ID   AF239671; SV 1; circular; genomic DNA; STD; VRL; 2624 BP.
XX
AC   AF239671;
XX
DT   22-MAR-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   Rhynchosia Golden Mosaic Virus DNA A, complete sequence.
XX
KW   .
XX
OS   Rhynchosia golden mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2624
RA   Potter J.L., Roca de Doyle M.M., Nakhla M.K., Maxwell D.P.;
RT   "First Report and Characterization of Rhynchosia Golden Mosaic Virus in
RT   Honduras";
RL   Unpublished.
XX
RN   [2]
RP   1-2624
RA   Potter J.L., Roca de Doyle M.M., Nakhla M.K., Maxwell D.P.;
RT   ;
RL   Submitted (25-FEB-2000) to the INSDC.
RL   Plant Pathology, University of Wisconsin-Madison, 1630 Linden Dr., Madison,
RL   WI 53706, USA
XX
DR   MD5; a7f42c6f55eeaec383fcad9239f68469.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2624
FT                   /organism="Rhynchosia golden mosaic virus"
FT                   /segment="DNA A"
FT                   /host="Rhynchosia minima"
FT                   /mol_type="genomic DNA"
FT                   /country="Honduras:Comayagua Valley"
FT                   /clone="prhya_sp; prhyb5"
FT                   /note="symptomatic Rhynchosia plant collected in July 1999"
FT                   /db_xref="taxon:117198"
FT   rep_origin      join(2493..2624,1..17)
FT                   /note="common region"
FT   gene            209..964
FT                   /gene="cp"
FT                   /note="av1"
FT   CDS             209..964
FT                   /codon_start=1
FT                   /gene="cp"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9IZ98"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IZ98"
FT                   /protein_id="AAF44668.1"
FT                   /translation="MPKRDAPWRLSAGTSKVSRSANYSPGGGMGPKSNRANAWVNRPMY
FT                   RKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVTHVGKVLCISDITRGSGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFRLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVMHKFYTKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAAKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRVYFYDSIMN"
FT   gene            complement(961..1359)
FT                   /gene="ac3"
FT   CDS             complement(961..1359)
FT                   /codon_start=1
FT                   /gene="ac3"
FT                   /product="replication enhancement protein"
FT                   /db_xref="GOA:Q9IZ97"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IZ97"
FT                   /protein_id="AAF44671.1"
FT                   /translation="MDSRTGEPITACQATNGVFIWEIQNPLYFKIIKVEQPLHTHSKVF
FT                   PIQIRATHNLRRALGLHKAFFNFQVWTTLTTASGPIYLSRFKLLVMSYLDSLGVISVNN
FT                   VIRAVRFATDKHYVNDVLENHEIKYNIY"
FT   gene            complement(1106..1522)
FT                   /gene="trap"
FT                   /note="ac2"
FT   CDS             complement(1106..1522)
FT                   /codon_start=1
FT                   /gene="trap"
FT                   /product="trap protein"
FT                   /note="transactivation protein"
FT                   /db_xref="GOA:Q9IZ96"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IZ96"
FT                   /protein_id="AAF44670.1"
FT                   /translation="MTGHRKTPSSSPLKSHSTPPSIKPRHRYAKRQTRRKRIDLHCGCS
FT                   IYVHINCANHGFTHRGTHHCMSGNEWRFYLGNSKSPVFQDHQSGAAPTHTQQGVPHSNP
FT                   SDPQPPESVGSPQSLLQFPSLDDIDDSFWADLFK"
FT   gene            complement(1416..2492)
FT                   /gene="rep"
FT                   /note="ac1"
FT   CDS             complement(1416..2492)
FT                   /codon_start=1
FT                   /gene="rep"
FT                   /product="rep protein"
FT                   /note="replication-associated protein"
FT                   /db_xref="GOA:Q9IZ95"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IZ95"
FT                   /protein_id="AAF44669.1"
FT                   /translation="MPQPRRFRINAKNFFLTYPQCSIPKEDALEQLQCLSTPVNKKYIK
FT                   ICRERHEDGQPHLHVLIQFEGKYQCTNNRFFDLVSSTRSAHFHPNIQGAKSSSDVKSYI
FT                   DKDGDTIEWGDFQIDGRSARGGQQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQYH
FT                   NLITNATRIFQKQPEPWVPPFNQSSFNNAPALITQWVNQNVCDSAARPLRPISIVIEGP
FT                   SRTGKTQWARSLGPHNYLCGHLDLKPKIYSNDAWYNVIDDVTPHYLKHFKEFMGAQRDW
FT                   QSNCKYGKPIQIKGGIPAIFLCNPGPHSSYKEYLSEEKNKGLNDWAQKNAIFVTIEEPF
FT                   YTTLNQASSQIREETDEA"
XX
SQ   Sequence 2624 BP; 635 A; 528 C; 646 G; 815 T; 0 other;
     accggatggc cgaccgctgt acaacccccc ccctttggcg cactcaccgc ttgtcgtaca        60
     actttatttt gaattaaaga tatttctttt gcgacgccat atgatattgc gtctggcgag       120
     cctagttatc cgcttccaac ttagtgcgca agttgttgac tgtctgctat ttaaattcaa       180
     attgtggagc cagcgtcttt aattcaaaat gcctaagcgg gatgctccgt ggcgtttgag       240
     tgcggggacc tcaaaggtgt cccgttctgc caattactcc cctggtggag gtatgggccc       300
     taaatccaac agggccaatg cttgggttaa caggcccatg tacaggaagc caaggatata       360
     tcggatgtac agatctcccg atgttccgaa agggtgtgaa gggccttgta aggtgcagtc       420
     ctttgaatca cgacatgacg ttactcatgt tggtaaggtt ctgtgtatat ccgacattac       480
     acgtgggagt ggtattaccc atcgtgttgg taagcgtttt tgtgtgaagt ctgtgtacat       540
     tttgggtaag atatggatgg acgagaatat caagctcaag aaccacacca atagcgttat       600
     gtttcggttg gtgagggata gaagacccta tggtactccc atggatttcg gtcaagtgtt       660
     caacatgttt gacaatgaac ccagtactgc cacagttaag aacgatttgc gtgaccgtta       720
     tcaagttatg cacaagttct atactaaggt tactggtgga caatatgcga gcaacgagca       780
     agccctggtt aagcgttttt ggaaggttaa caactacgtg gtgtacaacc atcaggaagc       840
     cgcaaagtac gagaatcaca cggaaaacgc tttgttattg tatatggcat gtactcatgc       900
     gtctaatcct gtgtatgcta ccttgaaaat tcgggtctat ttttatgact cgataatgaa       960
     ttaataaata ttgtatttta tttcatgatt ttcaagtaca tcatttacat aatgcttatc      1020
     cgtcgcgaaa cgaacagctc tgattacatt gttaactgaa ataacgccta agctatctaa      1080
     atacgacatt acaagtaatt tgaatctact taaataaatc ggcccagaag ctgtcgtcaa      1140
     tgtcgtccag acttggaaat tgaagaaggc tttgtggaga cccaacgctc tccggaggtt      1200
     gtgggtcgct cggatttgaa tggggaacac cttgctgtgt gtgtgtaggg gctgctccac      1260
     tttgatgatc ttgaaataca ggggattttg aatttcccag ataaaaacgc cattcgttgc      1320
     ctgacatgca gtgatgggtt cccctgtgcg tgaatccatg attggcgcag ttgatgtgaa      1380
     cgtatattga acagccgcaa tgtaggtcaa tccttttacg cctcgtctgt ctcttcgcgt      1440
     atctgtgacg aggcttgatt gagggtggtg tagaatggct cttcaatggt gacgaagatg      1500
     gcgtttttct gtgcccagtc attgagcccc ttgttcttct cttcgctgag gtactcctta      1560
     tatgatgaat gggggccagg attgcagagg aagatagcgg gaattccacc tttaatttga      1620
     attggctttc cgtatttgca gtttgattgc caatccctct gggcccccat gaactcttta      1680
     aagtgtttca gataatgcgg agttacgtca tcgattacgt tataccatgc atcattggag      1740
     tagatcttcg gcttgagatc gagatgacca cataggtaat tgtgaggacc gagacttcgg      1800
     gcccattgtg ttttgcccgt tcttgatgga ccctcaataa cgatcgatat aggtctcaat      1860
     ggccgcgcag cggaatcaca aacgttttga ttaacccatt gcgtaattaa tgccggagca      1920
     ttattgaacg atgattgatt aaatggaggg acccatggtt ccggttgttt ttggaatatc      1980
     cttgttgcgt ttgtgattag gttatgatat tgaaggaaga aatgttgtgg ttgttcttcc      2040
     ttgattatct gcagagcctc ttctgcagac gatgcgttta atgccttggc gtatgtgtca      2100
     ttagcagatt gctgacctcc tctagcagat ctgccgtcga tttggaaatc tccccattcg      2160
     attgtatctc catccttgtc gatgtaggac ttgacatcgg agctggattt agctccctgt      2220
     atgttcggat ggaaatgtgc tgacctggtt gaggatacca ggtcgaagaa tctgttattc      2280
     gtgcactggt atttgccttc gaattgaatg agcacgtgta gatgaggttg cccatcttca      2340
     tgtctttctc tgcatatctt gatgtatttc ttgttgactg gagttgagag gcactgtagt      2400
     tgttcgagag cgtcttcttt aggaatggaa cactgaggat atgtgaggaa gaagttcttg      2460
     gcatttatgc gaaagcgcct cggttgtggc atttttgtaa taagaagggt gtaccccgat      2520
     tgaggctctc tcaaactggc tgattctatc ggtgtatcgg tatccaatat atagcttctt      2580
     tctttgtagc tctttttaca cgtggaggcc atccgtataa tatt                       2624
//