ID AF208498; SV 1; linear; genomic RNA; STD; VRL; 4769 BP. XX AC AF208498; XX DT 06-JUL-2000 (Rel. 64, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Tomato spotted wilt virus isolate Regular2A M segment G1/G2 glycoprotein DE precursor and non-structural protein genes, complete cds. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4769 RX DOI; 10.1094/MPMI.2001.14.2.242. RX PUBMED; 11204788. RA Hoffmann K., Qiu W.P., Moyer J.W.; RT "Overcoming host- and pathogen-mediated resistance in tomato and tobacco RT maps to the M RNA of Tomato spotted wilt virus"; RL Mol. Plant Microbe Interact. 14(2):242-249(2001). XX RN [2] RP 1-4769 RA Hoffmann K.A., Qiu W.P., Moyer J.W.; RT ; RL Submitted (26-NOV-1999) to the INSDC. RL Plant Pathology, North Carolina State University, 2610 Gardner Hall, RL Raleigh, NC 27695-7616, USA XX DR MD5; 590e67fbad95c1974f2e10897c1a43be. XX FH Key Location/Qualifiers FH FT source 1..4769 FT /organism="Orthotospovirus tomatomaculae" FT /chromosome="M" FT /isolate="Regular2A" FT /mol_type="genomic RNA" FT /country="USA: Hawaii" FT /db_xref="taxon:3052585" FT CDS 101..1009 FT /codon_start=1 FT /product="non-structural protein" FT /note="NSm" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:Q9IKB6" FT /protein_id="AAF80980.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKIYPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEEGISDSVAQLSFDEI" FT CDS complement(1278..4685) FT /codon_start=1 FT /product="G1/G2 glycoprotein precursor" FT /db_xref="GOA:Q9IKB5" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/Swiss-Prot:Q9IKB5" FT /protein_id="AAF80981.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTQKI FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNDVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNRGNLCIITHKCTKLCICNKSKA FT SKEHSLECPILSKETDHGYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPERDQCYCNVKEDKIIESIFGTNIIIEG FT PNDCIENQNCAANPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSIGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTRDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKKPSITSTSL FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4769 BP; 1534 A; 849 C; 843 G; 1543 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacattt tgctaagaat aaatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 taaagggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagcaatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctatccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacagggaa 540 acttgtggtt gccctggttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagagtacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcctggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcatcgagg cttgcaagct gataattcct aaagggaaca gtgagaagca 900 gattaaaaaa cagcttaaag aattaagctc taatcttgag agatcagttg aagaagaaga 960 ggaagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcatttt aaatcaaaaa ccaaaacaaa 1080 aaacaaaaga aaaaacaaaa aatcaaaaac aaaaaaacaa aaacaaataa ggctgaaaag 1140 ccaaactttg gtccgaagac tctttttgtt gttttttgtt catttatata ttttttgttt 1200 gttttttgtt tattttatat atacataatc tgactaatgc agaagattga atcaaattta 1260 gcctgtgaca agcagactca gacaaggtga gagaaatcca taggtggcct tcgtcttgtc 1320 attgtatctt tcattaacat aggggctttg atctcagaat catcatcatc ctctatcttg 1380 gatctagatt tataagattc attcttgaca tatcctttac aaatggttgt tagaatagaa 1440 caaaaataaa tcacaaggaa aatgaatgca ataagcaata tcactctgat agtatcaaaa 1500 aatgagccaa aataacttgc aatgaaattg aatgggcttt taatataatc ccagaagccc 1560 catgctgaag aatcagaatt atattgttgt tcttcatgag catactcatc attttgatct 1620 attatgttct ctggttcttc tacaataaca ttattgacca gaacttccac agaaatgtcc 1680 ggattgcctt ctggatacaa cgtcattttc ttcttgtcag gattagcaga acaaaacatt 1740 gttatgttgt atttattaga tcctttttta acagccagct gataagtaga tagagagcaa 1800 gcatctatag aaattgcagt agaaaatgtc aaatctgaga aaaattctaa aatgcaagat 1860 aaaccttgac cgcatagaag acagccattg caatttaagc ttgttgaagt tatggaaggt 1920 ttcttaggag caactttaaa aagatcagat ggaagatcaa cgacaatttt gagtttccct 1980 aaactgaaag ctttttccaa gaaaaaacta gagaaatctt tgaaactaac gggaatatct 2040 gatatttgct ctaaaccaga tctaaatctg tatgtatcat atccgcatgt tttaatagtg 2100 attgattttt tccctattgc tgcacaatcc caagacatgt catctccttc tagagttttc 2160 ttagtaaaaa taggcactcc atcacgagtc aattgtgggt gaccaaacat tttcacagga 2220 tcattcaagt ttgcaatatt tccagaataa atatggctgt caggtccatg agctatcagt 2280 tcacctatag tgataccatc attgtgcaaa tctgcttgta tatcagcttg aaacaaggca 2340 ttttcataag gaacctcttc agtaatcctt gagcactgac ctcctaaaat acctgaaata 2400 caaacatctg ccactatagt tgattttagc actgaataaa ttctgtatga tttatccatg 2460 tcatagatat tccgacagaa tccgcatgta gcaccttcat taattgcaaa acaccaagct 2520 tcttcacatc cccaataaga agttggtgtt atacaaaaat cttggaaacc agttaaagct 2580 tgattttttc tgcaagtgtc acagtttcct gtacaagtgg aataaaaatc tgtgtgagtg 2640 ctttggatag gagctgttgt gtatttttct gaaacttcat aatgaattcc cacacttttg 2700 atataaatca cgaatttttt tgctgtttcc gaggtcttat catttaacat gaatatagtc 2760 cctccccctc ctaaaagaga ttgttctatc atgtatctat atttcccgtc tacgacagaa 2820 tcaaagatca atgattgtct aggcagaatg ttctctggta tgcttgtttc gtttttgttt 2880 agagaatctc ctgcaatcat tccagaaatt ttgtctgtac gattataaga atctattata 2940 ccattcctca atctcttagc ctcatacaga ccaatcgatg ttaaccctaa agagcttcct 3000 gtataatctg aaaacccatt atataaaggt ttgttccgaa ataaatctag gtactcgcaa 3060 cccagtctgc attttataag attatcaata gatgggtttg cagcacaatt ctggttctct 3120 atgcaatcat taggaccttc tataataatg ttagtgccga agatactttc tataatctta 3180 tcttctttca cattacagta acattgatct ctttctgggc atttttcaaa tttgcttgta 3240 accaaaaatg gacagcctgg aacataaaaa catccactca aacattgggt agtttgagcc 3300 atagacatgg gcatttgaga caaaatgatc aaacctatta agatttcagt cacaaatttc 3360 agcaaactaa agctcagttt agtgttcact attagatgga accattccat gctagtccac 3420 ttgtgtttgt tgtagccatg atctgtttct ttggacaata tgggacactc taaagaatgt 3480 tcttttgaag ctttgctttt gttgcagatg caaagtttag tacatttatg tgtgattatg 3540 cacaaattgc cacggttaga acatttaaat gggaaatatt tccataagca atttatgagc 3600 aacaaaatag ggtatgtgat caagcctata agatcatacc agagaaagag gggtttggtt 3660 gtcttgttta ctaaccaccg gatagggaaa tagatcaaca aagctatcaa tattaatctt 3720 atccaagaaa aattgatgca ggctgtttgt ttataaatgc tttttgaata tttgattatg 3780 caatctctaa ctcttttgtt tgtttttggt attttagctg atttgtcacc gcacaagaga 3840 ttgtgctcac catccaacat ttcttcagta aaagtgatgc ttgctgatcc agaaaaggat 3900 atgaccttgt gttccacatt ttcaccaggc ttttttatca aataacccat gatcttctcg 3960 gggctagtga tgctaacagt atagggattg gcaaagttcg atttagttat tttgcagtca 4020 ccagataact ttacagtttg taatgatact gtcccattag taggatacga gttataagtt 4080 ataggataat tatcttgtgt cagactttct gaaatgaaga attttgttcc aactgaaaaa 4140 tgccttttgt tgtcaagttt ggtaatggga ataaccggga ctttggaaaa tctctttggc 4200 agatttaaag aattgtcaca tttttctaaa ccttccgctg aatcagaaac acaggaatat 4260 atgacatcat tattttccac ttgataataa acattataag tggatatccc ttttatctca 4320 cattttaatg aagaagcatt caagcagttg ttagggagat ccgagacaga gattattttt 4380 tgcgtagtcg actcagcaaa aatagggatg gttgattctt cttctcgtat ctgacgggtt 4440 ccaggagtct gagattctag catcagatta gtcaaagtct ccaagatagc cttgcgttga 4500 atcgatgcag cagtgggtac ttcattctca gcagaatcat cataaacctc tggatggtct 4560 ccacgaatta tctctacttt ggcatctgtg gctctgaaga tcaagaatgc caacaagaca 4620 gaactcaggg caattgtgaa aagactcact tttaccacta gttctagtag ttttaaaatt 4680 ctcatcttaa acgtctgctc ggattataat ggttatatga ttaatttcaa gatgtctgga 4740 ttaaggtttt tgtttgcact gattgctct 4769 //