ID   AF226158; SV 1; linear; mRNA; STD; VRL; 1075 BP.
XX
AC   AF226158;
XX
DT   05-SEP-2000 (Rel. 65, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
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DE   Raspberry ringspot virus isolate Shepherd segment RNA2 polyprotein mRNA,
DE   partial cds.
XX
KW   .
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OS   Raspberry ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-1075
RX   DOI; 10.1016/S0168-1702(00)00158-1.
RX   PUBMED; 10958983.
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68(2):119-126(2000).
XX
RN   [2]
RP   1-1075
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (19-JAN-2000) to the INSDC.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377,
RL   Clemson, SC 29634-0377, USA
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DR   MD5; bdc00f288a4affbcdbc8af1de01f352f.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1075
FT                   /organism="Raspberry ringspot virus"
FT                   /segment="RNA2"
FT                   /isolate="Shepherd"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:12809"
FT   CDS             <1..>1075
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /note="putative movement/helper protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q9E7K8"
FT                   /protein_id="AAG10244.1"
FT                   /translation="QDSIQSMGDFWKEFYAKDSGKKIPDSHKSRLANDPNKVGFTKSAL
FT                   FHKQPLSHSLAQTRANFRGTQDKADLVKVTMDMNIEKYTVRLPDAVRTTAGPLYIEWIN
FT                   LPRMSENSARKLAEVGWNNADICGVDLAVKSHIAVGTPVRVIISLVDGACSDMPTATMC
FT                   AFEVNLASQNNRSLNLPLLSLPFSRLLADLHDFQNRVKIACQFRDPEGFNVGTPMLSFS
FT                   SLEFSELKQTAFERNSLLRDSWSEIEKRACHGGGRCVASQGIVQTWEKEVNPPLKEYAP
FT                   LVLPPVPQPKRSFIDQQTGEVVQPFMQKSRSMRFQSPSDLWSRPSVDGGSTSTQPPSKG
FT                   SLRCDNVPGCAYEVDPL"
XX
SQ   Sequence 1075 BP; 280 A; 232 C; 252 G; 311 T; 0 other;
     gtcaagattc catacagagt atgggtgatt tctggaagga gttctatgcc aaggactcag        60
     gaaagaaaat acctgactct cataaatcga gactagccaa tgatcctaac aaagttggct       120
     tcactaagag tgcgttattt cataaacagc ccctatcgca ctctcttgct caaactcggg       180
     caaattttag gggcactcag gataaagcgg acttggtcaa ggtgaccatg gacatgaata       240
     ttgaaaaata tacagtccgc cttcctgatg ctgtgaggac tactgcaggt ccattataca       300
     tagagtggat aaatctgcca cggatgtctg aaaattctgc acgcaagctt gctgaagttg       360
     ggtggaataa tgctgatatt tgtggcgtgg accttgcagt taagtctcat atagcagtgg       420
     gtacacctgt gcgagttatt atttccctcg tagatggtgc ttgttcggat atgcccactg       480
     ctacaatgtg cgcttttgag gtaaacttag cttcgcagaa caatagatct ttaaatctac       540
     cactgctgag tttacccttt tctagacttt tggctgatct acatgacttc caaaatcgtg       600
     taaagattgc ttgtcaattt cgtgatcctg aaggatttaa cgtgggtaca cccatgttga       660
     gtttttcttc ccttgaattt tctgagctga agcaaactgc ttttgagcgt aattctttgc       720
     ttagggattc atggtctgaa attgagaagc gggcttgtca tggtggcggc cgttgtgttg       780
     cttcccaggg tattgtgcag acctgggaaa aggaggttaa tcctcccctc aaagaatatg       840
     caccgctggt tttaccaccc gtccctcaac caaaaagaag ttttatcgac caacagacgg       900
     gagaggtggt tcaacctttt atgcaaaagt cccgctccat gcgatttcag tcaccatctg       960
     atttatggag caggccctct gtggatggag gttcaacatc tacacaaccg ccatcaaagg      1020
     gttctttacg gtgcgacaat gtgcctggtt gtgcctatga ggtagatcca ctaca           1075
//