ID AF252610; SV 1; circular; genomic DNA; STD; VRL; 2037 BP. XX AC AF252610; XX DT 09-JUN-2000 (Rel. 64, Created) DT 18-JAN-2001 (Rel. 66, Last updated, Version 7) XX DE Columbid circovirus (CoCV), complete genome. XX KW . XX OS Columbid circovirus OC Viruses; Circoviridae; Circovirus. XX RN [1] RP 1-2037 RX DOI; 10.1007/s007050070002. RX PUBMED; 11205099. RA Mankertz A., Hattermann K., Ehlers B., Soike D.; RT "Cloning and sequencing of columbid circovirus (coCV), a new circovirus RT from pigeons"; RL Arch. Virol. 145(12):2469-2479(2000). XX RN [2] RP 1-2037 RA Mankertz A., Hattermann K., Ehlers B., Soike D.; RT ; RL Submitted (05-APR-2000) to the INSDC. RL P24, Robert Koch Institut, Nordufer 20, Berlin 13353, Germany XX DR MD5; 76d917a7e0709d5708a5f6d2f916d3df. DR EuropePMC; PMC2812408; 20007276. DR EuropePMC; PMC3133700; 21177928. DR EuropePMC; PMC3198713; 21978576. DR EuropePMC; PMC3647419; 23628223. DR EuropePMC; PMC5165205; 27795441. DR EuropePMC; PMC6160883; 30078831. XX FH Key Location/Qualifiers FH FT source 1..2037 FT /organism="Columbid circovirus" FT /host="pigeon" FT /mol_type="genomic DNA" FT /db_xref="taxon:126070" FT rep_origin join(<2009..2037,1..>26) FT /note="putative stem loop structure required for FT replication" FT misc_feature join(2031..2037,1..2) FT /note="sequence conserved in circoviridae, geminiviridae FT and nanoviridae" FT CDS complement(join(2036..2037,1..292)) FT /codon_start=1 FT /product="unknown" FT /note="ORFC3; 10 kDa" FT /db_xref="UniProtKB/Swiss-Prot:Q9IG41" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAF74199.1" FT /translation="MHKTLQMRGPLLPDLLPHNGIVEVTHQPRFQALNLFFSGVVQSEA FT PSLCCSLAGGSTGRFATGAAFGGGHAALGGVAAWFARSHIAARCGSVAPSRG" FT repeat_region 17..32 FT /rpt_type=INVERTED FT /note="potential binding site for replicase" FT repeat_region complement(36..51) FT /rpt_type=INVERTED FT /note="potential binding site for replicase" FT CDS 41..994 FT /codon_start=1 FT /gene="rep" FT /product="replicase" FT /note="Rep; 36.3 kDa" FT /db_xref="GOA:Q9IG45" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR003365" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:Q9IG45" FT /protein_id="AAF74196.1" FT /translation="MAPCKPGSNPPKGRVSAAEGGARREATRRPPREAAAKRWCFTLNN FT PTEEEIKSLETWLVSDFHYAIVGKEVGEQGTPHLQGFVHLKQKKRLPQLKQLFKRAHWE FT KARGSDEDNEKYCSKEGNVLLTLGIPAKGNRSDLSEAVAAVKAGRAMTEVARDFSEIYV FT KYGRGLRDLKLLIGQQPRDFKTEVIVITGPPGCGKSRWAADYPGSKFYKMKGEWWDGYD FT HQEVVIIDDFYGWLPFCELLRVTDRYPHKVPVKGAFVEFTSRVIIVTSNSPPDAWYSEE FT RCCVQALFRRINKWLVWNHDKFEDAPDCMKKYPINY" FT repeat_region complement(43..48) FT /rpt_type=DIRECT FT /note="potential binding site for replicase" FT CDS complement(410..790) FT /codon_start=1 FT /product="unknown" FT /note="ORFC2; similar to 13.7 kDa BFDV ORF3 protein" FT /db_xref="UniProtKB/Swiss-Prot:Q9IG44" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAF74198.1" FT /translation="MRVPVGHTQQLTEGQPAVEVINDDYFLVVVPVPPFTLHLVEFTSG FT VVSCPTALPATGRARDDDDFRFEVTGLLTNQQLQVAQATPIFDVYLTEVSRDLGHCSSG FT FHRGNSLAEIAPVSLRRNAQGK" FT CDS complement(736..984) FT /codon_start=1 FT /product="unknown" FT /note="ORFC4; 8.9 kDa; similar to large polymerase protein FT of newcastle disease virus CAB51327" FT /db_xref="UniProtKB/Swiss-Prot:Q9IG43" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAF74200.1" FT /translation="MGYFFIQSGASSNLSWFQTSHLLIRRKSAWTQHLSSLYQASGGLL FT LVTIITRDVNSTKAPFTGTLCGYRSVTRSSSQKGSQP" FT CDS complement(1166..1987) FT /codon_start=1 FT /transl_except=(pos:1985..1987,aa:Met) FT /gene="cap" FT /product="capsid protein" FT /note="Cap; 31.9 kDa; protein translation starts with an FT alternative start codon" FT /db_xref="GOA:Q9IG42" FT /db_xref="InterPro:IPR003383" FT /db_xref="InterPro:IPR038652" FT /db_xref="UniProtKB/Swiss-Prot:Q9IG42" FT /protein_id="AAF74197.1" FT /translation="MRRRRFRRRRAPIRRRRIRRRRTRLSRNIRGHRRSSRIYYFRLRR FT KDKITLTQATNDFKFGTGIFTFKLADVLTVGLNAPTLKVPFEDYQIALVKVEMRPLGVD FT ITTWKGFGHTVPMYDARLKTFQGQVDLGDDPLMDFDGARKWDLRKGFKRLIRPRPQLTI FT ADLATANQSAATWFSGRNQWIPLQVSGNSLFPQKVNHYGLAFSYLQPQPDPMYYECEVT FT FYVKFRQFAWTTLNVPPTPNIEGMELMHICNGDCNQCFADALDPDSAVDSE" FT repeat_region complement(1562..1567) FT /rpt_type=DIRECT FT /note="potential binding site for replicase" FT repeat_region complement(2014..2019) FT /rpt_type=DIRECT FT /note="potential binding site for replicase" XX SQ Sequence 2037 BP; 464 A; 545 C; 588 G; 440 T; 0 other; acccgcgact tggagccacg gagccacatc gcgcagcgat atggctccgt gcaaaccagg 60 cagcaacccc cccaagggcc gcgtgtccgc cgccgaaggc ggcgcccgtc gcgaagcgac 120 ccgtcgaccc ccccgcgagg ctgcagcaaa gcgatggtgc ttcactttga acaaccccac 180 tgaagaagag attaagagcc tggaaacgtg gctggtgagt gacttccact atgccattgt 240 ggggaaggag gtcggggagc aggggacccc gcatctgcaa ggttttgtgc atctaaagca 300 gaagaagcgg ttgccgcaac ttaagcagct ttttaagcgt gcgcattggg agaaagcgcg 360 cggcagtgat gaggacaatg agaagtactg ctctaaagag ggtaatgtgc tacttaccct 420 gggcattcct gcgaagggaa accggagcga tctcagcgag gctgttgccg cggtgaaagc 480 cggaagagca atgaccgagg tcgcgcgaga cttcagtgag atatacgtca aatatgggcg 540 tggcttgcgc gacctgaagc tgctgattgg tcagcagccc cgtgacttca aaacggaagt 600 catcgtcatc acgggcccgc ccggttgcgg gaagagccgt tgggcagctg actaccccgg 660 aagtaaattc tacaagatga agggtgaatg gtgggacggg tacgaccacc aggaagtagt 720 catcattgat gacttctacg gctggctgcc cttctgtgag ctgctgcgtg tgaccgaccg 780 gtacccgcat aaggtgcccg tgaaaggggc ctttgtggag ttcacgtctc gcgtgataat 840 agtgaccagc aacagtcccc ccgatgcctg gtacagcgag gaaaggtgct gtgtccaggc 900 gctcttccgg cggatcaaca agtggctggt ctggaaccac gacaagttcg aagatgctcc 960 ggattgtatg aagaagtacc ccatcaacta ttagcccccc acccccatga cactagtaaa 1020 gggacccaag ccagccgagc cggccgcgcc cgcgagcgaa gcgagcggcc gcgcggcctg 1080 gcgagtctgg cgggtccgga gcggagcgac cgcgaatgcg ggagcgaagc gactacactc 1140 gaaaatgaat ttgcaataaa aggctttatt cagaatccac agctgagtct gggtctaatg 1200 catctgcaaa acactggtta caatccccat tacaaatatg catcaattcc atgccctcaa 1260 tgttgggggt cggggggaca ttgagggtgg tccaagcaaa ctgcctgaac ttgacataga 1320 aggtcacttc acattcataa tacatggggt ctggttgggg ttgcaggtaa ctgaatgcga 1380 gcccatagtg attaactttc tggggaaaca agctgttgcc tgatacctgc agtggtatcc 1440 actggtttct ccctgagaac catgttgctg ccgactggtt tgccgtagcc agatccgcga 1500 ttgttagttg aggtcgtggc cttatgaggc gtttaaaccc ctttctcaaa tcccattttc 1560 tggctccgtc aaagtccatg agggggtcat ctcccaagtc cacctgccct tgaaaggttt 1620 tcagcctggc atcatacatc gggacagtgt gcccgaatcc tttccatgtc gtgatgtcaa 1680 cgcctagtgg tctcatttcc accttcacta acgcaatctg atagtcctca aatgggactt 1740 tcagcgttgg cgcgttaaga cccactgtga gtacatccgc gagtttgaat gtaaatatgc 1800 cagtaccgaa tttgaaatca ttggtcgcct gtgtcaatgt gatcttgtcc ttgcgacgta 1860 ggcggaagta gtaaatacgg ctactcctcc tgtggccacg tatgttccgg gagaggcgtg 1920 tccttcgtct cctgatccgg cgtcggcgaa tgggcgccct cctccggcgg aatctccgcc 1980 tccttatctg cggaagtgcg acgtcacttc cgtggctcca agtcgcggct tagtatt 2037 //