ID AF224760; SV 2; circular; genomic DNA; STD; VRL; 2632 BP. XX AC AF224760; XX DT 15-FEB-2000 (Rel. 62, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 6) XX DE Cucurbit leaf curl virus segment A, complete sequence. XX KW . XX OS Cucurbit leaf crumple virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2632 RX DOI; 10.1094/PDIS.2000.84.4.488C. RX AGRICOLA; IND22064479. RA Guzman P., Sudarshana M.R., Seo Y.-S., Rojas M.R., Natwick E., Turini T., RA Mayberry K., Gilbertson R.L.; RT "A new bipartite geminivirus (Begomovirus) causing leaf curl and crumpling RT in cucurbits in the Imperial Valley of California"; RL Plant Dis. 84(4):488-488(2000). XX RN [2] RP 1-2632 RA Hernandez N.A., Sudarshana M.R., Guzman P., Gilbertson R.L.; RT "Generation and characterization of infectious clones of Cucurbit leaf RT crumple begomovirus, a new bipartite geminivirus from the Imperial Valley RT of California"; RL Phytopathology 90:S35-S35(2000). XX RN [3] RP 1-2632 RA Guzman P., Sudarshana M.R., Gilbertson R.L.; RT ; RL Submitted (14-JAN-2000) to the INSDC. RL Plant Pathology, University of California at Davis, Davis, CA 95616, USA XX RN [4] RC Sequence update by submitter RP 1-2632 RA Sudarshana M.R., Hernandez N.A., Guzman P., Gilbertson R.L.; RT ; RL Submitted (25-OCT-2000) to the INSDC. RL Plant Pathology, University of California at Davis, Davis, CA 95616, USA XX DR MD5; e581707bd47b33fe7d6c63306176b6ea. DR EuropePMC; PMC3550763; 23637479. XX CC On Oct 25, 2000 this sequence version replaced gi:6942305. XX FH Key Location/Qualifiers FH FT source 1..2632 FT /organism="Cucurbit leaf crumple virus" FT /segment="A" FT /mol_type="genomic DNA" FT /country="USA:Imperial Valley of California" FT /note="infectious clone generated by PCR" FT /db_xref="taxon:134681" FT misc_feature 30..2468 FT /note="common region" FT CDS 217..966 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q9J0E0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9J0E0" FT /protein_id="AAF32403.2" FT /translation="MPKRDAPWRSLAGTSKVSRSANYTPRGGPKLDKAAVWVNRPMYRK FT PRIYRTFKSPDVPKGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCV FT KSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKN FT DLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLL FT YMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(963..1361) FT /codon_start=1 FT /gene="AC3" FT /product="Ren protein" FT /note="replication enhancer protein" FT /db_xref="GOA:Q9E7L1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9E7L1" FT /protein_id="AAG26083.1" FT /translation="MDSRTEERITRFQAENSAFIWDVPNPLYFKMYNVEDPIYTTTRIF FT HIQIRFNHNLRRALNLHKAFLNFQIWTTLRQVSGTTYLKWFKHLVLLYLDRLGVVGLNN FT VIRAVVFATDKPYVNYVLENHDIKFKFY" FT CDS complement(1102..1497) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /note="transcription activator protein" FT /db_xref="GOA:Q9E7L0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9E7L0" FT /protein_id="AAG26084.1" FT /translation="MPSSSSSKAPSIKAQHRAAKTRAIRRRRIDLDCGCSIYLHLNCAD FT YGFTHRGTHHAVSGREFRFYLGRSKSPLFQDVQRRGPNLHNNEDIPHPDQIQPQPQEST FT KSSQSIPELPNLDDITSSFWDDLFKMV" FT CDS complement(1433..2488) FT /codon_start=1 FT /gene="AC1" FT /product="Rep protein" FT /note="replication initiator protein" FT /db_xref="GOA:Q9J0E1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9J0E1" FT /protein_id="AAF32402.2" FT /translation="MPRNPNSFRISAKNIFLTYPQCDIPKDEAIQMLQHLNWSIVKPTY FT IRVAREEHSDGFPHLHCLIQLSGKSNIKDARFFDLAHPRRSTSFHPNVQAAKDANAVKN FT YITKEGDYCESGKYKVSGGTKSSKDDVYHNAINAGSAGEALDIIKAGDPKTFIVNYHNI FT KANIERLFHQPPETWACPFPLSSFTLVPEELQEWADDYFGRDAAARPMRARSIIIEGDS FT RTGKTMWSRSLGKHNYLSGHLDFNSRVYSNEAEYNVIDDVAPQYLKLKHWKELIGAQRD FT WQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENESLREWTIKNAQFIFLEGP FT LYQSTAQSSED" XX SQ Sequence 2632 BP; 681 A; 582 C; 602 G; 767 T; 0 other; accggatggc cgcaaatttt tggtgtcctc tcggcccaag gcccagccca aatccccggc 60 ccatgattca accacaactt tacccttttg gaccacgtaa aagaatacgc accaaccgcg 120 ttgcttctga caagtctaca tatttatgct ttcttgacta agacgtggtc ctttatctat 180 aaatgataat gacaatttag gacactttaa ctcaaaatgc cgaagcgcga tgccccatgg 240 cgttcattgg cggggacctc aaaggtttcc cgctctgcta actatactcc acgtggaggt 300 cctaaattgg acaaggccgc tgtgtgggtc aaccggccca tgtaccggaa gcccaggatc 360 tatcggacat tcaagagtcc cgatgttccc aagggttgtg aagggccgtg taaggttcag 420 tctttcgagc agcggcatga tatatctcat gttgggaagg tgatgtgcat atctgacgtg 480 acccgtggta acggtattac tcatcgcgtg gggaaacgtt tttgtgttaa gtctgtatat 540 attttaggga agatctggat ggacgaaaac atcaagttga agaaccacac taacagcgtt 600 attttctggt tggtaagaga ccgtcgaccg tatagttctc ctatggattt cggccaagtg 660 ttcaacatgt tcgacaacga gcctagtact gcaaccgtta agaacgatct ccgcgatcgt 720 tttcaagtga tgcacaggtt ctatgcaaag gtcactggtg gtcaatatgc gagcaacgag 780 caagccttag ttaggcgatt ttggaaggtc aacaaccacg tagtctacaa ccaccaggaa 840 gcaggaaaat acgaaaatca tactgagaac gctttgttat tgtatatggc atgtacgcat 900 gcctctaacc ccgtgtatgc gacattgaaa attcggatct atttttatga ttcgataaca 960 aattaataaa atttgaattt tatatcatga ttttcgagta catagtttac atatggttta 1020 tcagttgcaa atacaacagc tcgtattaca ttattcagtc caacaacacc taatctatct 1080 aaatacagaa gcactaaatg tttaaaccat tttaaataag tcgtcccaga aacttgacgt 1140 aatgtcgtcc agatttggaa gttcaggaat gctttgtgaa gatttagtgc tctcctgagg 1200 ttgtggttga atctgatctg gatgtggaat atcctcgttg ttgtgtagat tgggtcctct 1260 acgttgtaca tcttgaaata gaggggattt ggaacgtccc agataaaagc ggaattctct 1320 gcctgaaacc gcgtgatgcg ttcctctgtg cgtgaatcca taatcagcac agttcaaatg 1380 caggtatatt gaacaaccgc agtccaagtc tattcgtcga cgccggatgg ctctagtctt 1440 cgctgctctg tgctgtgctt tgatagaggg ggccttcgag gaagatgaac tgggcatttt 1500 tgatcgtcca ctctcttagg ctttcatttt cctctttatc gaggaaatct ttataagatg 1560 ccccctctcc tggattgcac agcacgattg atgggattcc tcctttaatt tgaactggct 1620 ttccatattt acagttggac tgccaatccc tttgggcccc tatcaattct ttccagtgct 1680 ttagctttag gtattgcgga gcgacgtcat caatgacgtt atattcggct tcgtttgagt 1740 aaaccctaga attgaaatcc aggtgaccgc taagataatt gtgcttgcct aacgaacggg 1800 accacatcgt cttccccgtt cttgagtcac cttctatgat tatacttcta gctcgcattg 1860 gccgcgcagc ggcatccctc ccaaaataat catcagccca ctcctgtaac tcttctggaa 1920 cgagagtgaa cgatgataac ggaaatggac atgcccacgt ttcaggtggc tgatgaaaga 1980 ggcgctcgat gttagccttt atgttatgat agttcacaat aaacgttttt ggatcaccgg 2040 cttttataat gtcgagagcc tctcccgcac ttcctgcgtt gatggcgttg tgatagacgt 2100 cgtccttgct agattttgta cccccagaga ccttgtattt cccggactca caataatcac 2160 cttctttggt gatgtaattc ttgacggcgt tggcgtcttt ggctgcctga acatttgggt 2220 gaaaactggt agaccttctg gggtgagcaa ggtcgaaaaa tctagcatcc ttgatgttag 2280 acttaccgga taattgaatg aggcagtgta agtgcgggaa cccgtcggaa tgttcctctc 2340 gtgcgactct gatatacgtc ggtttgacga ttgaccagtt aagatgctga agcatctgaa 2400 tagcttcatc tttcggaatg tcgcactgag gatatgttaa gaaaatgttc ttggctgata 2460 tacgaaagga attagggttc cgtggcatat ttgtaaataa gagccaggac accagcggga 2520 gctctctcca gaaactattg tttgtggtgt cctggtgtcc catttatatc taaaggctaa 2580 aagtctctac ctaggacacc aaggggcaaa attggccatc cgcaataata tt 2632 //