ID AF265566; SV 2; linear; genomic RNA; STD; VRL; 6366 BP. XX AC AF265566; XX DT 15-MAY-2001 (Rel. 67, Created) DT 15-JUL-2019 (Rel. 141, Last updated, Version 3) XX DE Maize rayado fino virus isolate Costa Rican, complete genome. XX KW . XX OS Maize rayado fino virus OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6366 RX DOI; 10.1006/viro.2001.0859. RX PUBMED; 11289816. RA Hammond R.W., Ramirez P.; RT "Molecular characterization of the genome of Maize rayado fino virus, the RT type member of the genus Marafivirus"; RL Virology 282(2):338-347(2001). XX RN [2] RP 1-6366 RA Hammond R.W., Ramirez P., Tousignant M.; RT ; RL Submitted (09-MAY-2000) to the INSDC. RL Molecular Plant Pathology Laboratory, U.S. Department of Agriculture, Rm. RL 252 Bldg. 011A BARC-West, Beltsville, MD 20705, USA XX DR MD5; 37ea9a0504903422f31a7cd3c0db3ed3. XX CC On Jul 12, 2019 this sequence version replaced AF265566.1. XX FH Key Location/Qualifiers FH FT source 1..6366 FT /organism="Maize rayado fino virus" FT /isolate="Costa Rican" FT /mol_type="genomic RNA" FT /note="non-envelope virus" FT /db_xref="taxon:59749" FT CDS 127..6213 FT /codon_start=1 FT /product="polyprotein" FT /note="224 kD; contains methyltransferase, helicase, FT protease, replicase, capsid proteins" FT /db_xref="GOA:Q91TW9" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q91TW9" FT /protein_id="AAK52838.2" FT /translation="MSSFLRGGHLLSGVESLTPTTHRDTITAPIVESLATPLRRSLERY FT PWSIPKEFHSFLHTCGVDISGFGHAAHPHPVHKTIETHLLLDVWPNYARGPSDVMFIKP FT EKFAKLQSRQPNFAHLINYRLVPKDTTRYPSTSTNLPDCETVFMHDALMYYTPGQIADL FT FFLCPQLQKIYASVVVPAESSFTHLSLHPELYRFRFQGSDLVYEPEGNPAANYTQPRSA FT LDWLQTTGFTVGHEFFSVTLLDSFGPVHSLLIQRGRPPVFQAEDIASFRVPDAVALPAP FT ASLHQDLRHRLVPRKVYDALFNYVRAVRTLRVTDPAGFVRTQVGKPEYSWVTSSAWDNL FT QHFALQTAAVRPNTSHPLFQSPFARLSHWLRTHTWALWCLASPSASVSAWATASALGRL FT LPLHTDRLRLFGFDIIGRRFWPRLPFHGPEPRFLWETHPACRPPVLFADSAFECQILAG FT LANRCSPSPFWSRLFPTASPPSWVAYSALALAAVPLAALALRWFYGPDSPQALHDQYHA FT TFHPDPWTLDLPRRLRRFERESFMRTGSAPLPLSLPPPEGSLLPVEPPLAPSDPEPALE FT PSPPAASVPAPAPAPASEPPPSPESVAPPVAVVAPAVQPARAPSPSPALLGAELRFGDL FT PPVSAWDSDPEISKLGESTQGTVFAVTPGPRAPEPDTARLDADPSASGPVMEFRELQKG FT AYIEPTGAFLTRARNSVSSSIPYPTRAACLLVAVSQATGLPTRTLWAALCANLPDSVLD FT DGSLATLGLTTDHFAVLARIFSLRCRFVSEHGDVELGLHDATSRFTIRHTPGHFELVAD FT NFSLPALVGASSVPGADLAEACKRFVAPDRTVLPFRDVHIHRTDVRRAKNLISNMKNGF FT DGVMAQANPLDPKSARERFLMLDSCLDIAAPRRVRLIHIAGFAGCGKSWPISHLLRTPA FT FRVFKLAVPTTELRDEWKALMDPRDQDKWRFGTWESSLLKTARVLVIDEVYKMPRGYLD FT LAIHADAAIQFVILLGDPIQGEYHSTHPSSSNARLSPEHRYLRPYVDFYCFWSRRIPQN FT VARVLDVPTTSTEMGFARYSQQFPFFGKILISARDSAKSLADCGYHAVTIASSQGSTIA FT GPAYVHLDNHSRRLSHQHSLVAITRSKSGIVFTGDKAAADGTSSANLLFSAVLLDRRLS FT VRSLFSALLPCCPFVTEPPTSRAVLLRGAGYGVARPLRARDAPPLGPDYVGDVILDSSA FT PILGDGSANAPQVSTHFLPETRRPLHFDIPSARHQVADHPLAPDHSACAIEPVYPGESF FT ESLASLFLPPTDAESKETYFRGEMSNQFPHLDKPFELGAQTSSLLAPLHNSKHDPTLLP FT ASIGKRLRFRHSEAPYVIAPRDEILGSLLYAAACRAYHRSPRDVEPFDPDLYAECINLN FT EFAQLSSKTQATIMANANRSDPDWRWSAVRIFAKTQHKVNEGSLFGSWKACQTLALMHD FT AVVLLLGPVKKYQRFFDQRDRPSTLYVHAGHTPFEMADWCRAHLTPAVKLANDYTAFDQ FT SQHGEAVVFERYKMNRLSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDY FT NIAVLHLEYAVGSTPLMVSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGY FT YVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPY FT QSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHS FT SRRPRSLPEDPEVSQLQGELLHQFQSLHLPLRGGHMPNPLAALFRLLQQSSSLGPTYAV FT APIARAPQVLPPSMADNATQVGPVPPRDDRVDRQPPLPDPPRVLETAPSHFLDLPFQWK FT VTDFTGYAAYHGTDDLSASAVLTTLCAPYRHAELLYVEISVAPCPPSFSKPIMFTVVWT FT PATLSPADGKETDYYGGRQITVGGPVMLSSTTAVPADLARMNPFIKSSVSYNDTPRWTM FT SVPAVTGGDTKIPLATAFVRGIVRVSAPSGAATPSA" FT CDS 332..1594 FT /codon_start=1 FT /product="putative movement protein" FT /note="43 kD" FT /db_xref="GOA:Q91TW8" FT /db_xref="UniProtKB/Swiss-Prot:Q91TW8" FT /protein_id="AAK52839.2" FT /translation="MPLTPTPSTRPSRPTSFSMSGPTTLGVRLTSCSSSLRSSPSSSPD FT SPTSPTSSTTGSCPKTPPGTPPLPRTSRTARPSSCMMLSCITPQGRSLTSFSSVPSSRR FT SMPPLSFRLSRASRISRSIRNFTASVSRVLTLSMSRRATQPPTTRSRVRPSTGSRPPVS FT PLVTSSSPSPFSTLSARSIPSSSSVAALPSFRPKTSLPSAFRTPSPSPLLPPSTRTFVT FT GWSPARCTTRSSIMSEPSAPFGLPTPPASSGLRSASLSTAGSPLPPGTTFSTSRSRPPP FT FVPTPRIPFSSRPSLACPTGFAPTLGRSGAWLPPRPLSLPGPLPVPSAGSSPFTPTVSG FT CSASTSSAGGSGLVSHSMAPSQGSFGRPIQPAARQCSLPTQPLSAKSLLVWQTGVLPPP FT SGRVCSPRPLRRPGSPTQPWP" XX SQ Sequence 6366 BP; 987 A; 2432 C; 1498 G; 1449 T; 0 other; gtcctctgcc cccttcttgc gccggatcgc cgcaaggtcg cattctgcac cagctttcgc 60 tcgtccagaa ccagatcatc ctttcggcct cttttcttcg cactcttctt cgttgcactc 120 ttctagatgt ctagtttcct gcgtggtggt catctcctta gcggagtcga gtcccttacc 180 cccaccaccc atcgcgacac catcactgca cccattgtcg agtcccttgc cactcctctt 240 cgccgatccc tcgaacgcta cccttggtcc atcccaaagg agttccactc gttcctccac 300 acctgcggcg tcgacatctc tggcttcggc catgccgctc acccccaccc cgtccacaag 360 accatcgaga cccacctcct tctcgatgtc tggcccaact acgctcgggg tccgtctgac 420 gtcatgttca tcaagcctga gaagttcgcc aagctccagt cccgacagcc caacttcgcc 480 cacctcatca actaccggct cgtgcccaaa gacaccaccc ggtacccctc cacttccacg 540 aacctcccgg actgcgagac cgtcttcatg catgatgctc tcatgtatta caccccaggg 600 cagatcgctg acctcttttt cctctgtccc cagctccaga agatctatgc ctccgttgtc 660 gttccggctg agtcgagctt cacgcatctc tcgctccatc cggaacttta ccgcttccgt 720 ttccagggtt ctgaccttgt ctatgagccg gagggcaacc cagccgccaa ctacacgcag 780 ccgcgttcgg ccctcgactg gctccagacc accggtttca ccgttggtca cgagttcttc 840 tccgtcaccc ttctcgactc tttcggcccg gtccattccc tcctcatcca gcgtggccgc 900 cctcccgtct ttcaggccga agacatcgct tccttccgcg ttccggacgc cgtcgccctc 960 cccgctcctg cctccctcca ccaggacctt cgtcaccggc tggtcccccg caaggtgtac 1020 gacgcgctct tcaattatgt ccgagccgtc cgcacccttc gggttaccga ccccgccggc 1080 ttcgtccgga ctcaggtcgg caagcctgag tacagctggg tcacctcttc cgcctgggac 1140 aaccttcagc acttcgcgct ccagaccgcc gccgttcgtc ccaacacctc gcatcccctt 1200 ttccagtcgc ccttcgctcg cctgtcccac tggcttcgca cccacacttg ggcgctctgg 1260 tgcctggctt ccccctcggc ctctgtctct gcctgggcca ctgccagtgc cctcggccgg 1320 ctcctccccc ttcacaccga ccgtctcagg ctgttcggct tcgacatcat cggccggagg 1380 ttctggcctc gtctcccatt ccatggcccc gagccaaggt tcctttggga gacccatcca 1440 gcctgccgcc cgccagtgct ctttgccgac tcagcctttg agtgccaaat ccttgctggt 1500 ttggcaaacc ggtgttctcc ctcccccttc tggtcgcgtc tgttccccac ggcctctccg 1560 ccgtcctggg tcgcctactc agccttggcc ctagccgccg tgccgctggc tgcgttggcc 1620 ttgcgctggt tttacggccc ggactctccc caggctcttc acgatcagta tcatgccacc 1680 ttccatcccg acccgtggac tctcgacctt cctcgtcggc tccgccggtt tgagcgcgag 1740 tccttcatgc ggacgggttc cgctcctttg cccctgtcgc tccctcctcc tgaaggctct 1800 cttctcccag ttgagcctcc tcttgccccg agcgatcccg aaccagccct cgagccgtca 1860 cccccagcgg cttcggtccc tgcccctgcc ccagctccag cttcagagcc tcctccttct 1920 cctgagtcgg tcgccccccc cgtcgccgtc gtcgcgcccg ccgtgcagcc tgcgcgggct 1980 ccgtcccctt ctccagcgct tctgggcgcc gagcttcgct tcggggacct tcctcctgtc 2040 tctgcttggg acagtgaccc cgagatctcg aagcttggtg agtccaccca gggcaccgtc 2100 tttgcggtca cccctggccc tcgcgctcct gagccagaca ccgcccgctt ggatgctgat 2160 ccttcagcca gcggtccagt tatggagttt cgtgagcttc agaagggcgc ttacatcgag 2220 ccgactggcg ccttcctcac tcgggcccgc aactcggtgt cctccagcat cccttaccct 2280 acgagggctg cctgtctcct cgtggccgtc agtcaagcga cagggcttcc cacccgcact 2340 ctctgggcag ccctctgcgc caaccttccg gattccgttc tcgacgacgg ttcactcgcc 2400 accctgggcc tcaccaccga ccacttcgcc gtccttgctc gcatcttctc cttgagatgt 2460 cgcttcgtca gcgagcatgg cgacgttgag ctcgggcttc atgatgccac ctctcgcttc 2520 acgatccgcc atacccctgg ccacttcgag ctcgtggctg acaacttctc tcttcccgct 2580 ctcgtcggcg cctcttctgt tccgggcgct gacctagccg aagcgtgcaa gcgttttgtg 2640 gctccggacc gcaccgtcct cccgtttcga gacgtccaca tccatcgcac cgacgtccgc 2700 cgtgccaaga acctcatctc caacatgaag aatggtttcg acggcgttat ggcgcaggcc 2760 aaccctctcg acccgaagag tgcccgagag cggtttctca tgctcgactc ttgcctcgac 2820 atcgctgcgc ctcgccgggt tcgtctgatc cacattgcag gcttcgctgg ttgcgggaaa 2880 tcttggccga tctcccatct gctccgcacc cccgcctttc gcgtcttcaa gctcgccgtt 2940 ccaaccaccg agcttcgcga cgagtggaag gcccttatgg atcctcgtga ccaggacaag 3000 tggcgctttg gcacctggga gtcttccctc ctcaagaccg cccgcgtcct tgtcatcgat 3060 gaggtgtaca agatgcctcg cgggtatctt gatctggcca tccatgcgga cgccgccatt 3120 cagttcgtga tcctgctcgg cgatccgatt caaggcgagt atcactccac acatcccagc 3180 tcctccaacg cccgcctttc tcccgagcac cggtacctcc gcccgtatgt ggacttctac 3240 tgcttctgga gtcgccgcat ccctcagaat gtggcccgcg tcctcgacgt gcccacgacc 3300 tcgactgaga tgggctttgc tcgctactcg cagcagttcc cgttctttgg gaagatcctc 3360 atctcagcgc gcgactccgc caagagcctg gctgattgcg gctaccatgc tgtcactatt 3420 gccagcagtc aggggtccac cattgctggt ccggcctatg tccacctcga taaccactcg 3480 aggcgtctct cacaccagca ttctctcgtc gccatcactc gatccaaatc cggcatagtc 3540 ttcaccggcg acaaggctgc agcggacggc acttcctccg ccaatctcct cttctccgct 3600 gtgctcctcg atcggcgtct ctcggtgcgc tcccttttca gcgcgctcct gccctgctgc 3660 ccgttcgtca cggagcctcc aacgtctcga gccgttctct tgcgtggagc tggctacggc 3720 gtcgctcggc ctcttcgcgc tcgcgacgcc cctcctctcg gccccgatta cgtcggagac 3780 gtcattcttg actcctccgc cccgattctt ggtgacggat cggccaacgc tccccaggtc 3840 agcactcact ttcttccgga gacgcgtcgg cctttgcatt tcgatattcc ttctgcccgt 3900 catcaagtcg ccgatcaccc tctcgcgccc gatcactccg cctgcgccat tgagcccgta 3960 tatcctggtg agagcttcga atctctcgcc tctctctttc tccccccgac ggatgccgag 4020 agcaaggaaa cttacttccg aggggagatg tcgaatcaat tcccccatct cgataagccg 4080 ttcgagttgg gtgcgcagac gtcgagcctc cttgcgccgc ttcacaactc caagcacgac 4140 cctacgctcc tcccggcttc catcgggaag agactgcgct tccgccattc cgaggcaccc 4200 tacgtcatag cccctcgcga cgaaattctg gggtcactcc tctacgcggc cgcgtgtcga 4260 gcctatcacc gttcccctcg ggacgttgag ccgtttgacc cagaccttta tgccgagtgc 4320 atcaacctca acgagtttgc gcagctctct tccaagaccc aggcaaccat catggccaac 4380 gccaaccgca gcgacccaga ctggcgctgg tccgccgttc gcatcttcgc caagacgcag 4440 cataaggtca acgagggctc gcttttcggc tcctggaaag cctgccaaac cctcgctctc 4500 atgcacgatg ctgtcgttct gctccttggc cccgtcaaga agtatcaacg cttcttcgat 4560 cagcgcgatc ggccttccac cctctacgtc cacgcgggcc acactccttt cgagatggcc 4620 gactggtgcc gcgcccatct gacccctgcg gtcaagctgg ccaatgacta caccgctttc 4680 gaccagtcgc agcacggcga ggccgttgtc ttcgagcgct acaaaatgaa tcgcctctca 4740 attcccgccg agctcgttga cctgcacgtc tacctgaaga ccaacgtctc cactcagttt 4800 ggtccgctga cgtgtatgcg cctcactggt gagcccggca cgtacgacga caacaccgat 4860 tacaacattg ccgtgctaca cctcgagtat gctgtcggtt ccactccgct catggtctct 4920 ggtgatgact cgctgctcga ctctgagcct cctgtccgcg accagtggtc tgccattgct 4980 cccatgcttg ctctcacctt caagaaggag cgtggccgtt atgccacctt ttgcggctac 5040 tacgtcggct tcaccggtgc agttcgatcg cccccggccc ttttcgcgaa gctcatgata 5100 gcggtcgatg acggatccat ctctgacaag ctcatcgcct atctcacgga gttcactgtt 5160 ggccattctt ccggcgatgc cttctggacc atcctcccag tcgaggctgt tccttaccag 5220 agcgcctgct tcgacttctt ctgccgtcga gctccggcac aggccaaagt gatgttgcgg 5280 cttggcgagg cacccgagtc cctgctctcc ctggcatttg agggtctgaa gtgggcctcc 5340 cactcggtgt atgccctcat gaactccagt catcgacgcc agctgctcca cagctctcgc 5400 cgcccccgct ctctccccga ggaccctgaa gtttcgcagc ttcagggtga attgcttcat 5460 cagtttcaat cgcttcacct cccgctccgt ggtggccaca tgccaaatcc gcttgccgcg 5520 ctcttcaggc tccttcagca aagcagctcc cttggtccca cttacgcagt cgcccctatc 5580 gctcgggctc cccaggttct tccgccctct atggccgaca atgccaccca agtcgggcct 5640 gttcctcctc gcgacgaccg cgttgatcgc cagcctcctc ttcctgatcc tcctcgtgtg 5700 ctcgagacgg ccccgtcgca cttcctcgac ctccctttcc agtggaaggt cacggacttc 5760 acaggatacg ccgcctacca cggaaccgac gacctgtccg cctccgcggt actgaccaca 5820 ctttgcgcgc cgtaccgcca tgccgagctc ctctacgtcg agatctccgt cgcgccgtgc 5880 cccccttcgt tctccaagcc catcatgttc accgtcgtct ggactccggc cactctgtcc 5940 cccgccgacg gcaaggagac cgactactat gggggccgtc agatcaccgt gggcgggcct 6000 gttatgctgt ccagcaccac cgccgtaccc gctgacctgg cccgcatgaa ccccttcatc 6060 aagtccagcg tctcctacaa cgacacgccc cgctggacca tgtccgtccc cgccgtcact 6120 ggtggggaca ccaagatccc gctcgccacc gccttcgttc gcgggatcgt ccgcgtgtca 6180 gccccctctg gggctgccac cccctctgcc taatccatca gggcagcaat aatgcgagaa 6240 ggaaaactcg cccagccttg agctggtaag ttgttaaaac ctccgcccat ccatgtttgc 6300 aaatctaagg tagcaggtcg gccataagac ctgtgggcca aaaaaaaaaa aaaaaaaaaa 6360 aaaaaa 6366 //