ID AF190123; SV 1; linear; genomic DNA; STD; VRL; 7767 BP. XX AC AF190123; XX DT 15-NOV-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Tobacco vein-clearing virus, complete genome. XX KW . XX OS Tobacco vein clearing virus OC Viruses; Ortervirales; Caulimoviridae; Solendovirus. XX RN [1] RP 1-7767 RX PUBMED; 10811941. RA Lockhart B.E., Menke J., Dahal G., Olszewski N.E.; RT "Characterization and genomic analysis of tobacco vein clearing virus, a RT plant pararetrovirus that is transmitted vertically and related to RT sequences integrated in the host genome"; RL J. Gen. Virol. 81(Pt 6):1579-1585(2000). XX RN [2] RP 1-7767 RA Lockhart B.E., Menke J., Dahal G., Olszewski N.; RT ; RL Submitted (25-SEP-1999) to the INSDC. RL Plant Biology, University of Minnesota, 220 Biological Sciences Center, St. RL Paul, MN 55108, USA XX DR MD5; 3219881365ebd296f9ff6dec070b199c. XX FH Key Location/Qualifiers FH FT source 1..7767 FT /organism="Tobacco vein clearing virus" FT /host="Nicotiana edwardsonii" FT /mol_type="genomic DNA" FT /db_xref="taxon:107324" FT CDS 416..2155 FT /codon_start=1 FT /product="putative coat protein" FT /note="ORF 1" FT /db_xref="GOA:Q9QD06" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:Q9QD06" FT /protein_id="AAF08287.1" FT /translation="MNKEEFAIDEKTYENQDGLKIKIIFSNLGRRYKKIGDQIYLMIEK FT ETARLEDSLTAMTRIIKENEEIDKKREIEIIRNQANKEIQQLEETKNTKIIALEKELNM FT LKLLYENKQREKDKEIELTDEINKFKQKLQPEENLRIEEIDNNIDDQKSELSEISETYT FT EILENIEKTKNLEINTGDVNMDEKPSTSGIKNPKELNPSYYTVSYEQSDRNNTLWNSRL FT NKKWTPKPIHEQYNFLDLDCVEDINKTIQLWIGYISKQLIDNKIGITETPGYIERTLIG FT TVKLWLHNLTKESIDTLRSNKKFNGDMATTSMEILYKYEIAIRNEFSSMTTETEEQHKE FT KQINRNLMTKLAICNMCYIDEYTCAFREYYYKGTYNTEEGREIRKLYFTKLPEPFSSKI FT IKDWNEAGLTDTLGARIKFLQQWFVQLCEKYKEEIKMEKILIKNLKCCKNKTAPQFGCT FT DKYNKKWKTKKYKKHRSKYKYKKPRKRYYVKNYQAKKPFRPKKKLTECTCYNCGKLGHI FT AKDCKAPKNPKKKQITEIIIDDEEYMQMEYIDYELDSEDSIYEISDSDDEIDSEITEEE FT DEI" FT CDS 2155..3414 FT /codon_start=1 FT /product="putative cell-to-cell movement protein" FT /note="ORF 2" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9QD05" FT /protein_id="AAF08288.1" FT /translation="MTEKEIKVVAREEYQNEESSEQKIIFDNNIFEQIKGKELDLSVEK FT IFEVPTIKNWFKRQKEEYYVVSQKEHIIDCKYTGGKAKIPIINKRIINKEIQDIKAKNP FT IKYVHLGGTEILIKACFREGIDTPIEIYLADDRIIQPIEKSIISAIKGNLIYQKFKFII FT SANYSVALNDRNIDKSLVLYWKMSGIELAPGSKVFTARCKNLYVLTTKHKIAAKNKINK FT IKIENPFERIVTVIDNNEYSYKEIDMEEDLEIVKERLSTSSIPKQLTHETPTSSRISTS FT KREYIIPKNLARNTIEEIKPYHYYITGIMEQRKYQILINTGQEENYIIRELVAESEIIT FT TEQLCPELPKELIINEEITEKEIIIGGIPLIIQFKIYQGNENITLGIKWLERLKPYNLE FT DKQLTITYKNKKVIIKRTEE" FT CDS 3411..5318 FT /codon_start=1 FT /product="polyprotein" FT /note="ORF 3; contains aspartic protease, reverse FT transcriptase and RNAse H" FT /db_xref="GOA:Q9QD04" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041577" FT /db_xref="UniProtKB/TrEMBL:Q9QD04" FT /protein_id="AAF08289.1" FT /translation="MKIYILAKIIVEGYYNRYYTPMIDTGAEANICKYNCLPTDKWEKL FT KTPMVVTGFNNEGSMINYKARNVKIQIWDKILTIEEIYNFEFTTKDMLLGMPFLEKLYP FT HIITKTHWWFTTPCKNKVGAKRVNNKQRKTTEWIRGSEKITQKLENINKNTTTQLEIII FT FTIDKVKIIQKKLEKLYNDNPLQGWEKHKTKVKIELIEENSIITQKPLKYNFNDLTEFK FT IHIKDLLDNKYIQESNSKHTSPAFIVNKHSEQKRGKSRMVIDYRNLNAKTKTYNYPIPN FT KILKIRQIQGYNYFSKFDCKSGFYHLKLEDESKKLTAFTVPQGFYEWNVLPFGYKNAPG FT RYQHFMDNYFNQLENCIVYIDDILLYSRTQDEHIKLLEKFAHIIENSGISLSKTKAEIM FT KNQIEFLGIQIDKNGIKMQTHIVQKIINLDENIDTKKKLQSFLGIVNQVREYIPKLAEN FT LKPLQKKLKKDVEYSFDEKDKEQIKKIKILCKKLPKLYFPDENKKFTYIVETDSSNYSY FT GGVLKYRYNKEKIEHHCRYYSGSYTEPQEKWEINRKELFALYKCLLAFEPYIVYTRFIV FT RTDNTQVKWWITRKVQDSVTTKEIRRLVLNILNFTFTIEIINTNKNVVADYLSRQSYPN FT " FT CDS 5275..6528 FT /codon_start=1 FT /product="putative transactivator factor" FT /note="ORF 4" FT /db_xref="UniProtKB/TrEMBL:Q9QD03" FT /protein_id="AAF08290.1" FT /translation="MLLQIIYQDKATQTDPDNTMENLLLAMTTLCKKVESMDEEIQIMR FT KTASSQQHDSKNAELRQSEVSKIPELEGDVEKHLKTHNGLLNTVAGSSTTSSSSARKKE FT DIKPRYTNINMNNLFSKPFVQRNTQDTQKEIFLPPQVNTYKESLNQTKKTYNHITRTYI FT DNIHKIQNFLNKNPRSQSTQNPNEDYITHHLTGYNKLIALPNTSAKLVATCYNYGLLDT FT VYTQTGQEIANIPELYKAFMQYKRITKGTLFYVRFYSATAEILYEEIKPIIQVIKIGLT FT REMIIPEKIEEQEEIEKVNIPEFYANKRIIGISTILNELANNYLNQNAIWSYYSREQTM FT IYSNCRDIREADMEELRQWVLSLLKPEQPTTTRAIRRNFISPDLLTRYCKLISHKYPDH FT LCSKCKGEDNIVPDVQLE" XX SQ Sequence 7767 BP; 3729 A; 959 C; 1150 G; 1929 T; 0 other; tggtatcaga gccagtacac aaaaagaaac acatcaagtt aataaagaag accaaataag 60 aaacagtgta agaaaaacaa acaagaaact aagaaagtta tactctgaat ataaaaaatt 120 acacataaca aagatagata ataataggtt agaacaacta atagatatca tatctaatac 180 agaatataaa tatatccagt atttgaaaaa acagtatgaa caaggaagaa tataaacaac 240 aactttttga aaaaattaca gaaaaaagac aagaattacg acatagacaa gataggctta 300 agaataatat atttgctgga acttgccaga aatctttact agttcaaaga aaaattatat 360 taaatttaca aatacaaata caacagtttg aatatatact ccaacataac ctataatgaa 420 taaagaagaa tttgcgatag atgaaaagac atatgaaaac caagatggat tgaaaataaa 480 gataatattt tcaaatctag gtagaagata taaaaaaata ggagaccaaa tatacctaat 540 gatagaaaaa gaaacagcaa gattagaaga tagcctgaca gccatgacaa gaataattaa 600 ggaaaatgaa gaaattgata aaaagaggga aattgaaatt atcagaaatc aagcaaataa 660 ggaaatacaa caattggaag aaaccaagaa tacaaaaatt atagcattag aaaaagaatt 720 aaatatgtta aaattactat atgaaaataa acaaagagag aaagataaag aaatagaatt 780 aacggatgag ataaataaat tcaaacaaaa attacaacca gaagaaaacc tcagaattga 840 agaaatagat aataatatag atgaccaaaa gtcagagcta agcgaaataa gtgaaacata 900 tacagaaatt ttagaaaata tagaaaaaac aaaaaattta gaaataaata caggggatgt 960 aaatatggat gaaaaaccta gcacatcagg tataaagaat ccaaaagaat taaacccaag 1020 ttattataca gttagttatg aacaatctga tagaaataat acactatgga atagtagact 1080 aaataaaaaa tggacaccaa aaccaataca tgagcaatat aactttttag atttagattg 1140 tgtagaggat ataaataaaa caatccaact atggatagga tatatatcta aacaattaat 1200 agataataaa ataggaataa cagaaacacc aggatatata gaaaggacac ttatagggac 1260 agtaaaatta tggttacata atttaacaaa agaaagtata gatactttaa gaagtaataa 1320 aaaatttaat ggtgacatgg caacaacgag tatggaaata ttatacaaat atgaaatagc 1380 cataagaaac gaatttagta gtatgactac agaaacagaa gaacaacata aggaaaaaca 1440 aataaataga aacctaatga caaaattagc aatatgtaat atgtgctata tagatgaata 1500 tacttgtgca tttagagaat attattataa aggaacatat aatacagaag aaggcagaga 1560 aataagaaaa ttatatttca caaaattacc agaacctttt agttcaaaaa taataaagga 1620 ttggaatgaa gcaggattaa cagatacttt aggagctagg ataaaatttt tacaacaatg 1680 gtttgtacaa ttatgtgaga aatataaaga agaaataaaa atggaaaaaa tattaataaa 1740 aaacttaaaa tgttgtaaaa ataaaacagc accacaattt ggatgtacag ataaatataa 1800 caaaaaatgg aaaacaaaga aatataaaaa acataggtca aagtataaat ataaaaaacc 1860 aagaaaaaga tattatgtaa aaaattatca ggctaaaaaa ccatttagac caaaaaagaa 1920 actaacagaa tgtacttgtt ataactgtgg aaaattagga catatagcta aagactgcaa 1980 agcacctaaa aacccaaaga aaaaacaaat aactgaaatt ataattgatg atgaagaata 2040 tatgcagatg gaatatatag attatgaact agatagtgaa gacagtatat atgaaatatc 2100 agattcagat gatgagatag atagtgaaat aactgaagaa gaagatgaaa tctaatgact 2160 gaaaaagaaa taaaagtagt agcacgagaa gaatatcaaa atgaagaatc ctcagaacaa 2220 aaaattatat ttgataataa tatatttgaa caaataaaag gaaaagaatt agaccttagt 2280 gtcgaaaaaa tatttgaagt acctacgata aaaaattggt tcaaaagaca aaaagaagaa 2340 tactacgtag ttagccaaaa agaacatata attgattgca aatatacagg aggtaaggcc 2400 aaaataccaa taataaacaa aagaataata aataaagaaa tacaagatat aaaggcaaaa 2460 aacccaatta agtatgtaca cttaggagga actgaaatat taataaaagc atgttttaga 2520 gaaggaatag atacccctat agaaatatat ctagcagatg atagaataat ccaacctata 2580 gaaaaaagca taataagtgc aataaaagga aatcttatat atcaaaagtt taaatttata 2640 ataagcgcca actattcagt agcactaaat gatagaaata tagataaatc attagtatta 2700 tactggaaga tgtcaggaat agagttagca cccggaagta aagtatttac agccagatgt 2760 aagaacctat acgtattaac aacaaaacat aaaatagcag cgaaaaataa aattaataaa 2820 atcaaaatag aaaacccgtt tgaaagaata gttacagtta ttgacaataa tgaatatagc 2880 tataaagaaa ttgacatgga agaagattta gaaatagtaa aagaaagatt aagtacatca 2940 agtataccaa aacaattaac tcatgaaaca ccaacatcat caagaataag tacatcgaaa 3000 agagaatata taatcccaaa aaatttagcc agaaacacaa tagaagaaat aaagccatat 3060 cattattata taactggaat tatggaacaa cgaaaatatc aaatattaat aaacacagga 3120 caggaagaaa attatatcat aagagaatta gtagcagaaa gtgaaataat aactactgaa 3180 caactatgcc ctgaattacc taaagaatta ataataaatg aagaaataac agaaaaagaa 3240 ataattattg gaggaatacc tctaataata caatttaaaa tatatcaagg aaacgaaaat 3300 attacactag gaataaaatg gttagaaaga ttaaaaccat ataatttaga agataagcaa 3360 ttaactataa catataagaa taaaaaagta ataataaaaa gaacagaaga atgaaaatat 3420 acatacttgc aaaaatcata gtagaaggat attataatag atactataca ccaatgatag 3480 atacaggagc agaagctaat atatgtaaat ataattgttt accaacagat aaatgggaaa 3540 aattaaaaac acctatggta gtaacaggat ttaataatga aggtagtatg attaactaca 3600 aagctagaaa cgtaaaaata caaatatggg ataaaatatt aactatagaa gaaatatata 3660 actttgagtt taccacaaaa gatatgttat taggaatgcc attcttagaa aagttatacc 3720 cacatataat aacaaaaaca cactggtggt ttaccacacc atgtaaaaat aaagtaggag 3780 ctaaaagagt aaataataaa caacgaaaaa ctacagaatg gatacgaggc agtgaaaaga 3840 tcacacaaaa attagaaaat ataaataaaa acacaactac ccaattagaa attatcatat 3900 ttacaataga taaagtaaag ataatccaga aaaaattaga aaaattatat aatgataacc 3960 ctctacaagg atgggagaaa cataaaacaa aagtaaaaat agaactaatt gaagagaata 4020 gtataataac acaaaaacct ctaaaatata actttaatga tttaacagaa tttaaaatac 4080 atataaaaga tttattggat aataaatata tacaagaaag taatagcaaa catacaagtc 4140 cagcatttat agtaaataaa catagtgaac aaaaaagagg aaaaagcagg atggtcatag 4200 actatagaaa tttaaatgca aaaactaaaa catataatta tccaataccc aataaaatat 4260 taaagataag acaaatacaa ggatataatt actttagtaa atttgactgt aagtcaggat 4320 tttatcattt gaaactagag gatgaatcta aaaaattaac agcttttaca gtaccacaag 4380 gattttatga atggaatgtt ttaccatttg gatataaaaa tgcaccagga agataccaac 4440 attttatgga caactatttt aatcaactag aaaattgtat agtatatata gatgatatac 4500 tactatattc aagaacacaa gatgaacata taaaattatt agaaaaattc gcacatatta 4560 tagaaaactc tggtataagc ttaagcaaaa ccaaagcaga aattatgaaa aatcagatag 4620 aatttttagg aatacaaata gataaaaatg gaataaaaat gcaaactcat atagtacaaa 4680 aaataatcaa tcttgatgaa aacattgata caaaaaagaa attacaatca tttctaggaa 4740 tagtaaacca agtaagggaa tatataccta aattagcaga aaacttaaaa cctttacaga 4800 aaaaactaaa aaaggatgta gaatatagtt ttgatgaaaa agataaggaa caaataaaga 4860 aaattaagat attgtgtaaa aaattaccaa aattatactt tccagatgaa aacaaaaaat 4920 ttacctatat tgtagaaaca gattcaagta attatagcta tggaggagtt cttaagtata 4980 gatataataa agaaaaaata gaacatcatt gcagatacta ttcaggatct tatacagaac 5040 cacaagaaaa atgggaaata aatagaaaag aattatttgc attatataaa tgtctattag 5100 catttgaacc atatatagtt tacaccagat ttattgtaag aacagacaat acacaagtaa 5160 aatggtggat aactagaaaa gtacaagatt cagtcacaac aaaagaaata cggagactgg 5220 tattaaatat attaaacttt acatttacaa ttgaaataat taatactaac aagaatgttg 5280 ttgcagatta tttatcaaga caaagctacc caaactgatc cagataatac aatggaaaat 5340 ctactcttgg ccatgactac actttgtaaa aaagtggaaa gtatggatga agagatacaa 5400 ataatgagaa aaacagctag cagtcagcag catgactcaa aaaatgcgga gctaagacaa 5460 tcggaagtct ctaaaattcc agagctagaa ggtgacgttg agaaacacct aaaaactcat 5520 aacggtttgt taaatacagt tgcaggaagc agcacaacta gcagttcatc tgcaaggaaa 5580 aaggaagata ttaaacctag atacactaat ataaatatga acaatttatt ttcaaaacca 5640 ttcgtacaga gaaataccca agatacccag aaagaaatat tcttaccacc acaggtaaat 5700 acctacaaag aaagtttaaa ccaaaccaaa aagacatata accatataac ccgtacctat 5760 atagacaata tacataaaat acagaatttt ttaaataaaa atccaagatc ccaatctacc 5820 caaaatccaa acgaagacta tattacccac catctaacag gatacaataa attgatagct 5880 ttaccaaata caagtgcaaa attagtagcc acctgctaca actacggact actagatact 5940 gtatatacac agacaggaca agagatagcc aatatacctg agttatacaa ggcattcatg 6000 caatataaga ggataactaa agggacatta ttctacgtac gattctattc ggctacagca 6060 gagatactat atgaagagat aaagcctatc atacaagtta tcaaaattgg actcacaagg 6120 gaaatgatca taccagaaaa gatagaagaa caagaagaga tagaaaaagt aaatattcca 6180 gaattctatg ctaacaaaag gataattgga atatctacta tactaaatga actagcaaac 6240 aactatctaa atcagaatgc aatttggagc tattattcaa gggaacagac aatgatatat 6300 tcaaattgca gagatataag agaagcagat atggaagaac taagacagtg ggtcttaagt 6360 cttctaaaac cagaacaacc tacaaccaca agagctataa ggaggaattt catctcccca 6420 gatctgttaa caagatactg caagctaatt agtcacaaat atccagacca cctatgctca 6480 aaatgcaaag gagaagataa cattgttcca gacgtacaac tggaataatt cagatagaag 6540 aaaacgacaa aacaacaaga tatgacagaa agatctactt ttatagattc ctttttcttt 6600 tgtaaagaaa tgttattttg ttttttataa aagtcgtaaa gaatagttta ctttattaaa 6660 gtaagagtca ttcatgaaca gtaaaggtcg ttcatgaata gtaagagtcg tttgtaaata 6720 gtaagagtcg tttgtaaata gtaagagtcg tttgtaaata gtaagagtcg ttagtaagag 6780 tcgtttgtga atagtaagag tcaatttttg tattataaat agcagttcaa atgtgaataa 6840 aaaacaggct gcagttttca agcatccaac aattcctctc tcttctctct aatatatttt 6900 gcagatataa gcatacgaaa gctatggaac aacaaggaga tagcagaaat ctacaaaaac 6960 aggtatatca ttttccaact atgaacagct aaattactat attcctgata atttctatgt 7020 aaattataat tgttcatcat actatagtac tgttataaaa atcatcttga gaaagtttgc 7080 catgataata tgctaatagt aggtaaaccc agactatgcc atcctaatgt tgaaaccggt 7140 aggcagagaa gccgtttagg ggagtaaacg aagttgaagg cgctgttagg gtaattgatc 7200 gaagcagaaa atcatggtag tgaccagaaa agatgactaa aataacttat tataatatga 7260 tgaataagta taatagacat agagattaga aggaatatgt ttagcaaatc atatgaaaaa 7320 tgaatactta cttattagat gatgatacta gttataagtt actcatacta tatatcctaa 7380 aaaatatcga aaatgataca agaagaataa tctatgaaaa actagttact tttgaaatgt 7440 tagaaataat aaatcaaaat tggacagaat taattatacc agatgatata aatatagact 7500 tatatgagtt agacttatat tcagaataat aatgaatcat atataccaac aatattggca 7560 acaaactact gaaagcataa ctttactagg aaatttagta aaaacaaata tagaagagta 7620 tcaaagaacc caagatatac aatatataga atacatattg gaaagcttga aagaaatact 7680 tagattaatt ccgctacaaa aagaatatta tgaaaaagca tttaatttaa ataattaaat 7740 gacaaaagat aagaccaccc cccaatt 7767 //