ID   AF239961; SV 1; linear; genomic DNA; STD; VRL; 2690 BP.
XX
AC   AF239961;
XX
DT   08-AUG-2000 (Rel. 64, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Maize streak virus - A[Vaalhart maize], complete genome.
XX
KW   .
XX
OS   Maize streak virus - A[Vaalhart maize]
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2690
RA   Willment J.A., Martin D.P., Rybicki E.P.;
RT   "Characterization of three maize streak viruses";
RL   Unpublished.
XX
RN   [2]
RP   1-2690
RA   Willment J.A., Rybicki E.P.;
RT   ;
RL   Submitted (01-MAR-2000) to the INSDC.
RL   Microbiology, University of Cape Town, Private Bag, Rondebosch, Cape 7701,
RL   South Africa
XX
DR   MD5; cbc4ba4f261a1fdd06b5e5e5afdf352b.
DR   EuropePMC; PMC1262190; 16244707.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2690
FT                   /organism="Maize streak virus - A[Vaalhart maize]"
FT                   /isolate="VM"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:268940"
FT   stem_loop       20..2655
FT   gene            150..455
FT                   /gene="V1"
FT   CDS             150..455
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="movement protein"
FT                   /db_xref="GOA:Q9IGZ3"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IGZ3"
FT                   /protein_id="AAF97757.1"
FT                   /translation="MDPQNSFFVQPRVPTAAPTSGGVSWSRVGEVAILSFVALICFYLL
FT                   YLWVLRDLILVLKARQGRSTEELIFGGQGVDRSNPIPNLPAPPSQGNPGPFVPGTG"
FT   gene            466..1200
FT                   /gene="V2"
FT   CDS             466..1200
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9IGZ2"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IGZ2"
FT                   /protein_id="AAF97758.1"
FT                   /translation="MSTSKRKRGDDSNWNKRVPKKKPSSAGLKRAASKADRPSLQIQTL
FT                   QHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAVDYHFVADAAACRYSNT
FT                   GTGVMWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMET
FT                   DGRIGSDIPPSNTSWKPCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAP
FT                   GNGLTFTAHGQTRLYFKSVGNQ"
FT   gene            complement(1369..2528)
FT                   /gene="C1/C2"
FT   CDS             complement(join(1369..1794,1887..2528))
FT                   /codon_start=1
FT                   /gene="C1/C2"
FT                   /product="Rep"
FT                   /note="replication associated protein"
FT                   /db_xref="GOA:Q9IGZ1"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IGZ1"
FT                   /protein_id="AAF97760.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHCTSKEEYLSMIQKELPF
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQSSDERSRK
FT                   QSLYIVGPTRTGKSTWARSLGVHNYWQNNVDWSSYNEDAIYNIVDDIPFKFCPCWKQLV
FT                   GCQRDFIVNPKYGKKKKVQKKSKPTIILANSDEDWMKEMTPGQLEYFEANCIIYIMSPG
FT                   EKWYSPPVLPPTEEV"
FT   gene            complement(1710..2528)
FT                   /gene="C1"
FT   CDS             complement(1710..2528)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="RepA"
FT                   /note="replication associated protein A"
FT                   /db_xref="GOA:Q9IGZ0"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IGZ0"
FT                   /protein_id="AAF97759.1"
FT                   /translation="MASSSSNRQFSHRNANTFLTYPKCPENPEIACQMIWELVVRWIPK
FT                   YILCAREAHKDGSLHLHALLQTEKPVRISDSRFFDINGFHPNIQSAKSVNRVRDYILKE
FT                   PLAVFERGTFIPRKSPFLGKSDSEVKEKKPSKDEIMRDIISHCTSKEEYLSMIQKELPF
FT                   DWSTKLQYFEYSANKLFPEIQEEFTNPHPPSSPDLLCNESINDWLQPNIFQVSAEAYML
FT                   LQPTCYTLEDAISDLQWMDSVSSHQMKDQESRASTSSAQQEPENLLGPEA"
XX
SQ   Sequence 2690 BP; 693 A; 629 C; 686 G; 682 T; 0 other;
     accgcgcctt cttttcctgc gagggcccgg tagggaccga gcgctttgat ttaaagtttg        60
     gtcctgcttt gtttgattta tctaaagcag cccaatctaa agaaaccggt cccgggcact       120
     ataaattgcc taacaagtgc gattcattca tggatccaca gaactccttc tttgtacagc       180
     cgcgggtacc cacagcagct ccgacatccg gaggagtgtc gtggagtcgc gtaggcgagg       240
     tagctatttt gagctttgtt gcattgattt gcttttacct gctttacctt tgggtgctga       300
     gagaccttat cttagttctg aaggctcgac aaggcagatc cacggaggag ctgatatttg       360
     gaggacaagg tgtggatagg agcaacccta tccctaatct accagcacca ccaagtcagg       420
     gcaatcccgg gccatttgtt ccaggcacgg gataagcaat cagccatgtc cacgtccaag       480
     aggaagcggg gagatgattc gaattggaat aagcgggtgc ctaagaagaa gccatcttca       540
     gctggtctga agagggctgc aagcaaggcc gataggccat ccctccaaat ccagacactc       600
     cagcatgctg ggaccaccat gataacggtc ccatccggag gagtatgtga cctcatcaac       660
     acctatgccc gaggatctga cgagggcaac cgccacacca gcgagactct gacgtacaag       720
     attgccgtcg actaccactt cgttgctgac gcggcagcct gccgctactc caacaccgga       780
     accggtgtaa tgtggctggt gtatgacacc actcccggcg gacaagctcc gaccccgcaa       840
     actatatttg cctaccctga cacgctaaaa gcgtggccgg ccacatggaa agtgagccgg       900
     gagctgtgtc atcgcttcgt ggtgaaacgg cgatggttgt tcaacatgga gaccgacggt       960
     cggattggtt cggatatccc tccttcgaat acaagttgga agccttgcaa gcgcaacatc      1020
     tacttccaca agttcacgag tgggttggga gtgagaacgc agtggaagaa tgtaacggac      1080
     ggaggagttg gtgccatcca gagaggagcg ctgtatatgg ttattgcccc cggcaatggc      1140
     cttacattta ctgcccatgg gcagacccgt ctgtacttta agagtgttgg caaccagtaa      1200
     tgaataaaaa cgcccgtttt attatatctg atgaatgctg aaagcttaca ttaatatgtc      1260
     gtgcgatggc acgaaaaaac acacgcaatc aatacagggg ggtagtcggc gggcggctaa      1320
     gggtggtgct cggcgggcaa aacatcgaaa aatcaagatc tatatgaatt acacttcctc      1380
     cgtaggagga agcacagggg gagaatacca cttctcccct ggcgacataa tgtaaatgat      1440
     gcagtttgcc tcgaaatact ccagctgccc tggagtcatt tccttcatcc aatcttcatc      1500
     cgagttggcg aggattattg taggcttaga cttcttctgc acctttttct tcttaccata      1560
     cttggggttt acaatgaaat ccctctgaca gccaactaac tgtttccaac aaggacagaa      1620
     tttaaacgga atatcatcta cgatgttgta gattgcgtct tcgttgtatg aagaccaatc      1680
     aacattattt tgccagtaat tatgaacccc taggcttctg gcccaagtag attttccggt      1740
     tcttgttggg ccgacgatgt agaggctctg ctttcttgat ctttcatctg atgactggat      1800
     acagaatcca tccattggag gtcagaaatt gcatcctcga gggtataaca ggtaggttga      1860
     aggagcatgt aagcttcggc actaacctgg aagatgttag gctggagcca atcattgatt      1920
     gactcattac aaagtaaatc aggtgaggag ggtggatgag gattggtgaa ctcttcctga      1980
     atctcaggaa aaagcttatt tgcagagtat tcaaaatact gcaattttgt ggaccaatca      2040
     aagggaagct ctttctggat catggagagg tactcttctt tggaagtaca gtgtgaaata      2100
     atgtctcgca ttatttcatc tttggaaggc tttttttcct ttacctctga atcggatttt      2160
     cctaggaagg gggacttcct aggaatgaaa gtacctctct caaacacagc cagaggttcc      2220
     ttgagaatgt aatccctcac cctgttaact gacttggcac tctgaatatt tgggtgaaac      2280
     ccatttatat caaagaacct tgagtcagat atccttaccg gcttctctgt ctgaagcaat      2340
     gcatgtaaat gcaaacttcc atctttatgt gcctctcggg cacatagaat gtacttggga      2400
     atccaacgaa cgacgagctc ccagatcatc tgacaggcga tttcaggatt ttctggacac      2460
     tttggatagg ttaggaacgt gtttgcgttc ctgtgtgaga actgacggtt ggatgaggag      2520
     gaggccatag ccgacgacgg aggttgaggc tgagggatgg cagactggga gctccaaact      2580
     ctatagtata cctgtgcgcc ttcgaaatcc gccgctccct tgtcttatag tggttgtaaa      2640
     tgggccggac cgggccggcc cagcaggaaa agaaggcgcg cactaatatt                 2690
//