ID AF220561; SV 1; circular; genomic DNA; STD; VRL; 8010 BP. XX AC AF220561; XX DT 02-JAN-2002 (Rel. 70, Created) DT 02-JAN-2002 (Rel. 70, Last updated, Version 1) XX DE Rice tungro bacilliform virus Chainat isolate, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8010 RA Nathwong B., Ratanakarn W., Chettanachit D.; RT "Complete Genomic Sequence of Rice Tungro Bacilliform Virus - Chainat RT Isolate from Thailand"; RL Unpublished. XX RN [2] RP 1-8010 RA Nathwong B., Ratanakarn W., Chettanachit D.; RT ; RL Submitted (04-JAN-2000) to the INSDC. RL Plant Genetic Engineering Unit (BIOTEC, NSTDA), Kasetsart University RL Kamphaengsaen Campus, Kamphaengsaen, Nakhon Pathom 73140, Thailand XX DR MD5; 6b0854731602bb6a2f067aedb584e9c5. XX FH Key Location/Qualifiers FH FT source 1..8010 FT /organism="Rice tungro bacilliform virus" FT /strain="Chainat isolate" FT /mol_type="genomic DNA" FT /country="Thailand" FT /clone="pRTBVCN" FT /note="Badnavirus" FT /db_xref="taxon:10654" FT CDS <68..667 FT /codon_start=1 FT /gene="ORFI" FT /product="P24" FT /note="translation start site unknown" FT /db_xref="UniProtKB/TrEMBL:Q8V6W2" FT /protein_id="AAL55649.1" FT /translation="VLKRNLTSQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP FT TKKQVEKLLENQNLISKNFDYIKEQNAQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE FT LRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST" FT CDS 664..996 FT /codon_start=1 FT /gene="ORFII" FT /product="P12" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q8V6W1" FT /protein_id="AAL55650.1" FT /translation="MSADYPTFKEALEKFKNLESDTAAKDKFNWVFTLENIKTTADVNL FT ASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGTIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 993..6026 FT /codon_start=1 FT /gene="ORFIII" FT /product="P194" FT /db_xref="GOA:Q8V6W0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q8V6W0" FT /protein_id="AAL55651.1" FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQDVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNA FT GCGVFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKIN FT VKDIVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNQENTSRVPTKALIYQNLHGGE FT SLRFSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMETPEEELRAAVQQLEK FT EKQAMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFERLGLTGWEDLDQD FT SIETEEITEWENPNQVLHREIKAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLD FT KIEKAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNF FT ERIGSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMD FT GRITGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRL FT AQRELEALNCEDPTKIQPFMAEYFKKASEAKKGFDIVYVERLFDRLPEAVGKVVKADFV FT KDGNSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKR FT VTNYNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVS FT IASDDEDIENFLEIIELDEFIAHSSQEHEHTWEVGGKKDKVCEICSYFTDYNKTVSCKI FT CETQYCKTCSDQLAIEVREVKKPTKEEEMLEDLKLNVKNLEFRVTILEHKAEMQNIQDK FT FEAMQIRSKPEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALI FT DSGSTHNIICPTLIPASWINSTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGI FT KYKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFA FT RKHGGRPPLFSNIPETYNKIPHLHSYQPPILGYKNEIGNQSLITMVKELEALGFIGDDI FT TKNRTNWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT FT AAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKA FT GFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYID FT DILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKINLQPH FT IVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKED FT WNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLICKPDKYSGKDTEKIAGY FT ASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK FT TRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSE FT SIPLYIDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT CDS 6047..7216 FT /codon_start=1 FT /gene="ORFIV" FT /product="P46" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:Q8V6V9" FT /protein_id="AAL55652.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHESRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLNDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGIYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGEDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVEED FT EGEVVYISKNTKIIKVTKEHAWAWPERDGDTMSCSTSIEDEWIHRMDNA" XX SQ Sequence 8010 BP; 3276 A; 1215 C; 1451 G; 2068 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaatagaa tacaatctag tcaaactaat 60 tacataagtt ctgaagagga atcttacttc tcaaaatatt gagtcgcgtt acgaaaaact 120 tgaattctta gacttagcag tctggggaaa agagaaaaaa caaaaatatt tattatctac 180 tgataatatt agcttttatt gttactttga tactagtaaa accagtgaat cagaaaggaa 240 gcataccttt cattctgata ataagcaact taatagtatt gtagatctta ttattaagca 300 ttctgaaaaa accaaaaata ttaaggaaga attagaaaaa tatagccagt tcttagataa 360 gatattagac ttaaaaccta ctaaaaaaca agttgaaaaa ctactagaaa atcaaaactt 420 aattagcaaa aattttgatt atattaaaga acaaaacgct cagctagaaa aatccctaag 480 aaaaacagtt aagttagaag actctattaa tactctatta gtagaaatac aacaagctag 540 accgaaggaa gtagaattaa gaactcttaa gatagcagaa caaaactcta aggcaataga 600 aaaatttgaa caagaaatta aggatctaag agaaatacta gaatacctca agcaccaatc 660 tacatgagcg ctgattatcc aactttcaag gaagcccttg aaaagttcaa aaatctagaa 720 tcagacacag ccgctaaaga taagtttaat tgggtattta ccttagaaaa tataaaaaca 780 actgcagacg taaatctagc atctaaggga ttagtacaac tttacgcttt acaagaaatt 840 gataaaaaga taaataatct tacagctcaa gttagtaagt tacctacaac tagtggaagt 900 agttcagcag gaactatagt acccgcagga agtaacaccc aaggtcaata taaagcacca 960 cctaaaaaag gaattaagag aaaatatcca gcatgagtct tagaccattt actggcactt 1020 ctagaactat aacccaagat tcaacctctg aatctaatat taaaaaaggg aaaaattcaa 1080 caaaaagaga attaatagaa gaagtagatg ttaatcaaga tgtagaaaac tttgattgga 1140 aaaaattatc aggaattaaa cctaataaac tatatgagaa aaattggcaa gaaaaggtta 1200 agttaaaaca acaatctata gtttcggcat ataaagaaga agctattagt gtaacccata 1260 atgcatatac tactacttta tttccacaag aagtaattaa aaatgttaag aatcagggaa 1320 aattatatta ccatataggc atgatggcca taggagttaa aggacttaaa ggacttcata 1380 gaagaaaaat aggaactaaa gtcatgataa tgttttatga tgatagtttc ggcaaagcta 1440 gagaagctag cattggatca atagaaatgg atatgaacgc aggttgcgga gtattctact 1500 cctgccccga ctttgccaaa tatattaaag atttatcaca tcttaagata gggatacaaa 1560 ccctaggata tgaaaattat gaaggaaaaa acctttcggt agcaatcaag actataggaa 1620 gattaactac caatatacaa tcaaaatata agataaatgt aaaagatatt gtagaacaaa 1680 tatcatcaca aggaatcatt atggtagcac ccatggaaat agattcatca cacttagatg 1740 ggaatgaatg ggatcttagt aagttcttaa atcaggaaaa cacaagtaga gtcccaacta 1800 aagccttaat atatcaaaat ctacatggag gagaatctct aagattttca aactataagc 1860 aaactagaat gcatgatcct actgaaaata attcagatga ggatgaagat ttaaaaatct 1920 taggagaaca actaaatatt aaaatggcaa gattttatac tatggaaact ccggaagaag 1980 aattaagagc agcagttcaa caattagaaa aggaaaaaca agccatgata gaaaaattag 2040 aagctaaaat gaaagaatca tcaaaaatgg caatagtaga agataacttc aatccaaaca 2100 atgaatatct agaggataca tattctgaat atgaagattt agaatttgaa agattaggat 2160 taaccggatg ggaagacctg gatcaggact ccatagaaac cgaagaaata actgaatggg 2220 aaaatcctaa ccaagttctt catagagaaa ttaaagccta taaatcagta tcagaacaaa 2280 tagaagatat atttggagaa ttattaaaag aacatggaaa ctatgatatg gcccttaaaa 2340 acctagaaga aaaatatgat ctagataaaa tagaaaaggc caaatctata gaagaaatag 2400 ctaaatcatc cacatcatca gaaattaggc caactaaacg tcctaaagaa gaacaaacag 2460 cctatgaaga tgacatgaga gatgattgga aaagaaaaga attaacagta aatcccatag 2520 aagcctcaaa agataggaat tttgaaagaa taggaagttc ttataagaaa aatttctatc 2580 ccagcagaag tgaaatatta aacttagata acgttccccc acaattttac tatgaccaac 2640 tagtaacctg ggagggaata gttaaaaatg aatgggaagc acgtaagaaa gatgggatgg 2700 atatgtggtc ttggatggat ggtaggataa caggattagt tttatattta gtccaagatt 2760 ggatatctaa aaatcaggca gcttataatg atataaaatc tagaggagat agaccagaaa 2820 actttgtaaa aatggtaaaa gatagattct taatagaaga cccaacagat gaaagaagaa 2880 cagcactaca aaggttagca caaagagaat tagaagcctt aaattgcgaa gatcctacta 2940 aaattcaacc atttatggct gaatatttta aaaaagcttc agaagccaag aaaggattcg 3000 atatagttta tgtagaaaga cttttcgata gattaccaga agcagtagga aaagtagtaa 3060 aagccgactt tgtcaaagat ggtaattcct atgaagcagg aataggaata gcggtttcat 3120 atatatccac atggatgaga gcaaaatgca ttaaggaaac agaagctaaa actcaaaaga 3180 aagcatcctt agcattctgt agatccatat atactatagg agattataag aaacgaaaaa 3240 tcttaaaaag agtaacaaat tataataaaa ataggaggaa aaactatgtc agaagaccca 3300 gtataaagaa aaaatgtaga tgttatatct gtcaagatga aaatcatcta gccaatagat 3360 gtcctagaag atataccaat caggctagag caagtctaat agatgggtta gatgaagata 3420 tagtatccat agcatcagat gatgaagata ttgaaaattt ccttgaaata atagaacttg 3480 atgagtttat agcacattct agtcaagaac atgaacatac atgggaagtt ggaggaaaga 3540 aagataaggt atgtgaaata tgcagttatt ttacagacta taataaaact gttagctgta 3600 aaatttgtga aactcaatat tgcaaaacat gttctgatca attagctata gaagtaagag 3660 aagttaaaaa acctaccaaa gaagaagaaa tgctagaaga tttaaaatta aatgttaaaa 3720 acctagaatt tagagtcact attctagaac ataaggcaga aatgcaaaat atacaagata 3780 aatttgaagc aatgcaaatt agaagtaaac cagaaataac agaaatacca acaacttcat 3840 tagctatgag agcaaatgaa tcaaattata taaaaacatc aattaataaa actgcaggat 3900 gttatgtaga aacaaaaatc tcatttaata atgaaaatag aatcataaca gcactaatag 3960 attctggttc aacacataat ataatatgtc caaccttaat cccagcatca tggattaata 4020 gcacacatag agaaatcatt atgtttgccg tagataatag caaatataat ttaaatcaag 4080 aactaataga tgatataaaa ttacaattcc aagaagttga tgaaaccttt ggaataaaat 4140 ataaattagg acaaacctac gtagcaccta agccaactaa aacattcata ataggacata 4200 ggttccttac aaatgaaaat ggtagtgtta caatccataa agattacata actatacaaa 4260 aaactactgg aatataccca acagcccggc atgaacttaa atcagagttt gcgcgaaagc 4320 atggtggacg cccgccatta ttttcaaaca ttcctgaaac ctacaacaaa attcctcatt 4380 tacattcgta tcaaccaccc atattaggat ataagaatga aatagggaat cagagtttaa 4440 tcactatggt aaaagagtta gaagcacttg gattcatagg agatgatata acaaaaaata 4500 gaacaaattg ggtatgtgac ttcaaaatta taaacccaga tattaatata acctgtgcaa 4560 caattccata tacaccagca gataaagaag tatttgaaaa acagataaaa gaattactag 4620 ataataagtt aatcaagaaa gccgatccga catgcagaca cagaacagca gcattcatag 4680 taagaaatca ttctgaggaa gtagctcaga aacctcgaat agtctataac tataaacgtt 4740 tgaatgacaa tatgcataca gatcctttta atatacctca taagatttca atgatcaatc 4800 tgatacagaa agctaatata ttttctaagt ttgatttaaa agcaggattt catcatatga 4860 aactaaaaga tgatttcaaa gattggacta cttttacctg ctcagaagga ctatatactt 4920 ggaacgtctg tccatttggt atagctaacg ctccttgtgc atttcaaaga tttatgcagg 4980 aatcctttgg agatttaaag tttgctttat tatatataga tgacatactt attgcatcca 5040 ataatgaaaa agaacatata gagcatctta agattttctt taatagagta aaagagatag 5100 gatgtgttct tagtaagaaa aaatcaaaga tgtttctaaa agaagtagag tatcttggag 5160 tagaaattaa agaaggtaag atcaaccttc agccacatat agttgataag atcaaaaaat 5220 ttgataaaaa taagctcaat actttaaaag gactacaagc atatttggga ttactcaatt 5280 atgccagagg atatattaaa gacctatcaa aactagtagg accactttat aaaaagacag 5340 gaaagaatgg gcaaagaatt tttaacaaag aagattggaa tattatcttt aagatagaaa 5400 gagaggtatc aaagataaag cctttagaaa gacccaaaga aaccgactac atcattatag 5460 agacagatgc gtcagaagaa ggatggggag cagtcttaat ctgtaagcca gataaatata 5520 gtggaaaaga cactgaaaaa atagcagggt atgcatcagg aaactttgga gaaaagaaaa 5580 catggactag tttagattat gagatagaag ccataaatga agccttaaac aagttccaaa 5640 tatatttaga caaagatttt acaatcagaa cagattgtga agcaatagta aaagggataa 5700 aaactgaaga ctataaaaag agatcaaaaa caaggtggat caagttaaga gataacctct 5760 taaaagatgg ttacaagcct acctttgagc atatcaaggg aaacaaaaac tttttaccaa 5820 acttcttatc ccgcgaggga gattttattt taaaatgtct tcaaaacccc gattctacgg 5880 aatcatattc tatagattcg tcagaatcaa ttccactata tatcgattcg aaagaatcac 5940 attctataga gtctgatgac tcaattccac tatacaggga caagcttctt cctctagtcg 6000 aaagactaaa ggagaaaagt gcttaactaa gatcggaggc atcaccatga atatagagta 6060 cccgtactca atccacataa tagacaagaa caaggttccg atctacgatc aaggaaatct 6120 cttccacact gagaagtctg caagactttc acatgagtct agaggtttgc tagatcatct 6180 ctttactttt tcgtctgata atactgagcg agttaggaag ctccacatat tagccgatta 6240 tctttaccta ttagaaagtg agagagagtc atataaaaat gagtggatta gcctgaatga 6300 tcaggttagt cttctacaaa aacaaaatag tgagttgagg gctaggatag ccaccaataa 6360 agaaataata gagggactga gagagccagt taaaaagcca atatacacaa cccaagataa 6420 agagaggctc cgtgttttct tttgcgaaga aagaagcatg gaatatatat actatcatat 6480 aaagaggcta gctcaacaga gctattattc tcatctaaat aagttacaga aggattgtga 6540 gccctttcga gggatctaca tgtctttctt aactaatgtt aaattcctag tactatgtga 6600 agccggatac tggactgttc cagatataga aactaatact acagaatctt tattaagctt 6660 atctcagaag aaaggagaag atctgctaca aaagggagtg gtaatattta atgagcttga 6720 aggaggatat caactttctc caagattcat tggagacctt tatgctcatg gttttattaa 6780 acaaataaac ttcacaacca aggttcctga aggattaccg ccaatcatag cggaaaaact 6840 tcaagactat aagtttcccg gatcaaacac cgtcttaata gaacgagaga ttcctcgctg 6900 gaattttaat gaaatgaaga gagaaacgca gatgaggact aatctatata tcttcaagaa 6960 ttatcgctgt ttctatggct attcaccatt aaggccatat gaacctataa ctcctgaaga 7020 atttgggttt gattactaca gttgggaaaa tatggttgaa gaagacgaag gagaagtagt 7080 ctacatctcc aagaatacta agattatcaa agttactaaa gagcatgcat gggcttggcc 7140 agaacgtgac ggggatacaa tgtcctgcag cacatcaata gaagacgaat ggatccatcg 7200 tatggacaat gcttaaagta gctttttcta aagcaacttt aagtgcgaat caataaagaa 7260 ggaccagaag atataaagcg ggaacatcgt catgtgctac ctcgtggcta gcatctttag 7320 catctttact ttacaattat tgtaagcatg ggtaatgacc aatgtacccc tggactccag 7380 tatataagga gccctagagt attgtaatgg atcatcgatc aagcaagcga gagctcaact 7440 tctaaaagag agcaagagag gagcttatcc tctcaacccc tcttcaagaa gcaaaggcga 7500 tcaatggctc aggtcagtga gtagtcgtct ttaaggttcc tctaggaacc tctgtgtaat 7560 atgtttgtac ttaagattgt atttctcaaa acctatccgc tgcatgaata aagctcttat 7620 attcatccta cacccttgtg ataaaacatg aagtcatacc cgttcaaaga ttaaatgttc 7680 taagaatact tcgaagcatt gaaaaggggg ctaaaggggg aaaaagtacc gtcaggccgt 7740 gttatggcaa gggaagaagt accatgaata ccctatagat gttagaagga aggtaagaac 7800 taagtatctt atgaacaatg ggtagctgat ttctgattat cattaacaag tatcgttata 7860 atctataagc tttgaaagat ctgctagtgt ggataccaaa aggctgtcgt ggttcgccca 7920 gtcgacggat gaggttataa acgaagcact agtaggtaac taagaggctt agggatgagt 7980 aacgagaaaa gttagggggg tgcctagaaa 8010 //