ID AF206663; SV 2; linear; genomic RNA; STD; VRL; 7355 BP. XX AC AF206663; XX DT 21-DEC-1999 (Rel. 62, Created) DT 05-OCT-2012 (Rel. 114, Last updated, Version 7) XX DE Avastrovirus 3 polyprotein gene, complete cds; RNA polymerase gene, partial DE cds; and capsid protein gene, complete cds. XX KW . XX OS Avastrovirus 3 OC Viruses; Riboviria; Astroviridae; Avastrovirus. XX RN [1] RP 1-7355 RX DOI; 10.1128/JVI.74.13.6173-6177.2000. RX PUBMED; 10846102. RA Koci M.D., Seal B.S., Schultz-Cherry S.; RT "Molecular characterization of an avian astrovirus"; RL J. Virol. 74(13):6173-6177(2000). XX RN [2] RP 1-7355 RA Koci M.D., Seal B.S., Schultz-Cherry S.; RT ; RL Submitted (19-NOV-1999) to the INSDC. RL USDA, ARS, Southeast Poultry Research Laboratory, 934 College Station Road, RL Athens, GA 30605, USA XX RN [3] RC Sequence update by submitter RP 1-7355 RA Koci M.D., Seal B.S., Schultz-Cherry S.; RT ; RL Submitted (28-MAR-2000) to the INSDC. RL USDA, ARS, Southeast Poultry Research Laboratory, 934 College Station Road, RL Athens, GA 30605, USA XX DR MD5; 0bc222125daab29a8480ae7b6fd1b768. DR EuropePMC; PMC112117; 10846102. DR EuropePMC; PMC116360; 10954549. DR EuropePMC; PMC1828050; 17343744. DR EuropePMC; PMC2346738; 18321976. DR EuropePMC; PMC479052; 15280469. XX CC On Mar 28, 2000 this sequence version replaced gi:6581107. XX FH Key Location/Qualifiers FH FT source 1..7355 FT /organism="Avastrovirus 3" FT /mol_type="genomic RNA" FT /db_xref="taxon:1239439" FT CDS 21..3398 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 1a; cleaved to yield nonstructural proteins and FT putative serine protease" FT /db_xref="GOA:Q9ILI6" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9ILI6" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAF18462.2" FT /translation="MAQAGRSGDAFASLDQRRERQEEQAQSGLDKVFYFQGVVELFNRM FT KIAYGRTPAWTALMKCNAIYLKDFKTAVGVEGTRYGLFFAEEVTKPTWSPDIGANLITL FT GEKACLDAQNAKYERLQASLKTTSGLVHQVMEKTREAKENLEKANKIQEQLDKVIESNK FT ALHRKIQERNREKMQEYMVRLHNTQKDRDDWVQRCSRLEQENVTLQKRLKEKENALVSV FT GWDLLGWIVISVLVFGLISLADAQNLTPPAKIVITPGQAEFMDLAKLEKIQVRKYRLDS FT CELPPEKGCVLYKDYLTTRPVSFLELMAKCSKPDWVSESSYNETTLMEECIQIFGAEWC FT EGKLVDLVPRKCGEQHVLVNIIEQIEKTREVVTLIYGKVMSYRLDMWITSIFSLVLAGN FT KEKLFKMAPFIFVAWFLNIPVFLTCVAVNIFPVVSLPFILFQIFMPQFVLVNAFLLWLT FT LTLTAFYWSEGPKILMEISYALVYTIGFVLWSLGLAVGVTLKLTMVHQILMFCVVAAAI FT CGTKFACTTITVQHPDGTTAKYTRVGKLKNNVVNQCKKVVTTLQTRGVIPATPAKTASI FT VIVEGKNGTGVGFRFMNYILTAEHVVQGSDIATLKNGSVSVKSKVIKTIPIFESVDNVA FT VLKLPPELNSVKPIKLAKKVQSDYLTLTAYDPNFQHAATFTGWCIIDGNWLNNSFDTKF FT GNSGAPYCDHDGRLVGIHLGTQGVLSQGIVIVDALKNTFQLADQCRPQNFDMDEFLEKV FT IAGTKVSHAAILKELEELREEVQFLKKKCVTYDDYWLCQTIFGQAKGKTKKTVRGRKHL FT VTKRALGKGHFMKMRMLTDEEYQNMIEKGFSAEEIREAVNALREQAWLNYCIDNDVDDE FT GEEDWYDDMVETDRVNQEIDEAIERAMEDRGEFYQKKSRLTFVEQAMMHLIQVSKERSQ FT TAKLEVQKENEAQLVKMFERCVTDENTPEGTTSIAALSTEDDVRLVEGKVIDFTKAKNI FT PVDGEIRREIIPGTKCTEISTGPENKKNILKKKDTHIAEGKVETKSSQQPVDVKDDKPV FT ALEQRKPRACKWCGSSQKHDYRECRFQREKRFCVYCAAMHSMFEGHIRPIECTSCKKSF FT SGIEKLEDHVVSGECQKN" FT misc_feature 153 FT /note="alternate site of translation initiation" FT CDS <3353..4936 FT /codon_start=1 FT /product="RNA polymerase" FT /note="ORF1B; start methionine undetermined" FT /db_xref="GOA:Q9ILI5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q9ILI5" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAF60952.1" FT /translation="EVRRSCGQWRVSKKLIEGPVTTKAPTPVPDWLKIFAWEDDILPPE FT GKTALPENVTLIGHIPVDKLVSRTKKVQDPLLGLVTPWKQDMYDSTTWTVKAYTKMFEK FT FHYHDPVDFVEQYAEFVLLCDNMVLREHDYMANSNITPIMSTEKNVNSTPAYPKFQAYD FT SEAEYLEDCGWQEYLDVVSDPETINRRPLWWCFLKNEVLKREKIEDSDIRMILCTDPIF FT TRIGAMFEQDQNNRMKQQTEIRSAQVGWTPFFGGLDRRVRRLYGDGDRYFVEMDWTRYD FT GTIPKSLFWRIRQIRFFFLHDSHKTPKMRRLYNWYVKNLLEKIILLPTGEVCQVKKGNP FT SGQFSTTVDNNMINVWLTTFEVSYLFFKQRGRLPTEKELQENCSMICYGDDRLLSIRKG FT FVEYEPDTVIDMYKNIFGMWVKRNNIKIQDTPEGLSFCGLTIVKSSTGAYVGVPNVNKI FT LSTLENPVRRLPDVESLWGKLVSLRILCENAPSNVKHFLDEQISNVEEFAARENIQLPE FT VGPDFYSRIW" FT misc_feature 3389..3395 FT /note="ribosomal frameshift slippery site" FT CDS 4955..7129 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF 2" FT /db_xref="GOA:Q9Q3G5" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR032268" FT /db_xref="PDB:3TS3" FT /db_xref="UniProtKB/Swiss-Prot:Q9Q3G5" FT /protein_id="AAF18464.1" FT /translation="MAAMADKVVVKKTTTRRRGRSNSRSRSRSRSRSRTKKTVKIIEKK FT PEKSILKKIDQAERRDAKQLRRIRKKVQGPPVNSRMTTVVTLGQITGNKDNTLERKHKC FT FLNPLLMKSQETGQTATPLSVRASQYNLWKLSRLHVRLIPLAGKANILGSVVFLDLEQE FT ANTAGPESVDTIKARPHVEVPIGSKTVWKVHPRSALGPRQGWWNVDPGDSPTDSLGPAL FT NMWTYLQTVNALQSAGGTQTPYTSALFLVEVLVTYEFSNYGPKPALSQMVSDSFPPASG FT STATLKNTSDGAVAIQLSGAIARKMEEVEPKGRRSNAQTSGVGEVFWAVSTEVVNTVAD FT AIPGWGWLLKGGWFVLRKIFGAANDQNGTYLIYSSVADAQGDNRIYTSVKQTQLTSSRI FT NLVQLTQPNVNQAAVGGSVGAANSIYLPLPQADDQYTPYFVYNFQGERVSTTETGVFCL FT AAIPAATTSSRYNNQITTPSIGYRNASGTGTSFLLDAASWWNILDVTQTGVLFGQPRLG FT VGVMQTMKTLKQHIKDYTEPAIQKYYPGTTNLDEQLKQRLNLAEGDPVISMGDTNGRRA FT ALFYRTSDEKYILFFSTTEDPGAQYQNLKMLYFWNWSYSDTKQQFLDHLRTVQFANLDD FT SQPAPYDSDDDDLSDVTSLFEQADLGDETDFKFNMSIQTSKHLEEEKNYWKNQCERMMM FT EKALSGTSQPLVRFEKAGPRADQSSASGHS" XX SQ Sequence 7355 BP; 2322 A; 1438 C; 1779 G; 1816 T; 0 other; ccgaaagtgt tgtcggggcg atggcccagg cgggtcgcag tggcgatgct tttgcatccc 60 ttgatcaacg gcgggagcgc caagaagaac aggcgcagtc cggccttgac aaggtgttct 120 acttccaagg cgtggttgaa ctattcaacc gtatgaaaat cgcctatgga aggacaccgg 180 cttggacggc cctcatgaag tgtaacgcca tatacttgaa agattttaaa acagcagttg 240 gcgttgaggg tacccgctat gggctctttt tcgcagaaga agtgactaaa ccaacttggt 300 cacccgacat tggagcaaac ttgataactt tgggcgaaaa ggcctgttta gacgcccaaa 360 atgcaaaata tgaaagattg caagcctcac ttaaaacaac tagtggcctt gtgcatcaag 420 tgatggaaaa aactagggaa gctaaagaga acctagagaa agccaataag atccaagagc 480 aacttgacaa ggtcattgag agcaacaaag ctttacaccg taagatacag gagagaaacc 540 gagaaaagat gcaggaatac atggtaaggt tgcataacac gcagaaagat cgtgatgatt 600 gggttcagag atgctccagg ttagaacagg agaatgtcac attgcagaaa aggttgaagg 660 agaaagagaa cgcgctggta tctgttgggt gggatctttt aggctggata gttatttcag 720 tgcttgtatt cggcctgatt tcactcgcag acgcgcaaaa cttgactcca ccagccaaga 780 ttgtgataac tccagggcaa gcagagttca tggacctagc taaattggaa aaaatccagg 840 tcagaaagta ccgactggat agttgtgaat taccacctga gaaaggttgc gtgttgtaca 900 aggattacct taccaccagg ccggtaagct ttttggagtt gatggccaaa tgttcaaaac 960 ctgactgggt ctcggagagc agttacaatg aaacaaccct aatggaagaa tgcatccaga 1020 tctttggtgc agagtggtgt gaagggaagc tcgttgatct tgtaccaaga aagtgtggcg 1080 agcaacatgt cttagttaac atcatagagc aaattgaaaa aaccagagaa gttgtgaccc 1140 ttatatatgg taaggtgatg tcatacaggc tagatatgtg gataacatct atttttagtt 1200 tagttttggc aggtaataag gaaaaattgt ttaaaatggc tcccttcatt tttgtagcat 1260 ggtttttaaa cataccagtg tttttaactt gtgtggcagt caacattttt ccagttgttt 1320 ccctgccttt cattttgttc cagattttta tgccacagtt tgttttggta aatgcctttc 1380 ttctatggtt aacactcact ttaacagcat tttattggag tgaggggccc aaaatactga 1440 tggagataag ttatgccctt gtgtatacca tcggctttgt tttatggtcc cttggactag 1500 ctgtgggggt gacgctcaaa ttgacaatgg tacatcagat attaatgttt tgtgttgttg 1560 ccgcagctat ttgcggaacc aagtttgcat gcacaacaat aacagtgcaa cacccagatg 1620 gaacaaccgc aaaatacacc cgggttggta agctaaagaa taatgttgtg aaccagtgca 1680 aaaaggtagt cacgacattg cagacaagag gcgttatacc agcaacgcct gcgaaaacag 1740 catctattgt tattgttgag ggcaaaaatg gaacaggtgt tgggttcagg tttatgaatt 1800 atattcttac agcagaacac gtggttcagg gatcagatat agcaacactt aaaaatggca 1860 gtgttagtgt gaaatccaaa gtcatcaaaa cgatcccaat atttgagagt gttgacaatg 1920 ttgcagtgtt aaaattgcca cctgagctca atagcgtgaa gcctatcaaa ttagcaaaga 1980 aggttcaaag tgactatctg acactgacag cctatgatcc aaattttcaa catgccgcca 2040 cttttaccgg gtggtgtatt atagatggaa attggcttaa taactccttt gatacaaaat 2100 ttgggaatag tggtgcacct tattgtgatc atgatggtag gctagttggt atccacctag 2160 gcacacaggg tgttctttcc caaggcatag tcattgtaga cgcattgaaa aatacattcc 2220 agcttgcgga tcagtgtaga ccacagaatt ttgacatgga tgagttcctt gagaaagtta 2280 tagcaggaac aaaagtgtca catgcagcga tcctaaaaga actggaagaa cttagagaag 2340 aggtgcaatt tttaaagaaa aaatgtgtca cctatgatga ctactggcta tgccaaacca 2400 tctttgggca ggccaaaggg aagacgaaga aaacagtcag aggccgtaaa caccttgtta 2460 ccaaaagagc tcttgggaaa ggccacttca tgaagatgag gatgctcact gatgaagaat 2520 atcagaatat gattgaaaag ggcttctcag cagaggaaat aagggaggca gtcaacgcac 2580 tccgagaaca agcatggctt aattattgta ttgataatga tgttgatgac gaaggtgagg 2640 aagattggta tgatgacatg gtagagacag atagagttaa ccaggagatc gatgaggcca 2700 tagagcgggc catggaagat cgtggtgagt tctaccagaa gaaatcccgc cttacctttg 2760 ttgaacaggc catgatgcat ttgattcaag tgagcaagga gagaagccag actgctaaac 2820 tagaagttca aaaggagaat gaagcccaac tagtgaagat gtttgagcgg tgtgtcacag 2880 atgagaatac acctgagggt accacctcta tagcggcttt gtccacagaa gatgatgtta 2940 ggcttgttga agggaaagtc attgatttca ccaaagcaaa gaacatccca gttgacgggg 3000 aaattaggag agagatcatc cctggaacaa aatgtactga gatttccact ggacctgaaa 3060 ataagaagaa catattgaag aaaaaggata cacacatagc tgagggtaaa gttgaaacta 3120 agtcatcaca gcagccggtt gacgtcaagg atgataaacc cgtagccttg gaacaacgta 3180 agcctagagc ttgtaaatgg tgcggttcat cacagaaaca tgattaccgg gaatgtcggt 3240 ttcaacgtga aaaacgcttt tgtgtgtatt gtgcagctat gcactcaatg tttgagggcc 3300 atataagacc aatagagtgc actagttgca agaaaagttt ttcaggaatt gagaagttag 3360 aagatcatgt ggtcagtgga gagtgtcaaa aaaactaata gaggggcctg tgacaacaaa 3420 ggcccctacc cccgtaccag attggcttaa aatatttgca tgggaagatg acatattacc 3480 acctgaaggt aaaactgcct taccagaaaa tgttactcta attggacata taccagttga 3540 taagttggtc tcgcgcacca agaaagtcca ggatccatta ttaggccttg taacaccatg 3600 gaaacaagat atgtatgatt caacaacatg gactgtaaag gcttacacca aaatgtttga 3660 gaaattccat taccacgacc cagttgactt tgtggaacag tatgctgagt ttgtgctgtt 3720 gtgtgacaat atggtgttga gagagcatga ctatatggca aatagcaaca tcacaccaat 3780 catgtcaaca gagaaaaatg tcaatagtac accagcatac ccaaaattcc aagcctatga 3840 cagcgaagcc gagtatttgg aagattgtgg gtggcaagag tacctggatg ttgtgtctga 3900 tccagaaact ataaatcgta gacccctatg gtggtgcttc ctcaaaaatg aagttctcaa 3960 aagagagaaa attgaggaca gtgacattcg aatgatattg tgcaccgacc cgatttttac 4020 caggattggg gctatgtttg agcaggatca gaacaacaga atgaaacaac agactgaaat 4080 aaggtctgca caggtcggat ggaccccctt tttcggcggc ttggatcgca gggttcgcag 4140 gttgtatggt gatggagata ggtattttgt tgagatggac tggacacggt atgatgggac 4200 tataccaaaa tcactatttt ggagaattag gcaaatcagg ttcttcttcc tccatgattc 4260 tcataagact ccaaagatgc ggcgcttgta caactggtat gtgaaaaatc tgttggaaaa 4320 aattatttta ttgccaactg gagaagtttg ccaggtcaag aaaggaaatc caagtggtca 4380 gttttcaaca actgtggata ataatatgat caatgtctgg ctaacaacat ttgaggtttc 4440 atacctattt ttcaaacagc gtggtagact gccaacagag aaagagctgc aagagaactg 4500 ctccatgata tgctacgggg atgacagact tctttccatc cgtaaagggt ttgttgagta 4560 cgaacctgat acagtcattg atatgtacaa aaacatcttt ggaatgtggg tgaaaagaaa 4620 caacatcaaa atccaagata cacctgaagg gctctctttt tgtgggctta caatagtaaa 4680 atcaagtact ggtgcatatg ttggtgttcc caatgtgaac aaaatactgt caactttgga 4740 aaatccagta cgtaggctac cagatgttga gtctctttgg ggtaaattgg tttccctgcg 4800 catattgtgt gaaaatgctc ccagcaatgt taaacacttt cttgatgagc agattagcaa 4860 tgttgaggag ttcgccgcca gagaaaacat acaacttcct gaggtcgggc ccgacttcta 4920 ttccagaata tggtgagagg aggaccgaaa gaagatggcg gcgatggccg acaaggtcgt 4980 tgtcaagaag acaactacaa ggcgcagggg caggagtaat tcccgctccc gtagcaggag 5040 taggagcagg agcagaacta aaaagacagt caaaattatt gagaaaaagc cagaaaaatc 5100 catcctaaag aaaattgatc aggctgaaag aagagatgca aaacagctta ggcggattcg 5160 taagaaagtg cagggaccgc cagtaaattc caggatgaca acagtagtca cacttggtca 5220 gataacaggc aataaagaca acaccctaga gcggaaacac aagtgctttc tgaatccgct 5280 gttgatgaag agtcaggaaa ctggtcaaac tgcaacaccc ttatctgtta gggcatccca 5340 atataatctg tggaagctat ccagactcca tgtcagactt ataccccttg caggaaaagc 5400 gaatattttg gggtcagtgg tgttcttaga tcttgaacag gaggcaaaca cagcaggacc 5460 agaatcagta gataccatca aggcaagacc ccatgttgaa gttcccatag ggtcgaaaac 5520 cgtttggaaa gtgcacccta gaagcgctct aggacctaga caggggtggt ggaatgttga 5580 ccctggtgac agcccaactg attctcttgg gccagcactc aacatgtgga cctacctgca 5640 aactgtcaat gcactccaga gcgctggggg cactcaaacg ccttacacca gtgcactttt 5700 tcttgtggag gtcttggtca cttatgagtt ttcaaactat ggcccaaagc ctgcactgtc 5760 tcaaatggta tcagacagct ttccaccagc ctccggttct actgcaacct taaaaaacac 5820 cagtgatggg gctgtagcaa tacaactctc aggcgctatc gcccgaaaga tggaggaggt 5880 tgagcccaag ggtaggcgct caaatgcgca aacatcaggt gtcggtgaag tgttctgggc 5940 agtgtccact gaagtagtca atacagtagc agatgccata ccaggctggg gctggctcct 6000 gaaaggtggc tggtttgtcc ttaggaaaat ctttggggcc gcaaatgacc agaatggcac 6060 ttacttgata tactcttcag tggcagatgc acaaggtgac aacaggatat acacatcagt 6120 gaaacagaca cagttgacat caagcaggat caacctcgtc caactcaccc agcccaatgt 6180 gaaccaagca gcagtaggtg gcagtgttgg tgcggcaaac tccatctatt tgccactacc 6240 acaagcagat gaccaataca caccctactt tgtctataat tttcaagggg aaagggtgtc 6300 aaccaccgag actggggtat tttgtctggc agccatacca gctgcgacta catctagtag 6360 gtataataat cagatcacca ctccatcaat tggctacagg aatgctagtg gtacaggaac 6420 atcattccta ctagatgctg catcatggtg gaatatattg gatgtaactc agactggagt 6480 gctttttgga caaccaagat tgggtgttgg tgtcatgcag acaatgaaga ctctcaaaca 6540 gcatatcaag gattacacag agcctgcaat acagaaatat tatcctggaa caactaacct 6600 tgatgagcag ttgaagcaga gattgaacct ggcagagggt gacccggtca tctcaatggg 6660 ggacacaaac ggtaggaggg ctgcactctt ttataggact agtgatgaaa aatatatttt 6720 atttttctca accacagaag atccaggggc acagtatcaa aatctgaaaa tgttgtactt 6780 ctggaactgg tcctattctg acacaaaaca gcaatttttg gaccacctta gaacagtgca 6840 gtttgcaaat ttggatgaca gccagccagc cccctatgat agtgatgatg atgacctttc 6900 tgatgtaaca tcactttttg agcaggctga tttgggggat gagacagact tcaaatttaa 6960 tatgtccatc caaacctcca aacatcttga ggaggagaaa aattactgga aaaaccagtg 7020 tgagaggatg atgatggaga aggccctttc gggcacctca cagcctcttg tccggtttga 7080 gaaagctgga cctagggcag accaatcttc tgccagtggt cattcttgaa tggccacact 7140 ttctctgcgg tggaaatgga aatcaccatt ccacctaaga tgattagccg atccaacgga 7200 aatcacccgt tgggtggtgc gcggtttacg catcgggaaa tcaacccggt gtattacccg 7260 cacttccggc tcaacagttt tttaaaactg atataaattt atgaaaattt tattagcatt 7320 ttaagaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa 7355 //