ID AF235167; SV 1; linear; genomic RNA; STD; VRL; 5665 BP. XX AC AF235167; XX DT 07-APR-2000 (Rel. 63, Created) DT 04-APR-2002 (Rel. 71, Last updated, Version 3) XX DE Barley yellow dwarf virus PAV-Ill genomic RNA, complete genome. XX KW . XX OS Barley yellow dwarf virus PAV-Ill OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5665 RA Beckett R.J., Miller W.A.; RT "Sequences of novel luteovirus and polerovirus isolates"; RL Unpublished. XX RN [2] RP 1-5665 RA Beckett R.J., Miller W.A.; RT ; RL Submitted (16-FEB-2000) to the INSDC. RL Plant Pathology, Iowa State University, 474 Bessey Hall, Ames, IA 50011, RL USA XX DR MD5; d654263d22d9c1d405ae8ee931aad885. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF00434; BTE. DR RFAM; RF01508; BYDV_5_UTR. XX FH Key Location/Qualifiers FH FT source 1..5665 FT /organism="Barley yellow dwarf virus PAV-Ill" FT /isolate="PAV-Ill" FT /mol_type="genomic RNA" FT /db_xref="taxon:191031" FT CDS 142..1161 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1" FT /note="ORF1" FT /db_xref="GOA:Q9IZG3" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q9IZG3" FT /protein_id="AAF62524.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGF" FT CDS join(142..1155,1155..2744) FT /codon_start=1 FT /product="RNA-dependent RNA polymerase P1-P2 fusion FT protein" FT /note="low-abundance product derived from -1 ribosomal FT frameshift" FT /db_xref="GOA:Q9IZG2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:Q9IZG2" FT /protein_id="AAF62525.1" FT /translation="MFFEILIGASAKAVKDFISHCYSRLKSIYYSFKRWLMEISGQFKA FT HDAFVNMCFGHMADIEDFEAELAEEFAEREDEVEEARSLLKLLVAQKSKTGVTEAWTDF FT FTKSRGGVYAPLSCEPTRQELEVKSEKLEKLLEEQHQFEVRAAKKYIKEKGRGFINCWN FT DLRSRLRLVKDVKDEAKDNAKAAAKIGAEMFAPVDVQDLYSFTEVKKVETGLMKEVVKE FT RNGEEEKHLEPIMEEVRSIKDTAEARDAASTWITETIKLKNSTLNADELSLATIARYVE FT NVGDKFKLDIASKTYLKQVASMSVPIPTNKDIKLKMVLQSPEARARRERMDVLDSVGFL FT EGLCTASGFESPFSILGLPEIAVTDGARFRKVSSNIRYLSQTHLGLVYKAPNASLHNAL FT VAVERRVFTVGKGDKAIYPPRPEHDIFTDTMDYFQKSIIEEVGYCRTYPAQLLANSYSA FT GKRAMYHKAIASLKTVPYHQKDANVQAFLKKEKHWMTKDIAPRLICPRSKRYNIILGTR FT LKFNEKKIMHAIDSVFGSPTVLSGYDNFKQGRIIAKKWQKFACPVAIGVDASRFDQHVS FT EQALKWEHGIYNGIFGDSELALALEHQITNNIKMFVEDKMLRFKVRGHRMSGDINTSMG FT NKLIMCGMMHAYFKKLGVEAELCNNGDDCVIITDRANEKLFDGMYDHFLQYGFNMVTEK FT PVYELEQLEFCQSKPVSINGKYRMVRRPDSIGKDSTTLLSMLNQSDVKSYMSAVAQCGL FT VLNAGVPILESFYKCLYRSSGYKKVSEEFIKNVISYGTDERLQGRRTYNETPITNQSRM FT SYWESFGVDPKIQQIVERYYDGLTVSAQLQSVKVTTPHLQSILLSIPENHSHNEY" FT CDS 2858..3460 FT /codon_start=1 FT /product="coat protein P3" FT /note="ORF3; translated from subgenomic RNA1; occasional FT read-through of stop codon produces P3-P5 fusion protein" FT /db_xref="GOA:Q9IZG1" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9IZG1" FT /protein_id="AAF62526.1" FT /translation="MNSVGRRGPRRANQNGTRRKRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAK" FT CDS 2858..4810 FT /codon_start=1 FT /transl_except=(pos:3458..3460,aa:OTHER) FT /product="aphid transmission protein P5" FT /note="translated from subgenomic RNA1 as a fusion protein FT via read-though of the coat protein (P3) stop codon" FT /db_xref="GOA:Q9IZG0" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9IZG0" FT /protein_id="AAF62528.1" FT /translation="MNSVGRRGPRRANQNGTRRKRRRTVRPVVVVQPNRAGPRRRNGRR FT KGRGGANPVFRPTGGTEVFVFSVDNLKANSSGAIKFGPSLSQCPALSDGILKSYHRYKI FT TSIRVEFKSHASATTAGAIFVELDTACKQSALASYINSFTISRTASKVFRAEAINGKEF FT QESTIDQFWMLYKANGTTTDTAGQFIITMSVSLMTAKXVDSSTPEPKPAPEPTPTPQPE FT PAPQPAPEPTPAPVPKRFFEYIGTPTGTISTRENSDSISVSKLGGQSMQYIENEKCETK FT VIDSFWSTNNNVSAQAAFVYPVPEGSYSVNISCEGFQSVDHIGGNEDGYWIGLIAYSNS FT TGDNWGVGNYKGCSFKNFLATNTWRPGHKDLKLNDCQFTDGQIVERDAVMSFHVEATGT FT DACFYLMAPKTMKTDKYNYVVSYGGYTNKRMEFGTISVTCDESDVEAERITRHAETPIR FT SKHILVSEQYEQPLPTIIDQGLCDVQTPEQEQTLVDEEDKQTVSTEPDIALMEYEAATA FT EIPDAEEDVLPSKEQLSSKPVDTSGYKIPKPKEPEVLGTYQGQNIYPEDVPPIARQKLR FT EAANAPSTLLYERAPKKSHNFLTRFVEANRSPTTPAAPTVSTVSNMTREQLAEYTRIRK FT SLGLTAAKEYKAQFQ" FT CDS 2901..3362 FT /codon_start=1 FT /product="putative movement protein P4" FT /note="ORF4; translated via leaky scanning from subgenomic FT RNA1" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9IZF9" FT /protein_id="AAF62527.1" FT /translation="MAQEGNAVEQFGQWLWSNPIEQDPDDEMVDAREEEGQILYLDQQA FT GLRYSCSQSITLKPTLPGQSNSAPVYRNAQRFQTEYLSPTTVTRSQVSVLSLSHTRPQL FT RPALSLLNSTPRANNQPWLATLIPSQSAGPPQRSSEPKRLTARNSRNQR" FT CDS 4917..5042 FT /codon_start=1 FT /product="P6 protein" FT /note="ORF6; translated from subgenomic RNA2" FT /db_xref="GOA:Q9IZF8" FT /db_xref="InterPro:IPR009426" FT /db_xref="UniProtKB/TrEMBL:Q9IZF8" FT /protein_id="AAF62529.1" FT /translation="MDDLHVIAVCIFALTVLTGLGAVIGCCAGCLLPPPSFRSSV" XX SQ Sequence 5665 BP; 1676 A; 1371 C; 1380 G; 1236 T; 2 other; nntgaagatt gaccatctca caaaagctgt tacgcgcttg taacacacta cacactcgtt 60 ttgtattcga gaagtagttg caacaacggt ccccttattg cctgacaagc tgagggccac 120 ccttctatcc ccaccgccac catgttcttc gaaatactta taggagctag cgctaaagcg 180 gtaaaagact tcatcagcca ttgttactct cgtttgaaat caatatatta ttcttttaaa 240 cgatggctga tggagatatc tgggcagttt aaggcccatg acgcctttgt caacatgtgc 300 ttcgggcaca tggctgacat tgaggacttc gaggcagaac tcgctgagga gtttgccgag 360 agggaggatg aggtagaaga ggcaagaagc ctcttgaaac tgctggtcgc ccaaaaatct 420 aaaaccgggg tgaccgaggc ttggaccgac ttctttacga agtcgagagg cggcgtctat 480 gcgccacttt cctgcgagcc taccaggcag gagctagaag tcaagagcga gaagctcgaa 540 aaacttctag aagaacagca ccaattcgag gtgcgagcgg ccaagaaata catcaaggaa 600 aagggccgcg gcttcatcaa ctgctggaac gacttgcgaa gtcgtctcag gctggtgaag 660 gacgtcaagg acgaggcgaa ggacaacgcc aaagctgccg ccaagatcgg agcagaaatg 720 ttcgcccccg ttgacgtcca ggacctctac agttttacag aggtcaagaa ggtggagacc 780 ggcctcatga aggaggtcgt gaaagagaga aacggcgaag aagagaaaca cctcgagccc 840 atcatggaag aggtgagatc tatcaaggat accgccgaag ccagggacgc cgcctccacc 900 tggataacag agacaattaa gctgaagaac tcaacgctta acgcagatga gctgtctctg 960 gccaccatcg cccgctacgt tgaaaacgta ggggacaaat tcaaactcga cattgctagc 1020 aagacatatc taaagcaagt cgcatcgatg tctgtaccca tcccaactaa taaggacatc 1080 aaattgaaga tggtgctgca gagtcctgaa gcacgtgcca ggcgggaacg catggacgtg 1140 cttgactctg tgggttttta gaggggctct gtaccgcctc tggttttgag agcccattct 1200 ccattctcgg gctgccagag attgcggtca cagacggagc ccggttccgt aaggttagta 1260 gtaatattag ataccttagc caaacccacc taggtcttgt atataaggca ccaaatgcct 1320 ccctgcacaa tgcgcttgta gcagtggaga gaagagtttt tacagtagga aagggggaca 1380 aagcaatcta ccccccccgc ccggagcatg acattttcac tgatacgatg gattacttcc 1440 agaaatccat tatagaagag gtgggatact gtagaacata tccagcgcaa ctcctggcta 1500 acagctatag cgcaggaaag agggccatgt atcacaaagc tattgcatca ttgaagactg 1560 tcccttatca tcagaaggat gccaatgtgc aagctttcct gaagaaggaa aaacattgga 1620 tgaccaagga catcgccccc cgattgattt gcccccgcag caagcggtac aacatcatcc 1680 taggaactcg tttaaaattc aacgagaaga agatcatgca cgctattgat agtgtgttcg 1740 gatcccccac tgtgctttct ggttatgaca actttaaaca aggaagaatc atagccaaga 1800 agtggcaaaa gtttgcatgc cccgtcgcca tcggcgtgga tgctagccgc tttgaccaac 1860 acgtgtcaga gcaggcgctt aagtgggaac acgggatata caatgggatc ttcggagaca 1920 gcgaactggc tcttgcactc gaacaccaaa tcaccaacaa catcaagatg tttgttgaag 1980 acaaaatgct taggttcaag gtaagaggcc acagaatgtc cggtgacatt aataccagca 2040 tgggaaataa gcttataatg tgcggcatga tgcatgcata tttcaagaag ctgggtgttg 2100 aagctgaact ttgcaacaac ggagacgact gtgtcatcat cactgataga gccaatgaaa 2160 agctctttga tggcatgtac gaccacttcc tccagtatgg cttcaacatg gtgaccgaaa 2220 aaccagttta cgaactggag caattggagt tttgccagtc aaaaccggtc tctattaatg 2280 gaaagtatag aatggtcaga aggcccgata gcataggcaa agatagcaca acactactga 2340 gcatgctcaa tcaatccgac gtcaagagct acatgtcggc tgttgctcag tgtggtctgg 2400 tgctcaacgc tggagtaccc atacttgaaa gtttctataa atgcctatat agaagctcgg 2460 ggtacaagaa agtgagtgag gaatttatta aaaacgtcat atcgtatgga acagatgaga 2520 gactacaagg tagacgtacc tataatgaaa cacctatcac aaaccaaagt agaatgtcct 2580 actgggaatc attcggagtt gaccctaaga tacagcaaat cgtcgagagg tactacgacg 2640 gtcttacggt aagtgcccaa ctccagagcg tgaaggtgac gactccacat ctgcaatcaa 2700 tactactttc cataccggaa aaccactcac ataacgaata ttaattatca aatcttagct 2760 gggtttggga tagggttcat agttagtata ccctgtacat tagctctcgc gtactttatt 2820 tacaataaag tttcagacac cactagagag gtggtgaatg aattcagtag gccgtagagg 2880 acctagacgc gcaaatcaaa atggcacaag aaggaaacgc cgtagaacag ttcggccagt 2940 ggttgtggtc caacccaatc gagcaggacc cagacgacga aatggtcgac gcaagggaag 3000 aggaggggca aatcctgtat ttagaccaac aggcgggact gaggtattcg tgttctcagt 3060 cgataacctt aaagccaact cttccggggc aatcaaattc ggccccagtc tatcgcaatg 3120 cccagcgctt tcagacggaa tacttaagtc ctaccaccgt tacaagatca caagtatccg 3180 tgttgagttt aagtcacacg cgtccgcaac tacggccggc gctatctttg ttgaactcga 3240 caccgcgtgc aaacaatcag ccctggctag ctacattaat tccttcacaa tcagcaggac 3300 cgcctcaaag gtcttcagag ccgaagcgat taacggcaag gaattccagg aatcaacgat 3360 agaccagttt tggatgctct acaaggccaa tggaactacc actgacacgg caggacaatt 3420 cattatcacg atgagtgtca gtttgatgac ggccaaatag gtagactcct caacaccgga 3480 accgaaacct gcaccagaac caacaccaac cccacagcca gagccagccc cacagcccgc 3540 acccgaaccg actcctgcac ctgtccccaa aagattcttt gagtatatcg gcactccaac 3600 cggtacaatc tcaacaagag agaactctga cagtatttct gttagcaagc tcggtgggca 3660 gtcaatgcag tacattgaga atgagaaatg tgaaacaaag gtcattgact ccttctggag 3720 cactaacaac aacgtgtctg cacaggcagc cttcgtttac ccagtgccag aaggatcata 3780 cagtgtgaac atttcgtgcg aaggctttca atccgttgac cacataggag gcaacgagga 3840 tggctattgg attggtttaa ttgcctactc caattcgaca ggagacaatt ggggggtagg 3900 caactacaaa ggatgcagtt tcaagaactt cttggcaact aatacttgga gaccaggcca 3960 taaggatctc aagttgaacg attgccagtt cacagatgga caaatagttg aaagggatgc 4020 cgtgatgtct ttccatgtgg aagcaacagg tactgacgcc tgtttttatc tcatggctcc 4080 caaaacaatg aaaactgaca aatacaacta tgttgtctca tatggagggt acacaaacaa 4140 gcgaatggaa tttggtacca tatctgtgac atgtgatgaa tccgatgttg aggcagaacg 4200 cataacaagg cacgctgaaa cacccatacg ttccaaacac attcttgtgt ccgaacagta 4260 tgagcaacct ctacccacca taatcgatca aggcttgtgt gacgtgcaaa ctcccgagca 4320 agaacaaaca ctggtggatg aagaagacaa acagactgtt tccacagaac ctgatatagc 4380 actcatggaa tatgaagctg caacagccga aattccggat gctgaagagg atgtcttgcc 4440 ctccaaggaa cagctgtctt ctaaaccggt ggacacgtcc ggctacaaga tacctaagcc 4500 caaggaacct gaagtacttg gaacatacca gggacagaat atttaccctg aagacgtgcc 4560 accaattgcg cggcaaaaac tacgtgaagc cgcaaatgca ccctccacat tgctctacga 4620 gagggctccc aagaagagcc ataatttctt gactcgtttt gtggaggcga ataggtcccc 4680 taccactcca gctgccccaa cagtgtcaac tgtatcaaac atgacaaggg aacagcttgc 4740 ggagtacact agaattagga aatcccttgg actcacagca gcgaaggaat acaaggcgca 4800 atttcagtga aggtaacacc actagcacaa atcggatcct gggaaacagg cagaactacg 4860 gttcataagc tcgggtaggc cgtcaaccta ccgccgtatc gtattgtgtt tggccgatgg 4920 atgaccttca cgtaatcgcc gtttgtattt ttgctctaac tgtgttgaca gggttaggcg 4980 cggtgatcgg ctgctgtgcc ggttgccttc tcccccctcc ttccttccgc tcttctgttt 5040 aagcaaaaat ctctcggtct gtgcgggaga aactcaaaaa tatcggggag cttcggctca 5100 gtgaggggat taacgacccc cagtaaaggc tggtcttggc ggacttgaat aacccgctat 5160 aagacgaagt ggtaaccgcc actgatcaaa tggtgaacat gcttctgtgt tgtacactgc 5220 cccggagcct accgggtaaa caaggctatt ccaccagctc gatgaaatga gagtggagtg 5280 gacggagtgg gtgacttcga gatgtacacc cgatcgtcag gattgaagac gttaaaactc 5340 gacgacctag tgcaagtcgt taaactgact agggtggata caccacaccc ggcctaactt 5400 gtgggcatac ccacgatacg aaacgtgggt ctcttggagc cactacctgt gatgcaaggt 5460 agggtatgag tcttagcaag ctctgtgcca ggagatggac ataaaccata gcaatcctgc 5520 aagtcatctt ggcgaaccat aggtgaaccg tgccatgggc ctgcctaccg aaaggaaaag 5580 cagtatccaa cacagcaatg tgttgggggt tacacccttc ggggtactct taacgctgac 5640 actcgaaaga gcagttcggc aaccc 5665 //