ID AF235168; SV 2; linear; genomic RNA; STD; VRL; 5662 BP. XX AC AF235168; XX DT 07-APR-2000 (Rel. 63, Created) DT 22-APR-2003 (Rel. 75, Last updated, Version 3) XX DE Cereal yellow dwarf virus-RPS RPV Mex-1, complete genome. XX KW . XX OS Cereal yellow dwarf virus RPS OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5662 RA Beckett R.J., Miller W.A.; RT "Sequences of novel luteovirus and polerovirus isolates"; RL Unpublished. XX RN [2] RP 1-5662 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (16-FEB-2000) to the INSDC. RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011, RL USA XX RN [3] RC Sequence updated to remove terminal N RP 1-5662 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (21-APR-2003) to the INSDC. RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; 384b991efed39e8eaa4947a10133d788. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC5104775; 27544267. DR RFAM; RF01074; RF_site1. XX CC On Apr 21, 2003 this sequence version replaced gi:7417295. XX FH Key Location/Qualifiers FH FT source 1..5662 FT /organism="Cereal yellow dwarf virus RPS" FT /isolate="RPV Mex-1" FT /mol_type="genomic RNA" FT /db_xref="taxon:228582" FT CDS 95..835 FT /codon_start=1 FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:Q9IZF7" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:Q9IZF7" FT /protein_id="AAF62530.1" FT /translation="MFVATLSGRVIVQSSDKIYSGFVQYASFGLHSLFHAARSDYHYGP FT EETQLFCVSLAYVFPLLLTGESHGHGNGIRLPISYYPDLLRWGVALGYPPQLTRSRRKV FT HIDLCTMSSQVHYRAELQRITTTALGESLVRFPRALLYGHRQFLTILESCLRTVERNSP FT RLVWTSPVVRSLSVDKCIASNCAYCLLGRCQLLLTGRLSHIARYYNELDLQDIEVDFWY FT SAGISLHQAGEKYLQGSYLQKILQ" FT CDS join(222..1583,1583..3445) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1-P2 fusion FT protein" FT /note="low-abundance product derived from -1 ribosomal FT frameshift" FT /db_xref="GOA:Q9IZF5" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q9IZF5" FT /protein_id="AAF62532.1" FT /translation="MGPKKLSFSVFLWLMCFLSFSQGNHTGMATGSDFPSPTTLIYSGG FT VWPLVTPHSSPVAGEKCTLTCAPCPVRSITEPSYKELLQQLWVKAWLDSRALCFTAIDS FT SSRFLSHAYELSSATARALFGQVLWFAVYLWTNVLLQTARIVCSVVASYYLQVASLISL FT GITTSWIYKILRWTFGTLPASLCIRLGKSICRVLTCRKFFNEKSVAGFDSYSIPQSPPK FT KSVITLRRADKTHVGFAVCIRLFNNSNALVTSEHNLREADAFYSPRTGRAIKLAEFKVI FT FKDADLDVAIVAGPDNWESAFGCGSVHFTTHDRLAKCPAQIYVIDGEDWRAHSAKVVGH FT FDNFAQVLSNTKPGFSGAGYFHGKTLLGVHKGHAGKDYNFNLMAPLPAIPGLTSPKYEI FT ESDPPQGLIFPSEVAEEITKTIQSVYNDFLKLDKSIHSKGKEWKGGVAWADLEDEVRKV FT GKRQGGRVRRTNRSTKSQGRYKRNKESCCTFFAEGTAAPRCIPTHTHNLDDNPMFSRCY FT CNIPGHKCPFWDVSARRDAELNEFARTEDRHVEDREIDNRSGRCTSSEETSRQARLQQE FT TRAWQQYFADVYTWEISTSEQEVPGFQRVGKLSPQYYPRARSTTAWGERLCAEHPLLGE FT KTKGFGWPAVGATAELTSLRLQAARWLERSESAKIPSDAARKNVIDRTVQAYSNCKTNV FT PRCTRDQLNWDDFRIDFLEAIKSLQLDAGVGIPMITAGLPTHRGWVEDPDLLPVLARLT FT FDRLLTMSKASLETRSPEQLVKENLCDPIRLFVKQEPHKQSKLDEGRYRLIMSVSLIDQ FT LVARVLFQAQNKSEIALWSAIPSKPGFGLSTEDQVESFINVLADTAGARPEEICDKWRD FT LLVPTDCSGFDWSVSDWMLADDMEVRNRLTIDCNELTRHLRAVWLQGISNSVLCLSDGT FT MLSQVKPGVQKSGSYNTSSTNSRIRVMAAYHCGASWAIAMGDDALEAPDTDLSKYKDLG FT FKVEVSKELEFCSHIFKSPTLAIPVNANKMLYRLIHGYNPECGNAEVIVNYLNAASSVL FT HELRHDQELCALLHMWLVSGITTKDN" FT CDS 222..2174 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1" FT /db_xref="GOA:Q9IZF6" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q9IZF6" FT /protein_id="AAF62531.1" FT /translation="MGPKKLSFSVFLWLMCFLSFSQGNHTGMATGSDFPSPTTLIYSGG FT VWPLVTPHSSPVAGEKCTLTCAPCPVRSITEPSYKELLQQLWVKAWLDSRALCFTAIDS FT SSRFLSHAYELSSATARALFGQVLWFAVYLWTNVLLQTARIVCSVVASYYLQVASLISL FT GITTSWIYKILRWTFGTLPASLCIRLGKSICRVLTCRKFFNEKSVAGFDSYSIPQSPPK FT KSVITLRRADKTHVGFAVCIRLFNNSNALVTSEHNLREADAFYSPRTGRAIKLAEFKVI FT FKDADLDVAIVAGPDNWESAFGCGSVHFTTHDRLAKCPAQIYVIDGEDWRAHSAKVVGH FT FDNFAQVLSNTKPGFSGAGYFHGKTLLGVHKGHAGKDYNFNLMAPLPAIPGLTSPKYEI FT ESDPPQGLIFPSEVAEEITKTIQSVYNDFLKLDKSIHSKGKEWKGGVAWADLEDESGKS FT GNAKAAASAVPTAAPKAKAVISATKKVAAPSSQKEPPRQGASQPTPTTSTTTPCSPVAI FT ATSPDTSVPSGMSQQDVMQNLMSLLVQRIDMSKIEKSIIDQVAAQALKKPRGKRGSNKK FT RAPGNSTSPMSTPGRYLPPNKRSQGSKGLENSPPSTIPVPDQQQPGGSVSAPNTRSWVR FT KQKVSGGPPLAPPQN" FT CDS 3632..5470 FT /codon_start=1 FT /transl_except=(pos:4244..4246,aa:OTHER) FT /product="aphid transmission P5" FT /note="translated from subgenomic RNA1 as a fusion protein FT via read-through of the coat protein (P3) stop codon" FT /db_xref="GOA:Q9IZF4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR011050" FT /db_xref="UniProtKB/TrEMBL:Q9IZF4" FT /protein_id="AAF62535.1" FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAVRTQPVVVVTPNGPARRGR FT RRGPARPRRRRTPGLGGGGRGETFVFTKDSLAGNSSGSITFGPSLSDYPAFQNGVLKAY FT HEYKITGCILQFVSEASSTAAGSIAYELDPHCKISSLASTNNKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPKXVDAEPGPSPGPSPDPPP FT PSPSPEPAPAKEERFIVYSGVAHTVITAQGTDDSIIVKDIPDQRFRYVENENFYWFQIA FT AQWYSNTNTKAVPMFVFPVPIGEWSVEISTEGYQATSSMTDPNKGRIDGLIAYDNSNEG FT WNIGAGSNVTITNNKADNSWKYGHPDLEINSCHFNQNQVLEKDGLISFHIKATEKEANF FT FLVAPPVQKTSKYNYAVSYGAWTDRDMEFGLISVTLDEKRSSGSPTRKSLRAGHTQVAS FT TTDLVASPEKDNSGIQTSETPAVPVTSSKAPIPMVSDSESEDDPLSAAPDVGFGGTRLL FT LDTDIQTVPNPEVAEAFLNSAHVGYDPWAEIRAFKNAQKPVRGPSSVASGSITGGSLRG FT TLRPASEPARETPYERDENKTTRRQKSRFSFGGGRS" FT CDS 3632..4246 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:Q9IZF3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9IZF3" FT /protein_id="AAF62533.1" FT /translation="MSTVVLRSNGNGSRRRRQRVARRRPAVRTQPVVVVTPNGPARRGR FT RRGPARPRRRRTPGLGGGGRGETFVFTKDSLAGNSSGSITFGPSLSDYPAFQNGVLKAY FT HEYKITGCILQFVSEASSTAAGSIAYELDPHCKISSLASTNNKFTITKTGARSFPAKMI FT NGLEWHPSDEDQFRILYKGNGASSVAGSFKITLRVQLQNPK" FT CDS 3657..4118 FT /codon_start=1 FT /product="putative movement protein P4" FT /note="ORF4; translated via leaky scanning from subgenomic FT RNA1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9IZF2" FT /protein_id="AAF62534.1" FT /translation="MAMVRADADRESLGEGLLSERSQWLWSLPTAQPGAEDAEDQLVLG FT EEELQDSEEGAVARHLFSQRTHSRATPLEVSPSGRLYQTIRHSRMEYSRPTMSIRSQVV FT SYSSSARPLPQQPVPSLMNWTPIAKSLRSHQPTISSQSPKLVRGASQRR" XX SQ Sequence 5662 BP; 1415 A; 1543 C; 1374 G; 1330 T; 0 other; cgaaacaagc ttaggaggaa tccagtttcg cagcttctct agctcaactt gcttgtttcc 60 gctcgcaaca gccatccaca ctcgttatta gtgtatgttt gttgcgactc ttagtggaag 120 ggttatcgtt caatcgagcg ataaaatcta ctcagggttc gtgcagtacg cctctttcgg 180 cttacactcc ctcttccacg cagcgcgctc ggattaccac tatgggcccg aagaaactca 240 gcttttctgt gtttctttgg cttatgtgtt tcctctcctt ctcacagggg aatcacacgg 300 gcatggcaac gggatccgac ttcccatctc ctactaccct gatctactca ggtggggtgt 360 ggcccttggt taccccccac agctcacccg tagcaggaga aaagtgcaca ttgacttgtg 420 caccatgtcc agtcaggtcc attacagagc cgagttacaa agaattacta caacagctct 480 gggtgaaagc ctggttagat tcccgcgcgc tttgctttac ggccatcgac agttcctcac 540 gattcttgag tcatgcttac gaactgtcga gcgcaacagc ccgcgccttg tttggacaag 600 tcctgtggtt cgcagtctat ctgtggacaa atgtattgct tcaaactgcg cgtattgtct 660 gctcggtcgt tgccagctac tacttacagg tcgcctctct catatcgctc ggtattacaa 720 cgagctggat ttacaagata ttgaggtgga cttttggtac tctgccggca tctctctgca 780 tcaggctggg gaaaagtatc tgcagggttc ttacctgcag aaaattcttc aatgaaaagt 840 ctgtcgctgg tttcgacagt tactcgatcc ctcagtctcc ccctaagaaa agcgttatca 900 cactgcgacg tgctgacaaa acccacgttg gttttgccgt gtgcattcgc ttgtttaata 960 actccaacgc tcttgtgacg agtgagcaca accttaggga agcggacgcc ttctattccc 1020 cccgcaccgg gcgagccatc aagctcgctg aattcaaagt catattcaaa gatgcggatc 1080 tggacgtagc aatcgttgct ggtccagaca attgggaatc agcgttcgga tgcggaagcg 1140 tccatttcac cacacatgat cgcttggcta agtgccctgc gcagatctac gttattgacg 1200 gtgaagattg gcgcgctcac tcagcgaagg ttgtcggcca ctttgacaac ttcgcgcagg 1260 tcttgtccaa cactaaaccg ggcttctctg gagctggata cttccacggc aagactctgc 1320 ttggcgtaca caaagggcac gcaggcaaag attataactt caatctgatg gcccccttgc 1380 ctgccatccc cggactaaca tctcccaagt acgaaataga gtcagaccct ccgcagggtt 1440 tgattttccc ctctgaagtc gctgaggaaa tcacgaagac cattcagtcg gtctacaatg 1500 atttcctgaa gcttgacaaa tccattcatt ccaaaggcaa agagtggaag gggggcgttg 1560 cttgggctga tcttgaagat gagtccggaa agtcgggaaa cgccaaggcg gccgcgtccg 1620 ccgtaccaac cgcagcacca aaagccaagg ccgttataag cgcaacaaag aaagttgctg 1680 caccttcttc gcagaaggaa ccgccgcgcc aaggtgcatc ccaacccaca cccacaacct 1740 cgacgacaac cccatgttct cccgttgcta ttgcaacatc cccggacaca agtgtccctt 1800 ctgggatgtc tcagcaagac gtgatgcaga acttaatgag tttgctcgta cagaggatag 1860 acatgtcgaa gatcgagaaa tcgataatag atcaggtcgc tgcacaagct ctgaagaaac 1920 ctcgcggcaa gcgaggctcc aacaagaaac gcgcgcctgg caacagtact tcgccgatgt 1980 ctacacctgg gagatatcta cctccgaaca agaggtccca gggttccaaa gggttggaaa 2040 actctccccc cagtactatc cccgtgcccg atcaacaaca gcctgggggg agcgtctctg 2100 cgccgaacac ccgctcttgg gtgagaaaac aaaaggtttc gggtggcccg ccgttggcgc 2160 caccgcagaa ctaacctctc ttcggctgca agcggctcgc tggctcgaac gttccgagtc 2220 agccaaaatc ccatcagatg ccgcccgcaa gaacgtgatc gatcgcaccg tgcaagcgta 2280 cagcaattgc aaaactaatg taccacggtg cacacgagat cagttgaact gggatgactt 2340 tcggattgac ttcctcgaag ccatcaagtc tctccagctc gacgccggcg tgggtattcc 2400 catgatcacc gcggggctcc ctacccatcg tgggtgggtc gaagacccag atcttctgcc 2460 ggttctggct cggcttacct ttgaccgcct acttacgatg tcaaaggcaa gccttgagac 2520 gcgctctccg gagcagctcg tgaaggaaaa tctctgcgat ccaatacgcc tcttcgtgaa 2580 acaagagcca cataagcaga gtaagcttga tgagggccgc taccgcctca tcatgtcagt 2640 ttccttgatt gatcaactgg tagcccgggt tttgtttcaa gctcaaaaca aatccgagat 2700 tgcattgtgg agtgcaatcc cgtcaaaacc cggattcgga ttatccaccg aggaccaagt 2760 cgaaagtttt atcaatgtcc tcgcggatac cgctggtgcc cgtcctgaag agatctgcga 2820 caagtggcgc gatctcttgg ttccgacaga ctgttccggt tttgactggt cagtctccga 2880 ttggatgctc gcagacgata tggaggtaag aaatcgcctt accattgact gcaatgagct 2940 caccagacac cttcgtgctg tttggttgca aggcatatca aactctgttt tatgcctttc 3000 ggatggaacc atgctatccc aggttaagcc cggggtccaa aagagtgggt cgtacaacac 3060 gtcatctacg aactctagga tccgggttat ggctgcctat cattgtggcg cctcctgggc 3120 gatagcgatg ggggatgatg ccctcgaagc gccagataca gatttgagca agtataaaga 3180 tctgggcttc aaagtcgagg ttagcaagga gctggaattt tgttcgcaca tcttcaagtc 3240 tcctaccctc gccattccgg ttaatgccaa caagatgttg taccgcttga tccacgggta 3300 caatccggaa tgtggaaacg cagaggtgat tgtcaattac ctcaatgcag ccagctcagt 3360 gctgcatgag ctccgccatg atcaggagct ttgcgcgtta ttgcatatgt ggttagtatc 3420 tggcataacc acaaaagata actgagcagc acaaccagcc gagcatacgt aagttgcaag 3480 cgtcggaggt ttagtcttac acataagccc aagattgatt tcaaattcat agcgggattc 3540 gctacaggtt tcatatcctc aatccccatc tcagttcttg gtgtttatta cgtctaccta 3600 aggatctcga cgcatattcg tgaaattgtt aatgagtacg gtcgtcctta gatccaatgg 3660 caatggttcg cgcagacgca gacagagagt cgctcggcga aggcctgctg tcagaacgca 3720 gccagtggtt gtggtcactc ccaacggccc agccaggcgc ggaagacgcc gaggaccagc 3780 tcgtcctcgg cgaagaagaa ctccaggact cggaggaggg ggccgtggcg agacatttgt 3840 tttcacaaag gactcactcg cgggcaactc ctctggaagt atcaccttcg ggccgtcttt 3900 atcagactat ccggcattcc agaatggagt actcaaggcc taccatgagt ataagatcac 3960 aggttgtatc ttacagttcg tcagcgaggc ctcttccaca gcagccggtt ccatcgctta 4020 tgaattggac ccccattgca aaatctcttc gctcgcatca accaacaata agttcacaat 4080 caccaaaact ggtgcgcgga gcttcccagc gaagatgatt aacgggttag agtggcaccc 4140 ttcagacgaa gatcaattcc gtatcctcta taaagggaac ggtgcctctt ccgtagctgg 4200 ttcttttaag atcacacttc gtgtacagct acaaaacccg aaataggtag acgcggaacc 4260 cggccctagt ccagggccat cacccgaccc ccccccccct tccccatccc cagaaccagc 4320 tcctgccaag gaggaacgct tcatcgttta ctctggggtg gctcacacgg tcatcactgc 4380 tcaaggcact gatgattcta tcatagttaa agatatcccc gaccagcgat ttagatacgt 4440 tgagaacgaa aacttctact ggtttcagat agctgctcaa tggtactcaa atacaaatac 4500 taaagcagtt ccgatgtttg tctttccagt tcccattgga gaatggtcag tcgaaatatc 4560 aactgaggga tatcaagcca catccagcat gactgaccct aacaagggcc gcatcgatgg 4620 gctcatagct tatgataact caaatgaagg gtggaatatt ggggctggaa gtaatgtcac 4680 catcacaaac aataaagctg acaatagttg gaagtacggt catcccgacc tggaaatcaa 4740 ctcttgtcac tttaaccaaa accaagtttt ggagaaagat ggtcttattt cctttcacat 4800 caaagccaca gagaaagaag cgaacttctt tctggtggct ccgcctgtcc agaaaacttc 4860 aaagtacaat tacgccgtct catatggcgc ctggacagac agagatatgg aattcgggtt 4920 gatttcggtt acgcttgatg agaagcgtag ctcgggttcc cccactcgta aaagcttgcg 4980 tgccggacac acgcaagtgg cgtccactac cgacttggtg gcgtcaccgg agaaggacaa 5040 ctccggtata caaacatctg aaaccccggc agttccggtc accagctcaa aagcaccgat 5100 tccaatggtt tcggattcgg agtcagaaga cgacccgctg tcagccgcac ccgatgtggg 5160 attcggcgga actcgtcttt tactggatac tgatatccag accgtaccca atccggaagt 5220 tgcagaggcc ttcttgaaca gcgctcatgt gggttacgac ccttgggccg agatccgagc 5280 gttcaagaac gctcagaaac ctgttcgagg gccatcatcg gtcgctagcg gctccattac 5340 tggaggatcg cttcgaggga cacttcgccc ggcttccgag cctgcgcgag aaaccccata 5400 cgagagagac gaaaacaaaa cgactcgtcg tcagaaatca cgtttctcgt ttggtggtgg 5460 tcgctcctaa agtctcaccg agcagagact ataaacttgc tcaaacgggc gaaggaaaat 5520 gccttaaatc acccgtcgca agacgttaaa ggaggattaa gaccctcccc ccttcctggc 5580 tcaacaacct tgttccaggt taggttcttg tctttaaaag aagaagctat cttagagatc 5640 ccgatctcta ggaagctttg gt 5662 //