ID AF192772; SV 1; linear; genomic RNA; STD; VRL; 4003 BP. XX AC AF192772; XX DT 14-DEC-1999 (Rel. 62, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Carnation mottle virus, complete genome. XX KW . XX OS Carnation mottle virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Alphacarmovirus. XX RN [1] RP 1-4003 RA Zhang A.P., Yue Y., Ye R., Zhu H.Q., Xu L., Yu S.Q.; RT "Infectivity of full-length cDNA of carnation mottle virus"; RL Chin. Sci. Bull. 0:0(1999). XX RN [2] RP 1-4003 RA Zhang A.P., Yue Y., Ye R., Zhu H.Q., Xu L., Yu S.Q.; RT ; RL Submitted (07-OCT-1999) to the INSDC. RL Microbiology, Fudan University, 220 Handan Road, Shanghai 200433, China XX DR MD5; 51a6c1bf9260bacdc8f8d75393ca965b. DR GOA; P0C777. DR GOA; P0C778. DR InterPro; IPR007982; Tombusvirus_movement. DR UniProtKB/Swiss-Prot; P0C777; MP1_CARMS. DR UniProtKB/Swiss-Prot; P0C778; MP2_CARMS. XX FH Key Location/Qualifiers FH FT source 1..4003 FT /organism="Carnation mottle virus" FT /host="Dinnthus caryophyllus" FT /strain="shanghai" FT /mol_type="genomic RNA" FT /country="China:Shanghai" FT /db_xref="taxon:11986" FT CDS 70..2361 FT /codon_start=1 FT /transl_except=(pos:805..807,aa:OTHER) FT /product="polymerase-associated protein" FT /note="reads through stop codon" FT /db_xref="GOA:Q9J5U7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q9J5U7" FT /protein_id="AAF15525.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYARKIAMASILNRKGWCWRLMVNPLDR FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPRERKL FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG FT FASNGMLRYTKEGCRMIGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPIVQEFYQKYVETAGNVKENKNITEKSSS FT GFFMMADRAKRGYSAVSEMCRFSFYQAFGITPDQQIALEGEIRSLTIDTNVGPQCEAAD FT SLWILNRKYQ" FT CDS 70..807 FT /codon_start=1 FT /product="polymerase-associated protein" FT /db_xref="GOA:Q9J5U7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q9J5U7" FT /protein_id="AAF15524.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYARKIAMASILNRKGWCWRLMVNPLDR FT ARWWEMWCVVNGFDSNKPVTFPK" FT CDS 70..2679 FT /codon_start=1 FT /transl_except=(pos:805..807,aa:OTHER) FT /transl_except=(pos:2359..2361,aa:OTHER) FT /product="polymerase-associated protein" FT /note="reads through stop codon" FT /db_xref="GOA:Q9J5U7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q9J5U7" FT /protein_id="AAF15527.1" FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR FT GARRIVSSGGRCLIVQSPYGNPNQGLIRGEDEEIDNVEESTPEELTQLIEVKAEVDGKE FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYARKIAMASILNRKGWCWRLMVNPLDR FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPPRERKL FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG FT FASNGMLRYTKEGCRMIGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPIVQEFYQKYVETAGNVKENKNITEKSSS FT GFFMMADRAKRGYSAVSEMCRFSFYQAFGITPDQQIALEGEIRSLTIDTNVGPQCEAAD FT SLWILNRKYQXLRSKCSLGIEENKRHVDRWPRMPSANLHPIVLTGVIGLMLLIRLRCTF FT TSTFSLPPLVTLNQIIALSFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK" FT CDS 2669..3715 FT /codon_start=1 FT /gene="cp" FT /product="p38" FT /note="coat protein" FT /db_xref="GOA:Q9Q6X7" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR013669" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q9Q6X7" FT /protein_id="AAF15526.1" FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE FT MLAGYTPAILAFTPRRPRMTNSPPRTSRNSPGQAGKSMTMSKTELLCTVKGTTGVIPSF FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRLVLSTYGFD FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK FT WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQMLKITKTSAEQP FT LKVVVYRM" XX SQ Sequence 4003 BP; 1134 A; 862 C; 1091 G; 916 T; 0 other; gggtaagctg gcgggcaaac ctacactcta tcttacttac attatatatc ctaaccatct 60 gctttcacta tgggattacc cagtctacta gtggaaggcg ttattgggtg cactctagtt 120 ggtggtttag tggctgtggg tagcgcagcg ctggccgtca gggcgaccat cggagtagtg 180 gaattcaata gggagtgtgt gcgtggggcg aggaggatcg tatctagcgg tggaaggtgc 240 ttaatagtcc aatcccctta tggtaatcct aaccaaggat tgataagagg tgaggatgaa 300 gaaattgata atgtggaaga gtcgactccg gaggagctaa ctcagttgat cgaggttaag 360 gcggaagtgg atgggaagga ggtggttgtc tccaagaagc gtgtggtgaa caggcacttg 420 agacaacgat tcgttcgctc cattgccatc gaagccaaaa atcactttgg tggtgacatc 480 agtcccagca aggctaacta cctttctgtt tccaagtttt tgacggggaa atgcaaggag 540 aggcatgttg tgcccgctca cactagagat tgtgtgagcg ctgccatggt actggtgttc 600 acccctgacg tccacgagat caggatgatg gcagggttgg catctgatgc agcgtacgcg 660 aggaaaatcg caatggcaag catactgaac aggaaagggt ggtgttggag gctaatggta 720 aatccattgg atagggcaag atggtgggaa atgtggtgcg tcgtaaacgg gtttgactcc 780 aacaaacccg tcacctttcc caaatagggg ggcctgttct acctcaatgg tgtggagacg 840 aaaattcgtc gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctccaaga 900 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatacag ggtccacaac 960 cattcgtacg caaacctcag acgagggctc cttgagagag tcttctatgt tgagcgcaac 1020 aaggagctag tcagctgtcc gcaacctgaa cccggcagct ttaaagagat gggatacctg 1080 cgacgcaggt tccatagagt gtgtggcaat catacccgga tctctgccaa tgatttggta 1140 gattgttatc agggcaggaa gcgcacaatt tatgagaatg cagcagcgtc cctacttgat 1200 agagctatcg agaggaagga tggcgatctc aagaccttta taaaggcgga gaaattcaac 1260 gtaaatctga aaagtgatcc tgctcctcgg gtcatacagc ccaggagccc tcgctacaat 1320 gtggagttgg gccggtactt aaagaagtat gaacaccatg cttacaaagc cctggacaag 1380 atctgggggg ggccaacggt catgaaagga tacactacag aggaggtagc acagcacatt 1440 tggagcgcat ggaatcaatt ccagacacct gtagccatcg gatttgacat gtcaagattt 1500 gatcagcacg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt ggcctgtttt 1560 gaaggggacg ctcacctcgc caatttgctt aagatgcaac tggtgaatca tggcgtaggt 1620 tttgcgagca atggaatgtt gcgatacacc aaggaagggt gcagaatgat cggagacatg 1680 aacactgcct tgggcaactg tttgttagcg tgtcttatca ccaaacactt aatgaaaatc 1740 agaagcagac tgatcaacaa tggggatgac tgcgtgctta tttgcgaaag aacagacatc 1800 gactacgtcg tgagcaatct aacgacggga tggagtcgat ttggattcaa ttgcatagca 1860 gaagaaccag tgtacgaaat ggaaaagatc agattctgcc agatggcacc ggtgtttgat 1920 ggagcaggct ggctgatggt cagggaccca ttggtgagca tgagtaaaga ttctcactcc 1980 ttggtacact ggaacaacga aacaaacgca aaacaatggc taaaatcagt aggaatgtgc 2040 ggactgcgga ttgccggggg ggttccgatt gtgcaagagt tctaccaaaa atacgttgaa 2100 acagccggaa atgtgaaaga gaacaaaaat atcacagaga aaagtagttc tgggttcttt 2160 atgatggcgg atcgcgctaa gcggggctat tctgcagtgt ctgagatgtg ccgattcagt 2220 ttttaccagg cattcggtat tacaccagac cagcagatcg cgttggaggg ggagattaga 2280 tctctcacca tcgacaccaa tgtggggccc cagtgtgaag cggcagattc actatggata 2340 ttgaaccgga agtaccagta gttgagaagc aaatgctcgc tgggaataga ggaaaacaaa 2400 agacacgtag atcggtggcc aaggatgcca tccgcaaacc tgcatccgat agtactaacg 2460 ggggtaattg ggttaatgtt gctgataaga ttgaggtgca cattcacttc aacttttagt 2520 ttgcccccgt tggtaacctt aaatcagata atagcgttgt cattttgtgg tcttctatta 2580 aacagcatct ctcgggcaga aagagcttgc tattacaact actctgttga cagttctaaa 2640 caacaacaca tttcgataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa 2700 tcccactgtg caaacattgg cgcagaaggg ggataagtta gccgtgaagt tggtgacaag 2760 agggtgggcc tctctgagta cgaaccagaa gaggagagct gaaatgcttg ctggatacac 2820 tccagcgatc ctagccttca caccccgacg accacggatg acaaactctc ctccaagaac 2880 cagtaggaat tcaccaggac aagctggaaa gtccatgacg atgagtaaga ccgaactgct 2940 atgcaccgtc aaaggtacca caggtgttat cccaagcttt gaagactggg tcgtttcccc 3000 ccgaaacgta gccgttttcc cccaactctc gctgctggcg accaacttca ataagtaccg 3060 catcactgcg cttactgtga agtactcacc agcgtgtagc ttcgagacca atgggagggt 3120 ggctctggga ttcaacgatg acgcttcgga cacaccacca accaccaagg ttggatttta 3180 cgatctgggc aaacatgtgg aaactgctgc acagacagct aaagatctag tgataccagt 3240 agacggcaaa acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt 3300 tggacgatta gtcttgtcaa catacgggtt tgacaaggca gatactgtgg tgggcgagtt 3360 gtttatacag tacacgattg tgctgagtga cccaaccaag acggccaaaa tttcacaggc 3420 aagcaacgat aaggtgtcgg atggaccaac gtatgtggtc ccttcggtta acggcaacga 3480 gctgcaacta agagtggtag ccgcagggaa atggtgcatt atagtgcggg gcacggttga 3540 aggtggcttc accaaaccca cacttattgg accaggaatc agcggtgatg tggactatga 3600 aagtgccaga cctatcgcca tttgcgagtt ggtgacacaa atggagggcc agatgttgaa 3660 aatcaccaag acctcagcag aacaaccact caaagtggtt gtttatagga tgtgaatgca 3720 gaagaaaagt ttgatagaca cacacggcgg gacgtgttgc tagagctgcc actctgcccg 3780 agatggatcg atattaacca tctttggcaa cagcgtgtgt gatcaaccaa acctagtaac 3840 tgcgtagcat ccgactgtaa cctgttctct gctgaatgcg agggtggcct cgtgatccca 3900 aaccataaaa gaaaccaact tgttggtgga agggctagga agtaggatca accactgttt 3960 attaattagg ggtaagagta ttcactgtac tctttccccg ccc 4003 //