ID AF254924; SV 1; linear; genomic RNA; STD; VRL; 6301 BP. XX AC AF254924; XX DT 16-MAY-2001 (Rel. 67, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 4) XX DE Youcai mosaic virus isolate Shanghai, complete genome. XX KW . XX OS Youcai mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6301 RX DOI; 10.1007/s007050170118. RX PUBMED; 11504428. RA Zhu H., Hong J., Ye R., Chen J., Yu S., Adams M.J.; RT "Sequence analysis shows that ribgrass mosaic virus Shanghai isolate RT (RMV-Sh) is closely related to Youcai mosaic virus"; RL Arch. Virol. 146(6):1231-1238(2001). XX RN [2] RP 1-6301 RA Zhu H., Hong J., Chen J., Yu S.; RT ; RL Submitted (10-APR-2000) to the INSDC. RL Dept. of Microbiology, Fudan University, 220, Han-Dan Road, Shanghai RL 200433, P.R. China XX DR MD5; 910eea832b1df7b82dbde296fcd08236. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6301 FT /organism="Youcai mosaic virus" FT /isolate="Shanghai" FT /mol_type="genomic RNA" FT /db_xref="taxon:228578" FT CDS 69..4862 FT /codon_start=1 FT /transl_except=(pos:3378..3380,aa:OTHER) FT /product="RNA replicase read-through component" FT /db_xref="GOA:Q91PA8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91PA8" FT /protein_id="AAK53541.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFYNYAENPHFVHCDRPFQQCEISTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYRTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELRQKKNVDPDVAAKVMVAIMNSELTLPFKKPTEEEVAEALSGEVVQDEGLSLSNNAP FT FPCVSNLKEGLVPACGLGPKGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGNPVCDETWFRLAVSSDSLVYSDMGKLKTLTACCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRYDGSVMCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLEMYKVESGTQXQLQ FT IDTVFKGTNLFVPTPKSGDWRDMQFYYDTLLPGNSTILNEFDAVTMNLRDISLNVKDCR FT IDFSKSVQVPKERPVFMKPKLRTAAEMPRTAGLLENLVAMIKRNMNAPDLTGTIDIEDT FT ASLVVEKFWDAYVVKEFSGTDGMAMTRESFSRWLSKQESSTVGQLADFNFVDLPAVDEY FT KHMIKSQPKQKLDLSIQDEYPALQTIVYHSKKINAIFGPMFSELTRMLLERIDTSKFLF FT YTRKTPTQIEEFFSDLDSSQAMEILELDISKYDKSQNEFHCAVEYKIWEKLGIDEWLAE FT VWRQGHRKTTLKDYTAGIKTCLWYQRKSGDVTTFIGNTIIIAACLSSMIPMDKVIKAAF FT CGDDSLIYIPKGLDLPDIQAGANLTWNFEAKLFRKKYGYFCGRYVIHHDRGAIVYYDPL FT KLISKLGCKHIRDEVHLEELRRSLCDVTSNLNNCAYFSQLDEAVAEVHKTAVGGAFVYC FT SIIKYLSDKRLFKDLFFV" FT CDS 69..3380 FT /codon_start=1 FT /product="RNA replicase component" FT /db_xref="GOA:Q91PA7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q91PA7" FT /protein_id="AAK53540.1" FT /translation="MAQFQQTVNMQTLQAAAGRNSLVNDLASRRVYDNAVEELNARSRR FT PKVHFSKSVSTEQTLLASNAYPEFEISFTHTQHAVHSLAGGLRTLELEYLMMQVPFGSL FT TYDIGGNFAAHLFKGRDYVHCCMPNLDVRDIARHEGHKEAIFSYLSRLDRQKRPVPEYQ FT RAAFYNYAENPHFVHCDRPFQQCEISTVNGADTYAIALHSIYDIPADEFGAALLRKNVK FT ICYAAFHFHENMLLDCDSVTLEDIGATFQRAGDKLNFFFHNESTLNYTHSFSNIIKYVC FT KTFFPASQRYVYHKEFLVTRVNTWYCKFTRVDTFTLFRGVYRTSVDSEEFYKAMDDAWE FT YKKTLAMLNSERTIFKDSAAMNFWFPKVRDMVIIPLFDASITTGRMSRREVLVNKDFVY FT TVLNHIKTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDTDKAILGPLAMTFFLVT FT KLSHVQDEIVLKKFQKFDATAKELIWSSLCDALKGVIPSVKETLARGGFVKLAEESLEI FT KIPELYCTFTDRLVLEYKRTEEFQSCDLSKPLEESEKYYNALSELSVLENLDSFDLDAF FT KELRQKKNVDPDVAAKVMVAIMNSELTLPFKKPTEEEVAEALSGEVVQDEGLSLSNNAP FT FPCVSNLKEGLVPACGLGPKGANFDRVDMDISEFHLKSVDAVKKGAMMSAVYTGKIKVQ FT QMKNYVDYLSASLSATVSNLCKVLRDVHGVDPESQEKSGVWDVRRGRWLLKPNAKCHAW FT GVAEDANHKLVIVLLNWDEGNPVCDETWFRLAVSSDSLVYSDMGKLKTLTACCRDGEPP FT EPTAKVVLVDGVPGCGKTKEILEKVNFSEDLVLVPGKEASKMIIRRANQAGVTRADKDN FT VRTVDSFLMHPPKRVFKRLFIDEGLMLHTGCVNFLTLLSHCDVAYVYGDTQQIPFICRV FT ANFPYPSHFAKLVVDEKEDRRVTLRCPADVTYFLNTRYDGSVMCTSSVERSVSAEVVRG FT KGALNPITLPLEGKILTFTQADKFELLDKGYKDVNTVHEVQGETYEKTAIVRLTATPLE FT IISRASPHVLVALTRHTTRCKYYTVVLDPMVNVISELGKLSNFLLEMYKVESGTQ" FT gene 4874..5668 FT /gene="MP" FT CDS 4874..5668 FT /codon_start=1 FT /gene="MP" FT /product="movement protein" FT /db_xref="GOA:Q91PA6" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q91PA6" FT /protein_id="AAK53542.1" FT /translation="MSYEPKVSDFLALTKKEEILPKALTRLKTVSISTKDVISVKESES FT LCDIDLLVNVPLDKYRYVGVLGVAFTGEWLVPDFVKGGVTVSVIDKRLENSRESMIGTY FT RAAAKDRRFQFKLVPNYFVSTADAKRKPWQVHVRIQNLKIEAGWQPLALEVVSVAMVTN FT NVVVKGLREKVIAVNDPNVEGFEGVVDDFVDSVAAFKAIDSFRKKKKKIGGRDVNNKYR FT YRPERYAGPDSLQYKEENGLQHHELESVPVFRSDVGRAHSDA" FT gene 5592..6065 FT /gene="CP" FT CDS 5592..6065 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q91PA5" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q91PA5" FT /protein_id="AAK53543.1" FT /translation="MVYNITSSNQYQYFAAMWAEPTAMLNQCVSALSQSYQTQAARDTV FT RQQFSNLLSAIVTPNQRFPETGYRVYINSAVLKPLYESLMKSFDTRNRIIETEEESRPS FT ASEVANATQRVDDATVAIRSQIQLLLNELSNGHGLMNRAEFEVLLPWATAPAT" XX SQ Sequence 6301 BP; 1782 A; 1198 C; 1599 G; 1722 T; 0 other; gttttaattt tattgcaaca acaacaacaa attacaataa caataaaaca aatacaaaca 60 acaacaacat ggcacaattt caacaaacag taaacatgca aacattgcag gctgccgcag 120 ggcgcaacag cctggtgaat gatttagcct cacgacgtgt ttatgacaat gctgtcgagg 180 agctaaatgc acgctcgaga cgccctaagg ttcatttctc caaatcagtg tctacggaac 240 agacgctgtt agcttcaaac gcttatccgg agtttgagat ttcctttact catacccaac 300 atgccgtaca ctcccttgcg ggtggcctaa ggactcttga gttggagtat ctcatgatgc 360 aagttccgtt cggttctctg acgtacgaca tcggtggtaa ctttgcagcg caccttttca 420 aaggacgcga ctacgttcac tgctgtatgc caaacttgga tgtacgtgat atagctcgtc 480 atgaagggca caaagaagcg atcttcagtt acctttctcg cctagatagg cagaagcgac 540 cagtccccga atatcagaga gcggcattct ataactacgc ggagaatcct catttcgttc 600 attgtgaccg accatttcag cagtgtgaga taagcaccgt taacggtgcg gacacttacg 660 ctattgcact tcatagtata tatgatattc ctgctgatga gttcggtgca gcgctactca 720 ggaagaatgt gaaaatttgt tacgcggctt tccatttcca cgaaaatatg ctccttgact 780 gtgactctgt cacactggag gatattggag ccacatttca acgcgctggt gacaagttga 840 atttcttctt ccacaacgag agcacactca attacaccca tagttttagt aatataatta 900 agtacgtgtg taagaccttc tttcctgcga gtcagcgtta tgtgtatcat aaggagtttt 960 tagttactag agttaatacg tggtattgta agtttactag agtcgatact tttactcttt 1020 ttcgtggtgt gtataggaca agtgtggata gcgaggagtt ctacaaggct atggacgacg 1080 cgtgggaata caagaagacc ttggctatgc taaattccga gaggaccatc ttcaaggaca 1140 gtgctgccat gaatttctgg tttccaaagg tcagagatat ggtcatcata cctctctttg 1200 acgcatctat cacaactgga aggatgtcga gaagggaagt gttggtgaac aaggattttg 1260 tttacacagt ccttaaccac atcaaaacct atcaagcaaa ggccttaaca tatgctaatg 1320 tgttatcttt cgttgagtct attaggtcta gagtgataat taacggtgtc actgccaggt 1380 cggaatggga taccgacaag gcaatcttag gtccgttagc catgacattt ttccttgtca 1440 caaagttgag tcatgttcag gacgagatcg tccttaagaa gttccaaaag tttgacgcca 1500 ctgccaaaga actgatttgg tcaagtctct gcgatgccct gaagggggtt ataccctcgg 1560 tcaaggagac tctcgcgcgc ggtggtttcg ttaagcttgc tgaagagagt ttagagatca 1620 aaattccaga gttatattgc acttttaccg acaggttagt gcttgaatat aagaggacag 1680 aggagtttca gtcgtgtgat ctgtccaaac ctttggaaga gtctgagaag tactataatg 1740 cgttatccga gctgtccgtg cttgaaaatc ttgactcgtt tgatctggat gcctttaagg 1800 agttgcgtca aaagaagaac gtcgaccctg atgtcgctgc gaaggtgatg gtggcgatta 1860 tgaatagtga attgacgtta ccgttcaaga aacctacaga agaggaagtt gcagaggcgc 1920 ttagcggaga agtggtgcag gatgaaggat tgagtttgag taacaacgca cccttcccat 1980 gtgtgagtaa cctcaaggag ggtttggttc cggcgtgtgg attgggtccg aaaggtgcga 2040 acttcgacag agtggatatg gacatatctg agttccatct caagagtgta gatgcagtta 2100 aaaagggggc tatgatgtca gcggtgtaca cgggaaagat caaggttcaa cagatgaaga 2160 actacgtcga ttacctaagt gcctcattgt cagctacagt ctcaaacctc tgtaaagtgc 2220 ttagggatgt tcacggagtt gaccctgaat ctcaagagaa gtcgggtgtg tgggacgtga 2280 gaagaggacg ctggttactt aaacctaacg cgaagtgtca tgcttggggt gttgcggaag 2340 atgctaacca caagttagtt atcgtgttac ttaactggga tgaaggaaac cctgtctgtg 2400 atgagacgtg gtttagattg gcagtttcta gcgactcttt ggtgtactct gatatgggta 2460 aactcaagac gttaacggca tgttgcagag atggtgagcc tccggaacct acggccaaag 2520 tggtactcgt tgacggtgtt ccgggctgtg gaaaaacaaa ggaaatcttg gagaaggtta 2580 acttttccga agacttggtg ttggttcctg gaaaagaagc gtcaaaaatg attattcgaa 2640 gagcgaatca ggcaggtgtt acaagagcgg acaaggacaa tgtgaggacg gtagattcct 2700 tcttgatgca ccctccaaaa agggtgttca aaaggttgtt tatcgatgaa ggactaatgc 2760 tgcacacagg ctgtgttaac tttttgacgt tgctatctca ttgtgatgtg gcatacgttt 2820 acggtgacac acagcaaatt ccctttatct gtagggttgc gaattttcct tatccctcgc 2880 atttcgcgaa gcttgttgtc gacgagaagg aagatagaag ggtcacgctc aggtgtccgg 2940 cagacgttac atatttcttg aatacgaggt acgatggatc agtgatgtgt acaagctctg 3000 tggagaggtc ggttagtgcg gaggttgtga gaggaaaagg tgctttaaac ccaataactt 3060 taccgttaga gggaaaaatt ctcaccttca cgcaagccga taagttcgag ttgttggata 3120 agggttacaa agatgtgaac acggttcatg aagttcaggg cgaaacgtac gaaaagacag 3180 cgatcgttcg gttaacagca actcccttgg agatcatatc aagagcgtca cctcatgttt 3240 tggtggcgtt gacaaggcac actactcgat gtaaatatta cacggttgtg ttggacccaa 3300 tggtgaatgt gatttctgaa ctggggaaac tgtccaactt tcttctcgag atgtacaagg 3360 tggagtcggg gacccaatag caattacaga tcgacacagt gttcaaaggg acgaatctgt 3420 ttgtcccgac gcctaagtca ggagattggc gagacatgca gttctattat gacactcttc 3480 ttcccggaaa cagtactatt cttaatgaat ttgatgctgt gacgatgaac ttgagggata 3540 tttccttaaa tgtcaaggac tgtaggatcg acttctcgaa atctgtgcaa gtgccaaaag 3600 aacggccggt tttcatgaaa cctaaattga ggacggcggc agagatgcca cgtactgctg 3660 gtctacttga aaacctcgtc gcgatgatta aaagaaacat gaacgcacca gatttgacag 3720 ggacgattga tatagaggac actgcgtcgt tagtagttga aaagttttgg gatgcttatg 3780 tggtgaaaga attcagcgga acagacggaa tggctatgac aagggaaagt ttttctagat 3840 ggctctctaa acaagagtcg tctacagttg gtcagttagc ggatttcaac tttgtggatt 3900 tgccggcggt ggacgagtac aagcatatga tcaagagcca acccaagcag aagttagact 3960 tgagcattca agacgaatac cctgcattgc agactatagt ctatcattca aaaaagatca 4020 atgcaatttt tggtcctatg ttttcagagt tgacgaggat gctccttgaa agaatagata 4080 cttccaagtt tctgttttac accaggaaga cacccacgca gattgaagag tttttctctg 4140 atttagattc gtcacaagcg atggagattt tggagctcga catttcaaag tatgacaagt 4200 cacaaaacga gttccattgc gctgttgagt acaaaatatg ggaaaagctt ggaattgacg 4260 aatggttagc ggaggtgtgg agacaaggac acaggaaaac gacgctcaag gactacacgg 4320 ctggcattaa gacatgtttg tggtaccaaa ggaaaagcgg tgacgtgact accttcattg 4380 ggaacacaat tatcattgca gcgtgtttaa gttctatgat cccgatggac aaagtgatca 4440 aggcggcttt ctgcggtgac gacagtttga tatatattcc gaaaggtcta gacctaccgg 4500 atattcaagc cggagccaac cttacgtgga actttgaggc caaattgttc aggaaaaagt 4560 acgggtattt ttgcggtcgt tacgttattc accacgatag aggagctatt gtatattatg 4620 atccgcttaa gttgatatct aaattaggat gtaaacatat tagagatgaa gttcacttag 4680 aagagttgcg tagatctctg tgtgatgtaa ctagtaattt aaataattgt gcgtattttt 4740 cacagttaga tgaggccgtt gccgaggttc ataagaccgc ggttggcgga gcgtttgttt 4800 actgtagtat aattaaatat ttgtcagata aaaggttgtt taaagatttg ttttttgttt 4860 gactgagtcg ataatgtctt acgagcctaa agttagtgac ttccttgctc ttacgaaaaa 4920 ggaggaaatt ttacccaagg ctttgacgag attaaagact gtctctatta gtactaagga 4980 tgttatatct gttaaggagt ctgagtccct gtgtgatatt gatttgttag tgaatgtgcc 5040 attagataag tataggtatg tgggtgtttt gggtgttgct ttcaccggtg aatggctggt 5100 accggatttc gttaaaggtg gggtaacagt gagcgtgatt gacaaacggc ttgaaaattc 5160 cagagagtcc atgattggta cgtaccgagc tgctgcaaag gacagaaggt tccagttcaa 5220 gctggttcca aattacttcg tatccactgc ggatgccaag cgaaaaccgt ggcaggttca 5280 tgtgcgaatt caaaatctga agatcgaagc tggatggcaa cctctagctc tagaggtggt 5340 ttctgttgcc atggttacta ataacgtggt tgttaaaggt ttgagggaaa aggtcatcgc 5400 agtgaatgat ccgaacgtcg aaggtttcga aggtgtggtt gacgatttcg tcgattcggt 5460 tgctgcattc aaggcgattg acagtttcag aaagaaaaag aaaaagattg gaggaaggga 5520 tgtaaataat aagtatagat atagaccgga gagatacgcc ggtcctgatt cgttacaata 5580 taaagaagaa aatggtttac aacatcacga gctcgaatca gtaccagtat ttcgcagcga 5640 tgtgggcaga gcccacagcg atgcttaacc agtgcgtgtc tgcgttgtcg caatcgtatc 5700 aaactcaggc ggcaagagat actgttagac agcagttctc taaccttctg agtgcgattg 5760 tgacaccgaa ccagcggttt ccagaaacag gataccgggt gtatattaat tcagcagttc 5820 taaaaccgtt gtacgagtct ctcatgaagt cctttgatac tagaaatagg atcattgaaa 5880 ctgaagaaga gtcgcgtcca tcggcttccg aagtagctaa tgcaacacaa cgtgttgatg 5940 atgcgaccgt ggccatcagg agtcaaattc agcttttgct gaacgagctc tccaacggac 6000 atggtctgat gaacagggca gagttcgagg ttttattacc ttgggctact gcgccagcta 6060 cataggcgtg gtgcacacga tagtgcatag tgtttttctc tccacttaaa tcgaagagat 6120 atacttacgg tgtaattccg caagggtggc gtaaaccaaa ttacgcaatg ttttaggttc 6180 catttaaatc gaaacctgtt atttcctgga tcacctgtta acgtacgcgt ggcgtatatt 6240 acagtgggaa taactaaaag tgagaggttc gaatcctccc taaccccggg taggggcccc 6300 a 6301 //