ID   AF198103; SV 1; linear; genomic RNA; STD; VRL; 2203 BP.
XX
AC   AF198103;
XX
DT   09-APR-2002 (Rel. 71, Created)
DT   29-MAY-2003 (Rel. 75, Last updated, Version 2)
XX
DE   Cucumber mosaic virus segment 3, complete sequence.
XX
KW   .
XX
OS   Cucumber mosaic virus (cucumber mosaic cucumovirus)
OC   Viruses; Riboviria; Bromoviridae; Cucumovirus.
XX
RN   [1]
RP   1-2203
RA   Yang R., Jones M.G.K., Dwyer G.I.;
RT   ;
RL   Submitted (25-OCT-1999) to the INSDC.
RL   WA State Agricultural Biotechnology Center, Murdoch University, South
RL   Street, Murdoch, WA 6150, Australia
XX
DR   MD5; a5bf60fe4b565ac6c96187f8354b3ec0.
DR   EuropePMC; PMC136033; 11884564.
DR   EuropePMC; PMC3550734; 23637513.
DR   EuropePMC; PMC3650197; 24426254.
DR   EuropePMC; PMC4908998; 27366772.
DR   RFAM; RF01084; TLS-PK3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2203
FT                   /organism="Cucumber mosaic virus"
FT                   /segment="3"
FT                   /isolate="LY"
FT                   /mol_type="genomic RNA"
FT                   /note="originally found infecting Lupinus angustifolius
FT                   subgroup: II"
FT                   /db_xref="taxon:12305"
FT   CDS             97..936
FT                   /codon_start=1
FT                   /gene="3a"
FT                   /product="movement protein"
FT                   /note="Orf3a; MP"
FT                   /db_xref="InterPro:IPR000603"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QVF7"
FT                   /protein_id="AAM10539.1"
FT                   /translation="MAFQGTSRTLTQQSSAASSDDLQKILFSPDAIKKMATECDLGRHH
FT                   WMRADNAISVRPLVPQVTSNNLLSFFKSGYDAGELRSKGYMSVPQVLCAVTRTVSTDAE
FT                   GSLKIYLADLGDKELSPIDGQCVTLHNHELPALISFQHTYDCPMELVGNRHRCFAVVVE
FT                   RHGYIGYGGTTASVCSNWQAQFSSKNNNYTHAAAGKTLVLPYNRLAEHSKPSAVARLLK
FT                   SQLNNVSSSRYLLPNVALNQNASGHESEILNESPPIAIGSPSASRNNSFRSQVVNGL"
FT   CDS             1225..1881
FT                   /codon_start=1
FT                   /gene="3b"
FT                   /product="coat protein"
FT                   /note="Orf3b; CP"
FT                   /db_xref="GOA:Q8QVF6"
FT                   /db_xref="InterPro:IPR000247"
FT                   /db_xref="InterPro:IPR023800"
FT                   /db_xref="InterPro:IPR037137"
FT                   /db_xref="UniProtKB/TrEMBL:Q8QVF6"
FT                   /protein_id="AAM10540.1"
FT                   /translation="MDKSGSPNASRTSRRRRPRRGSRSASGADAGLRALTQQMLRLNKT
FT                   LAIGRPTLNHPTFVGRESCKPGYTFTSITLKPPEIEKGSYFGRRLSLPDSVTDYDKKLV
FT                   SRIQIRINPLPKFDSTVWVTVRKVPSSSDLSVAAISAMFGDGNSPVLVYQYAASGVQAN
FT                   NKLLYDLSEMRADIGDMRKYAVLVYSKDDKLEKDEIVLHVDVEHQRIPISRMLPT"
XX
SQ   Sequence 2203 BP; 501 A; 513 C; 524 G; 665 T; 0 other;
     gtaatcttac cactttcttt cacgtcgtgt cgcgtcagtc cacgctgtgt gtgtgcgtgt        60
     gttagttagt gtgtcgtgtt tagattaccg aaggttatgg ctttccaagg taccagtagg       120
     acgttaactc aacagtcctc ggcggcgtcg tctgacgact tacagaagat attattcagc       180
     cccgatgcca tcaagaagat ggctactgag tgtgacctag gtcgacatca ttggatgcgc       240
     gcggataacg ccatctctgt cagacctctc gttccccaag taaccagtaa caatttattg       300
     tctttcttta aatctgggta tgatgccggt gaattgcgct ctaaaggcta tatgagcgtt       360
     cctcaagtgc tgtgtgccgt taccaggacg gtttctacgg atgctgaggg ttctttgaaa       420
     atttatttgg ctgacctagg tgataaagaa ttatccccaa ttgatgggca atgtgttact       480
     ttacataatc atgagctccc tgctttgata tctttccaac atacctacga ttgccccatg       540
     gaattagttg gcaatcggca tcgatgtttc gcggtagtcg ttgagagaca tggttatatt       600
     ggttacggtg gtaccactgc tagcgtgtgt agtaactggc aagctcagtt ttcttcaaag       660
     aataataatt acacacacgc cgctgctggt aagactcttg tgttgcctta caacagatta       720
     gctgagcatt cgaaaccgtc agccgtcgct cgcctgttga agtcgcagtt aaacaacgtt       780
     agctcatcgc gctatctttt gccgaacgtt gctcttaatc aaaatgcgtc tgggcacgag       840
     tccgagattt taaacgaaag ccctcccatc gctataggga gtccgtccgc gtcccgtaac       900
     aatagcttca gatcgcaggt ggttaacggt ctttagtgtt ttgttacgtt gtacctatgt       960
     atatatatac tacgtttatc ttccgtatgt aaatacatgt gagtctatag tcccgtgtga      1020
     gttgtaacgg tagacatctg tgacgcgaag ccgcttgaag atttcccatc tggggttagt      1080
     aagtccacgt cacagtttta aggttcaatt ccttttgctc cctgttgggc ccccttactt      1140
     tctcatggat gcttctccgc gagttagcgt ttagttgttc acctgagtcg tgtttgtctt      1200
     tgtattttgc gtcttaatgt gcctatggac aaatctggat ctcccaatgc tagtagaacc      1260
     tcccggcgtc gtcgcccgcg tagaggttct cggtccgctt ctggtgcgga tgcagggttg      1320
     cgtgctttga ctcagcagat gctgagactc aataaaaccc tcgccattgg tcgtcccact      1380
     cttaaccacc caaccttcgt gggtagagaa agttgtaaac ccggttacac tttcacatct      1440
     attaccctga aaccgcctga aattgagaaa ggttcatatt ttggtagaag gttgtctttg      1500
     ccagattcag tcacggacta tgataagaag cttgtttcgc gcattcaaat caggattaat      1560
     cctttgccga aatttgattc taccgtgtgg gttacagttc ggaaagtacc ttcatcatcc      1620
     gatctttccg tcgccgccat ctctgctatg tttggcgatg gtaattcacc ggttttggtt      1680
     tatcagtatg ctgcgtccgg agttcaggcc aacaataagt tactttatga cctgtccgag      1740
     atgcgtgctg atatcggcga catgcgtaag tacgccgtcc tggtttattc gaaagacgac      1800
     aaactagaga aggatgagat tgtacttcat gtcgacgtcg agcatcaacg aattcctatc      1860
     tcacggatgc tcccgactta gtccgtgtgt ttaccggcgt ccgaagacgt taaactacac      1920
     tctcaatcgc gagtgctgag ttggtagtat tgctttaaac tgcctgaggt ccctaaacgt      1980
     gttgttgcgc ggggaacggg ttgtccatcc agcttacggc taaaatggtc agtcgtgtct      2040
     ttcacacgcc gatgtcttac aaggtgtcga ggtacccata gaaatcatct cctagatttc      2100
     ttcggaaggg cttcgtgaga agctcgtgca cggtaataca ctgatattac caagagtgcg      2160
     ggtatcgcct gtggttttcc acaggttctc cataaggaga cca                        2203
//