Dbfetch
ID AF226851; SV 1; linear; genomic RNA; STD; PHG; 7051 BP. XX AC AF226851; XX DT 11-APR-2000 (Rel. 63, Created) DT 15-AUG-2008 (Rel. 96, Last updated, Version 5) XX DE Pseudomonas phage phi8 segment L, complete sequence. XX KW . XX OS Pseudomonas phage phi8 OC Viruses; Riboviria; Cystoviridae; Cystovirus. XX RN [1] RP 1-7051 RX DOI; 10.1006/viro.2000.0374. RX PUBMED; 10873764. RA Hoogstraten D., Qiao X., Sun Y., Hu A., Onodera S., Mindich L.; RT "Characterization of phi8, a bacteriophage containing three double-stranded RT RNA genomic segments and distantly related to Phi6"; RL Virology 272(1):218-224(2000). XX RN [2] RP 1-7051 RA Qiao X., Sun Y., Qiao J., Mindich L.; RT "Temporal control of message stability in the life cycle of dsRNA RT bacteriophage F8"; RL Unpublished. XX RN [3] RP 1-7051 RA Hoogstraten D., Qiao X., Sun Y., Hu A., Onodera S., Mindich L.; RT ; RL Submitted (20-JAN-2000) to the INSDC. RL Microbiology, Public Health Research Institute, 455 First Avenue, New York, RL NY 10016, USA XX RN [4] RC Amino acid sequence updated by submitter RP 1-7051 RA Hoogstraten D., Qiao X., Sun Y., Hu A., Onodera S., Mindich L.; RT ; RL Submitted (14-AUG-2008) to the INSDC. RL Microbiology, Public Health Research Institute, 455 First Avenue, New York, RL NY 10016, USA XX DR MD5; 120d1c34964df9cc071bcedc726fb563. DR EuropePMC; PMC152793; 12654997. DR EuropePMC; PMC2612379; 18971268. XX FH Key Location/Qualifiers FH FT source 1..7051 FT /organism="Pseudomonas phage phi8" FT /segment="L" FT /mol_type="genomic RNA" FT /db_xref="taxon:120086" FT gene 253..510 FT /gene="14" FT CDS 253..510 FT /codon_start=1 FT /transl_table=11 FT /gene="14" FT /product="P14" FT /note="unknown" FT /db_xref="UniProtKB/TrEMBL:Q9MC17" FT /protein_id="AAF63298.1" FT /translation="MSSPSVAYSTTLDMIRHDLGEKVWSDAFDALHFSITGHYPGDPQT FT APIAASHLLRTSISEVIANGHQTHHIPSFTARDQQGASEL" FT gene 514..744 FT /gene="Ha" FT CDS 514..744 FT /codon_start=1 FT /transl_table=11 FT /gene="Ha" FT /product="PHa" FT /db_xref="UniProtKB/TrEMBL:B4DCT9" FT /protein_id="ACG69468.1" FT /translation="MSQNHPWVHMIEHFANIRGKKERATAPRTARTSLESLDAAIAQSS FT VTEVAEGLGVSTRSLNATMRSARTHLAEMNQ" FT gene 741..1211 FT /gene="Hb" FT CDS 741..1211 FT /codon_start=1 FT /transl_table=11 FT /gene="Hb" FT /product="PHb" FT /note="accessory protein" FT /db_xref="UniProtKB/TrEMBL:Q9MC16" FT /protein_id="AAF63299.2" FT /translation="MSSHAAKARKGLFSALAKDRVTKSISNPTVKAHAHGVAALLMFVA FT GRLESRYGAPFAINFHAGLFHAGTSSSARLGSLITTMVGVGAVRNAASHWLGGMDYHEL FT AQAALPLYEEARHTTILARVPDIEDVDDELALLMHEIGIRFTDGAITIIEPY" FT gene 1211..3121 FT /gene="2" FT CDS 1211..3121 FT /codon_start=1 FT /transl_table=11 FT /gene="2" FT /product="P2" FT /note="RNA polymerase" FT /db_xref="GOA:Q9MC15" FT /db_xref="InterPro:IPR007096" FT /db_xref="InterPro:IPR016406" FT /db_xref="UniProtKB/TrEMBL:Q9MC15" FT /protein_id="AAF63300.1" FT /translation="MASFVPLVGDPKLEGSYFSWVNNQPSAMDDYSLVKTVAAIRTAFG FT PSINRAPSFKDVTQLVVVTRTGVKHYKANDPQYLRFQKELADALQQFEPSKQLTLGVTG FT LGLTRDFGTMYTHGAVFMNPTLSPRVDRLGETGGELPSDYMLALSIMSEIYFEEFKPAK FT VRTNGKSKTGLPNNTKDAREKKKFFMSLMDHGTGWSSALAKGDYSYSAKYYGSAPITLP FT TYRDQLEKPGKKRDGYDFLGNAVVAADKSIPSKYSQGVDGLHALRRRTAYAVSYAAATP FT MQCFVAGCRHIALERYGETWHEHDAEDIIRRIYKYGFYELYDASAFDTGFSWKEITTMI FT DAIPGITDLARDYMRSVHRLPLLITSDVRGVKGAYLLNMDKYSPGLQSGVPSVSDFGKI FT RGAAQWSYGLMVLGAIRYQSRAQLKTEFKTLLKHGRPDFAMQNRGDDTMPLAARQKDLQ FT KWCEIVEGFKFCKWEKDTGKKFIGRVLYQRTPESKVVAYSDIVTMLEKTFINERSMFSA FT HRPFAATGNVMRYEMNMAHPAFGAVMDVVDTIMLKHFGVTYKECFVGAQALEKELNNGV FT ELPDYAGLNQATRDFILDPDVIHYKWRESDIDPRVLDMVMPTSLEPDLCEEAVHKFGFV FT K" FT gene 3121..4086 FT /gene="4" FT CDS 3121..4086 FT /codon_start=1 FT /transl_table=11 FT /gene="4" FT /product="P4" FT /note="NTPase" FT /db_xref="GOA:Q9MC14" FT /db_xref="InterPro:IPR020973" FT /db_xref="InterPro:IPR027417" FT /db_xref="PDB:4BLQ" FT /db_xref="PDB:4BWY" FT /db_xref="UniProtKB/TrEMBL:Q9MC14" FT /protein_id="AAF63301.1" FT /translation="MARKTKVTPDDNSIIDLGPRVQSLMEQLATTKLEEGVKNLDMGSV FT YEITTVMVLGNSILGFHKGDLVKMVRPSVSARDLIGVGYATASAAVVRQRLIEHKIEAG FT AELIISGTAGGKTVLTNHYAAQMCAKGLKVAVVSMAEAERPLYGSVLHVFAALHLAAVS FT DVDVLYVDSLRSVYNELGGNLKKGGVSRQVDGMLTALDQYARAVNMRVVFTLNPSDDEN FT VDAAVRSVFKTASASMHTARRIKSFAVNGTAFTAETEIHLRADRSNSANRVSGDLVSRG FT VSNANAIGAVFNQFLLSGQDGSAFLGPNIPESNYIEGVDK" FT gene 4083..6461 FT /gene="1" FT CDS 4083..6461 FT /codon_start=1 FT /transl_table=11 FT /gene="1" FT /product="P1" FT /note="major structural protein of viral core" FT /db_xref="GOA:Q9MC13" FT /db_xref="PDB:4BTP" FT /db_xref="PDB:4BX4" FT /db_xref="UniProtKB/TrEMBL:Q9MC13" FT /protein_id="AAF63302.1" FT /translation="MSKLDLGRVDLLSMLGNSSSAGVDTAKGVIPFSTSGATWAVPRLS FT EDGITSHFLRRRGYVTMTQGGSRDQNAAVRKILSLIIAYDIQTQACFFISNEESMRITM FT AETMGVKDRPNARTNSWAEVSDSDINRGIAKALKEGNLTLDENQKDGFMKLVHAFVADI FT LAQSGHYKPVTSVTYFSAPIDMESDYLDPFSIAIIRDVLDDSPFSELRYDARAMSELED FT RDVPITRFSRVMAQMGNAMVRNIMVLNEAAQRKLRGLAVVGEIVHGRVRAPVRYLNDSF FT IQTLRSNINFHLLTRTTPERWAQSWIQAFGSLKGWVDAINGIADATTEEEKKKLAMQTS FT MDLELLSDLTPLIRDAATSVEKFVTFAPLSFYQGLGSVTQIRALDSSTNLAAVIVRYAA FT KEINLIPAYQSFQVPTVDVGVKKTAIMDQRLSLQLPEFSEDQFFGMLEQRMQNMSDSEV FT AELVDRIAKGETPFGDVVKQLPGTSTLLVTNGYYMGGLLTNEDKIIPGDASVPALLYMQ FT AASFASSVRFPPGEYPVFHHESSNGDVRLTDQVSADAQLSHSAVETANPLNFLVACNVS FT VHTPSIAIDIIEPMPDLTRRGTTEYVHKGEIKVAAIPSLPPKSADRKAQVSRETAKFER FT VLYKARKGGAQVAAPIDLESLFGIAVNLAVPTVKHVYSPDSKTKLALDIIKGLESEGDK FT AAATRLLMTLARAYTGTYSSLGLRRRDEITGIAAQPSDVAMQEFALQSGVQTLKAVAKH FT TGIMEVATIEMVEEKVRSLDDNRFYEIAAEVVLRALKGM" FT gene 6463..6990 FT /gene="7" FT CDS 6463..6990 FT /codon_start=1 FT /transl_table=11 FT /gene="7" FT /product="P7" FT /note="core protein" FT /db_xref="UniProtKB/TrEMBL:Q8LTT1" FT /protein_id="AAM73501.1" FT /translation="MTDPITAVAINRLVDTIDRAAWASMEDEEKLGYIRRYVSDADDLG FT ISPRMVDDVLDGISSKPVVQDDVFGEAETASSLASRLATTLTRATALRTVMVDGYRVVV FT GRVGELTLSARVVQEDHRQVVVGYIRVAHDVGGDEYTRMCANIARNEVDYDRITIGGDE FT SSLEDDEQADEA" XX SQ Sequence 7051 BP; 1633 A; 1912 C; 1897 G; 1609 T; 0 other; gaaatttatt taaagctttc tcgttgaaat cctgggagcc ttacagagga cgcacatctc 60 gaaactcaat tgagtctaga acatgacgga cagtaaggat ggttgagagc gaagaattcg 120 attcatagcg catatgcgtg agacccgttt ccacttcact caaaagctga tcacataaca 180 agtgattaga taagtttcat ttcgcgttca tcgcgatcat caattaatag ttaataatag 240 gagttatgac tcatgtcctc accatctgta gcgtactcaa ctacgctcga tatgatccgg 300 cacgacctag gcgaaaaagt ctggtccgat gcatttgatg ctttacactt cagcatcacc 360 ggacactacc cgggtgaccc acagaccgca ccgatagcgg caagtcacct gttaaggacg 420 agcatatctg aggtcatcgc caacggccat cagacacatc acattccctc attcacggca 480 cgtgaccagc agggagcatc ggagttatga agtatgtcac agaatcatcc ttgggtacac 540 atgatcgagc atttcgcgaa cattcgcgga aagaaggaac gcgcaaccgc accacgcacg 600 gcgcgcacaa gtctcgagag cctggacgcc gcaatcgctc agtcgtcggt cacggaagtg 660 gcggaaggat tgggtgtgag cactcgttct ctgaacgcaa ccatgcgttc ggcccgtacg 720 cacctcgcgg agatgaatca atgagcagtc acgcagccaa agcgcgcaaa gggctcttct 780 ccgcgcttgc gaaagaccga gtgaccaagt ccatctccaa tcctacggtg aaggcgcacg 840 cgcatggtgt cgctgcactt ctgatgttcg tggcaggtcg actggaaagc cgttacggcg 900 ctccattcgc catcaacttc cacgccggcc tgttccacgc tggtacgagt tcgtcggccc 960 gactcggtag cctgatcact actatggttg gtgtcggcgc cgtccgcaac gcggccagtc 1020 actggctggg tggcatggat taccacgaac tggctcaggc ggcgctccct ctctacgaag 1080 aggcgcgtca caccactatt ctcgcccgcg ttcctgacat cgaagacgtg gacgatgaac 1140 tggctctgct gatgcacgag atcggtatcc gtttcaccga cggggcgatc accatcatcg 1200 agccgtactg atggcatcgt tcgttcccct tgtaggggac cccaagcttg agggtagtta 1260 cttctcttgg gtcaacaatc agcccagtgc tatggacgac tactcgttgg tcaagaccgt 1320 tgcggccatc cgcaccgcgt tcggaccgag catcaatcgc gccccgtcct tcaaggatgt 1380 aacgcagttg gtagttgtca ctcgcaccgg agttaaacac tacaaagcga acgacccgca 1440 atatctgcgc ttccagaaag agctggcaga cgcgttgcag caattcgagc cgtccaagca 1500 attgacgctc ggagttacag ggttgggttt gacacgtgat ttcggcacta tgtatacaca 1560 tggagccgta tttatgaacc ccactctatc tcctcgagtc gatagactcg gtgagacagg 1620 aggagagctt ccttctgatt acatgctggc gctgtccatc atgtctgaaa tttacttcga 1680 agagttcaaa cccgcaaagg taaggacgaa cggtaagtcg aagactggtc tcccgaataa 1740 taccaaagat gcacgggaga agaagaaatt cttcatgtct ctcatggatc acggtacggg 1800 atggtcgagt gccttggcaa aaggggatta ctcgtactct gccaagtact acggttcggc 1860 tccaatcacg ctgcctacct atcgggacca actcgagaag cccggcaaga agcgtgatgg 1920 ctacgacttt ctcggcaacg cagtggtagc ggcagacaag agcatacctt ccaagtattc 1980 tcaaggtgtc gacgggctac acgctcttcg acgtcgtacg gcttacgccg tgtcttacgc 2040 tgcggctact cctatgcagt gcttcgtcgc tggatgtcgt cacatagctc tagagcgata 2100 tggcgagacc tggcacgagc atgatgctga ggatatcata cgacgcatct ataaatatgg 2160 tttctacgaa ctgtatgacg cgtcagcgtt cgacaccggg ttctcatgga aagagatcac 2220 caccatgatc gatgccatac caggcatcac cgacctggcc agagattata tgcgctctgt 2280 ccataggctg cctttgctaa tcacctcaga cgtgagaggc gttaaagggg cctatctcct 2340 taacatggat aagtactcac cgggattgca atctggtgtg ccaagtgttt cggatttcgg 2400 taagatcagg ggtgctgccc aatggtcgta cggcctgatg gtactgggcg ctatacggta 2460 tcaatcacgc gcacagctga agactgaatt caagacactc ctgaaacacg ggcgtcctga 2520 tttcgccatg cagaacaggg gcgacgacac aatgcctctt gccgctagac agaaggacct 2580 ccagaaatgg tgtgagatcg tcgaaggctt caaattctgt aagtgggaga aagataccgg 2640 taagaaattt atcggtcgcg tgttgtacca acgcactcca gagtcgaaag ttgttgcata 2700 cagtgacatc gttacgatgc tagagaagac tttcatcaac gaacgctcta tgttcagcgc 2760 gcacagaccg tttgccgcaa ctggcaacgt aatgcgttat gaaatgaaca tggcacaccc 2820 agcttttggt gctgtgatgg acgttgttga cactattatg ctgaaacact tcggtgtcac 2880 gtataaagag tgcttcgtag gcgcgcaggc gcttgagaag gagttgaaca atggcgtcga 2940 actaccagac tacgccggcc tcaatcaggc cactcgtgat ttcatcctcg atcctgacgt 3000 catccactac aagtggaggg agtcggacat cgacccgcga gtgcttgaca tggtcatgcc 3060 aacctcactt gagccagatc tctgcgaaga ggctgttcat aaatttggat tcgtcaaata 3120 atggctagaa aaacgaaagt tacaccagac gacaactcca tcatcgactt gggccctcgc 3180 gttcaatctc tgatggagca actcgcaact accaagctcg aagagggcgt caaaaacctt 3240 gacatgggat cggtttacga gatcactact gtcatggtgc tcggtaactc catcctcggc 3300 tttcacaaag gcgacctcgt taagatggtc cgcccaagtg tctcggctcg tgacctcatc 3360 ggtgttggtt atgccactgc ttccgctgcc gtggtgcgcc aacgattgat tgagcacaag 3420 atcgaagctg gcgccgaatt gatcatcagc ggcaccgcag gcggtaagac tgtgctcacc 3480 aatcactacg cagcccagat gtgtgcgaaa ggtctgaagg tggccgtggt atccatggct 3540 gaggctgagc gaccgctgta cggttccgta ttgcatgtct tcgcggcatt gcatctcgcg 3600 gccgtttctg atgtcgacgt actgtacgtt gactcgctgc gcagcgtgta caacgagttg 3660 ggtggtaacc tgaagaaggg cggtgtgtct cgtcaagttg acggcatgct caccgcactc 3720 gatcagtacg cgcgcgcggt caatatgcgt gttgtattca ccctcaaccc gtccgatgac 3780 gagaacgttg acgcagctgt gcgctccgtc ttcaagaccg catcggcctc catgcacacg 3840 gcgcgacgca tcaagtcgtt cgcggttaac ggcactgcct ttacggccga aaccgagatc 3900 catttgcgtg ctgaccgctc gaactcggcc aaccgtgtta gcggtgacct ggtctcgcgg 3960 ggtgtcagca acgcaaacgc catcggtgcg gtgttcaatc aattcttgtt gtccggtcag 4020 gacggcagtg cattcctcgg gccaaacatt cccgaatcca attacattga aggagttgac 4080 aaatgagtaa gcttgatctg ggtcgtgttg atttgctttc catgctcggt aactcgagct 4140 ctgctggcgt cgacaccgcc aaaggcgtca ttcctttctc caccagtggc gccacctggg 4200 ccgtacctcg cctgtctgaa gacggcatca cgtcgcactt ccttcgtcgt cgtggctacg 4260 tcaccatgac tcaaggcggt tctcgcgacc agaacgctgc cgttcgcaag atcctctcgc 4320 tcatcatcgc ctacgatatt caaactcagg cgtgcttctt catttctaat gaagaatcga 4380 tgcgtatcac catggccgag accatgggcg tcaaggatcg tccaaacgcg cgcaccaact 4440 cctgggcgga agtcagcgat tcggacatca atcgtggtat cgccaaagcg ctcaaagagg 4500 gtaatctgac tctcgatgag aaccagaaag atggcttcat gaagctcgtg catgctttcg 4560 tggccgacat tctcgcgcaa agcgggcact acaagccggt gacctcggtt acctacttca 4620 gtgctccaat cgacatggag tcggattatc tcgatccgtt ctccatcgcc atcattcgtg 4680 acgtactcga tgacagcccg ttctcggaac tgcgctacga tgcgcgcgca atgtccgagc 4740 ttgaagatcg tgatgttcca atcacgcgct tctctcgtgt gatggcccag atgggcaacg 4800 ccatggtgcg caacatcatg gtgctcaacg aagcggctca gcgtaagctc cgcggtctgg 4860 cagtcgttgg tgagatcgtt cacggtcgtg ttcgtgcgcc tgtgcgctat ctgaatgatt 4920 cgttcattca gacgctgcgt agcaacatca acttccactt gctcacgcgc accactccgg 4980 agcgctgggc tcagagttgg attcaagcct tcggttcgct gaaggggtgg gtcgatgcca 5040 tcaacggaat cgctgatgct acaacggaag aagagaagaa gaagctcgcc atgcagacca 5100 gcatggacct cgagctgctc agtgatctga ctcctctcat tcgcgatgcc gcgacatccg 5160 ttgagaagtt cgtcaccttc gctcctctgt cgttctacca gggcctcggt tctgtgacgc 5220 agattcgcgc gttggattct tctaccaacc tggctgctgt catcgtgcga tacgccgcta 5280 aggaaatcaa tctgattccg gcgtaccaga gcttccaagt gcctacagtc gatgtgggtg 5340 tgaagaagac ggccatcatg gatcaacgtc tgtctctgca attgcctgag ttttccgagg 5400 accagttctt cggcatgctc gagcaacgca tgcagaacat gtcagatagt gaagtggcag 5460 agctggttga tcgcattgct aagggtgaaa ctcctttcgg tgatgtggtt aaacaactgc 5520 caggaacgtc gaccctgctg gtgaccaatg gttactacat gggtggtctt ctgaccaatg 5580 aggacaagat cattcccggt gatgctagtg tgcctgcgct gctgtacatg caggcggcat 5640 cgttcgcgtc atctgtgcgc ttcccacccg gtgaatatcc tgtcttccac catgagagtt 5700 cgaatggtga tgtgcgtctg acggatcagg tttctgctga tgcgcaactg tcgcatagcg 5760 ccgtggaaac agctaacccg ctgaacttcc ttgtagcgtg caatgtctcc gttcacactc 5820 cgtccatcgc cattgacatc atcgagccga tgcctgactt gactcgtcgt ggtactaccg 5880 agtacgtaca caaaggcgag atcaaggtcg cggctatccc tagcctgcca ccaaagtccg 5940 ccgatcgcaa agcgcaagtg tcccgtgaaa ccgccaagtt tgaacgtgtg ctgtacaagg 6000 cacgcaaagg tggagctcag gttgcggcgc ctatcgacct ggagtcgttg ttcggtatcg 6060 ctgtcaacct cgccgtgcct acggtgaaac atgtctactc gccagatagc aaaacgaagc 6120 tggcgttgga tatcatcaaa gggctcgaaa gtgagggtga taaagcagcg gccacccgcc 6180 tgctcatgac cctcgctcgt gcgtacacgg gcacttactc gtccctcggc ttgcgtcgtc 6240 gtgacgagat cactggtatc gccgcgcagc ctagcgacgt cgccatgcaa gagtttgctc 6300 tgcagtccgg agttcaaact ctgaaagccg ttgctaaaca caccggcatc atggaggtcg 6360 ctacgatcga aatggttgaa gagaaggtcc gtagtctgga cgacaatcgc ttctatgaga 6420 tcgcggctga agtggtcctg cgcgcactga aaggtatgtg acatgaccga tcctataaca 6480 gcagttgcaa tcaaccgctt agtcgatacc atcgaccgag cggcgtgggc atccatggag 6540 gatgaggaga aactgggcta catccggcgc tacgttagtg acgccgatga tcttggtatc 6600 tcccctcgca tggtggatga cgtactggat ggtatatcca gtaagcctgt ggttcaagat 6660 gatgtcttcg gagaggccga aacggcttcg tcgttggcat cacggcttgc caccacactt 6720 acgagggcta ctgcgctgag aaccgtcatg gtagacggtt atcgcgtcgt tgtaggtcgc 6780 gtaggtgagt tgacactgtc ggctcgcgtt gtacaggaag accaccgcca ggtggtcgtt 6840 ggctacattc gtgtagcgca tgacgttgga ggtgatgaat acacacgcat gtgtgcaaac 6900 atcgctcgca acgaagttga ctacgatcgt atcacgatcg gaggagacga atcatcgttg 6960 gaagacgatg aacaagcaga tgaggcgtaa gtctatctgc gacccgaaag ggtaacccgt 7020 aacaggggtg aggagcttag ctcctcactt c 7051 //