ID   AF239159; SV 2; linear; genomic DNA; STD; VRL; 2706 BP.
XX
AC   AF239159;
XX
DT   28-JUN-2000 (Rel. 64, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE   Sugarcane streak Egypt virus - [Naga], complete genome.
XX
KW   .
XX
OS   Sugarcane streak Egypt virus - [Naga]
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2706
RX   DOI; 10.1016/S0166-0934(00)00272-X.
RX   PUBMED; 11164917.
RA   Shamloul A.M., Abdallah N.A., Madkour M.A., Hadidi A.;
RT   "Sensitive detection of the Egyptian species of sugarcane streak virus by
RT   PCR-probe capture hybridization (PCR-ELISA) and its complete nucleotide
RT   sequence";
RL   J. Virol. Methods 92(1):45-54(2001).
XX
RN   [2]
RP   1-2706
RA   Shamloul A.-M.M., Hadidi A.F., Madkour M.A., Abdallah N.A.;
RT   ;
RL   Submitted (24-FEB-2000) to the INSDC.
RL   Fruit Lab, PSI, 10300 Baltimore Ave, Beltsville, MD 20705, USA
XX
DR   MD5; 3db886ae973c5f8231c68c7b41464fa8.
DR   EuropePMC; PMC2777162; 19903330.
XX
CC   On Jun 27, 2000 this sequence version replaced gi:8571399.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2706
FT                   /organism="Sugarcane streak Egypt virus - [Naga]"
FT                   /strain="Naga Hammady"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:268787"
FT   gene            132..449
FT                   /gene="V1"
FT   CDS             132..449
FT                   /codon_start=1
FT                   /gene="V1"
FT                   /product="putative movement protein"
FT                   /db_xref="GOA:Q9IH25"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IH25"
FT                   /protein_id="AAF76870.1"
FT                   /translation="MDGSGGALPALPQSVLPRVPSPPPSAGELPWSRVGEIVIFTFVAL
FT                   VALYLLWLWVLRDLIFLVKARRGISTEEVSFGTSDLVVSQAPTPVGVSASCPPGPVPFT
FT                   A"
FT   gene            466..1209
FT                   /gene="V2"
FT   CDS             466..1209
FT                   /codon_start=1
FT                   /gene="V2"
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9IH24"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IH24"
FT                   /protein_id="AAF76871.2"
FT                   /translation="MPLAGSKRKRADEVAWSKRGTKKKPERTSAARAGPSRRIRPPLQI
FT                   ATFVAAGQSMVSVPSGGVCELLGSYARGADEANRHTNETVTYKVALDYHFVATAAACRY
FT                   SSVGTGVAWLVYDAQPTGNTPTTKDIFGYSDSLVAFPYTWKVSREVCHRFVVKRRCTFT
FT                   METDGRIGSDVPPANTSWPPCKRAIYFHKFFTGLGVKTEWKNLTDGGVGAIKKGALYLV
FT                   IAPGNGLEFTCHGQARLYFKSVGNQ"
FT   gene            complement(1409..1816)
FT                   /gene="C2"
FT   CDS             complement(1409..>1816)
FT                   /codon_start=1
FT                   /gene="C2"
FT                   /product="RepB"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IH23"
FT                   /protein_id="AAF76869.2"
FT                   /translation="RIQNIPGHRKQSLYILGPTRTGKSTWARSLGRHNYWQNNVDWSSY
FT                   DEEAVYNIIDDIPFKFCPCWKQLVGCQKEYVVNPKYGKKKKVASKSIPSIILANEDEDW
FT                   LTVMTPGQREYFEANAVIYIMTAGEKFYKPA"
FT   gene            complement(1726..2556)
FT                   /gene="C1"
FT   CDS             complement(1726..2556)
FT                   /codon_start=1
FT                   /gene="C1"
FT                   /product="RepA"
FT                   /db_xref="GOA:Q9IH22"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q9IH22"
FT                   /protein_id="AAF76868.1"
FT                   /translation="MTTVGSAESGSAIRSFKHRNVNTFLTYPKCHLEPEAVGLHLWSLI
FT                   GHWNPAYIVVSREAHADGSWHIHALAQSVKPVQTTNPRFFDIEDFHPNIQSAKSADRVK
FT                   EYVLKNPIKQWEKGTFIPRKKSFATTSSEDRQPKPTKDDIVRDIIEHSTSKQEYLSMIQ
FT                   KALPYEWATKLQYFEYSASRLFPETAEVYTNPHPPTEPDLINFETIEDWLNPNIYQVSP
FT                   EAYMLLTPTCLTLEEAISDLEWMQSASRTSQGTGNSLCTSLGQQEQGNQHGPEA"
XX
SQ   Sequence 2706 BP; 564 A; 646 C; 761 G; 735 T; 0 other;
     accgcgctct ctcatgcgag gcccaccagg ccgagcggtc ctgctttggt gccttatgtc        60
     ttttgttaaa gcctgtatgt aataaggcgc tttggatcgc atataagttc gtccccaggc       120
     tcagtggtgc tatggacggc tctggaggag cgttgcctgc tttgcctcaa agtgttctgc       180
     cgcgggtacc ctcgccacct ccgtctgccg gagagctgcc gtggagtcgc gtcggtgaga       240
     tagtgatttt cacctttgtt gctttggtag ctttgtacct gttatggttg tgggtgctga       300
     gagatcttat cttccttgtt aaggctcgcc gcgggatctc aacggaggag gtgagctttg       360
     gtacgtcaga tctggttgtt tcgcaggctc caacgccggt cggtgtctct gctagctgtc       420
     cgccgggacc tgtgccgttc acggcctagg tagccctcag ccaccatgcc tcttgccggc       480
     agcaaaagga agagggccga tgaggtggcc tggtctaagc gtggcactaa gaagaagcca       540
     gagcgtacat ctgccgctcg ggctggtccg tctaggcgga ttcgtccacc cttgcagata       600
     gccacgtttg tggcagccgg tcagtctatg gtgtctgtcc cttccggtgg ggtttgtgaa       660
     ctgctgggct cctatgctcg aggcgctgac gaggccaacc gtcacaccaa cgagactgtc       720
     acgtacaagg ttgccttgga ctaccacttc gttgctactg cagccgcctg caggtattcc       780
     agcgttggca ctggcgtggc ctggttggtg tatgatgcac agcctaccgg aaataccccg       840
     acgacgaagg acatcttcgg ctatagtgac tcccttgtgg cgttccccta cacatggaag       900
     gtttcaaggg aggtgtgtca tcgcttcgtg gtgaagagga gatgcacttt cacgatggag       960
     accgacggtc ggattgggtc ggatgttcct ccggcgaata cctcatggcc gccttgtaag      1020
     cgggcgattt acttccataa gttcttcact ggcctgggtg tgaagacgga gtggaagaat      1080
     ctcacagacg gtggtgtggg agcgattaag aagggtgcgt tgtacctggt cattgcccct      1140
     ggcaatggtc tagagtttac ctgccatggg caggcccgtc tgtacttcaa atcagttggg      1200
     aatcagtgat tccctacaga ataataaaac aagttttata atttcattga tattggacga      1260
     agtacaatac aggatacaat gtctgcagat gtgcagacga caacattaaa ctggttttgt      1320
     gtgtcgcgag ggggaacccg gagcacgctc ccaaaacacc caacacacac acacccaact      1380
     gaagattatt gaacatgcag ccgccggcct aagcaggctt gtagaacttc tcgcctgctg      1440
     tcataatgta tatgaccgcg tttgcctcga agtactcccg ttgtccggga gtcatcaccg      1500
     tcagccagtc ctcatcctcg ttggctagga ttattgatgg aatgctcttg gaagctacct      1560
     tcttcttctt accgtacttc gggttgacga cgtactcttt ctggcagcca accagctgct      1620
     tccagcaagg acagaatttg aagggtatat catctatgat gttgtagact gcttcctcat      1680
     cataggaaga ccagtcgaca ttattctgcc agtagttgtg gcgccctagg cttctggccc      1740
     atgttgattt ccctgttctt gttggcccaa ggatgtacag agactgtttc ctgtgccctg      1800
     ggatgttctg gatgcggatt gcatccattc taagtcagag attgcttcct caagggttaa      1860
     gcaggtagga gtaagcagca tgtaggcttc tggactaacc tgatagatgt tggggttgag      1920
     ccaatcttct atggtttcga agtttatgag gtccggttca gtgggaggat gaggattggt      1980
     gtatacttct gcagtttcag ggaacaatct ggaggctgag tactcaaagt actggagctt      2040
     cgttgcccac tcgtagggga gtgccttctg aatcatggaa aggtactctt gcttggaggt      2100
     ggagtgttcg atgatatctc tcacgatatc atcttttgtg ggtttaggtt gcctatcctc      2160
     agatgaagtg gtagcaaagg atttcttgcg tgggatgaaa gtacctttct cccattgttt      2220
     gatcgggttt ttgagcacgt attccttgac cctgtctgcg gacttggcac tctgaatgtt      2280
     aggatggaaa tcctcaatgt caaagaacct agggttcgta gtttgcacag gcttgacgct      2340
     ctgagctaag gcatggatat gccaggatcc atcagcatga gcttcccggc tcacgacgat      2400
     gtaagctgga ttccagtgac ctatgagact ccagagatgg agccctacag cttcaggttc      2460
     tagatggcac ttcggatatg tgaggaatgt gtttacgttc ctgtgcttga aggaacggat      2520
     ggcagagcct gactctgctg atcctacggt tgtcatggct gggcgagagg tctgattctg      2580
     agtctcaact aactctccta caggtttgcg aatcgaaatc cgacctcccg tcttatatag      2640
     aaggttagtt gggccgggcc gcaatttttt gtgggccgca atgagagagc gcaaaccgtt      2700
     aatatt                                                                 2706
//