atggggtggc tattaattac tccaagtacc ggtggatatc tgtgcagatg tactacatac 2880 ctatcgttcc tacaacacag acaggtctca tggcgatggg gttcgtatat gatgtcaatg 2940 acagcatgac gggcaccacg gtggggatgg ttcaacagat gtatggagcg gtcagtggcc 3000 ctatttgggc tgggtatgag ggtggatcgg gcttgaacac accaggtact aaggttccta 3060 ctggtgcttt atgcatcacg ctggatactg ggaggcttga taagtcatac tacaagtacg 3120 ccactgtagc acaaataggg gccatgtcgg ggccagaggc ggcaatgtac gtgccggcaa 3180 gcgtggtttg ggcaactgac tcagctgctg tcgcacaggg cggcgctggg cagattatgg 3240 ccaaatacac cgtcgaactg cttgaaccta taccagctac acttaacgac tagtgtgcgc 3300 ataggggcct cttgaacaag accagttcat ggatgcagaa tacgagcaag tcagtaggcc 3360 atggaacgag ctatacaagg aagcgacgct tggcaacaaa ctggtggtca acgtcgggtc 3420 ggaggatgcg gagattcctt tgctcccttc caactacctg acgaaagccc gactagcgat 3480 gagtggcggt tacatcacga tgcgtatgat ccggatacgg attgtcccct tggtttcaag 3540 gaattctgga gtgtcgggaa ggctatttct aagagatatc acagatacga ctggaaagaa 3600 gcttcactcg acagagctct tggatcttgg caaggagata aggttatcac tgaggcatct 3660 cgatttctcg gtgtcgacca ggtcagctgt acctatagta ttcgggttcg aggagttagt 3720 atcaccctat ctggagggtc gagagctctt ctccgtctcg tttcgatggc agatcggatt 3780 aagcgctcag agctacagtt tgccacaagt gccgtggaaa gtgttgtatc aagaggatgc 3840 cctgaggagg aaactcccaa agaaagcgaa taagacaaac tctccgccta atgtctgatg 3900 atgtgaggaa cgtggactgt gatgtggtgg tgcggtacca tggctggtca ccatggtaat 3960 gcgtagggca acacagttca ttaagactca ctgatgatgg cactaggcac ggttcacccc 4020 catccttcgg gagggctata gggggtgacc gggttacacc accggaagac cggaacattg 4080 cctttgggca gccc 4094 //