ID   AF185954; SV 1; linear; genomic RNA; STD; VRL; 1642 BP.
XX
AC   AF185954;
XX
DT   06-OCT-1999 (Rel. 61, Created)
DT   06-OCT-1999 (Rel. 61, Last updated, Version 1)
XX
DE   Cypripedium virus Y isolate CP polyprotein gene, partial cds.
XX
KW   .
XX
OS   Cypripedium virus Y
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1642
RA   Gibbs A., Mackenzie A., Nightingale M., Wilson C., Blanchfield A.,
RA   Kitajima E., Clements M.;
RT   "Viruses of orchids: identification, biology and control";
RL   Unpublished.
XX
RN   [2]
RP   1-1642
RA   Mackenzie A.M., Gibbs A.J.;
RT   ;
RL   Submitted (13-SEP-1999) to the INSDC.
RL   Research School of Biological Sciences, Australian National University,
RL   Biology Place, Canberra, ACT 2601, Australia
XX
DR   MD5; 75c000829065a47c6b1d8b6f847856a0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1642
FT                   /organism="Cypripedium virus Y"
FT                   /host="Cypripedium parviflora pubescens"
FT                   /isolate="CP"
FT                   /mol_type="genomic RNA"
FT                   /country="United Kingdom"
FT                   /note="acronym: CypVY"
FT                   /db_xref="taxon:104389"
FT   CDS             <1..1437
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="NIb polymerase/coat protein"
FT                   /db_xref="GOA:Q9QDL8"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q9QDL8"
FT                   /protein_id="AAF00516.1"
FT                   /translation="GNNSGQPSTVVDNTLMVILAMHYTLLKCGIPSERHDDMCKYYANG
FT                   DDLIIAIHPDYKDLLDNFSDHFSTLGLKYNFDSRHTDKADLWFMSHKSILVDGMYIPKL
FT                   EPERIVSIIQWDRATFPEHRLEAICAAMIESWGYTQLTHEIRKFYKWVLEQAPYNELAR
FT                   EGRAPYVAETALRNLYTSRAPAPSELEIYYAAINEHAAQEQTDVVFHQSGSDKMDAGLA
FT                   RTDKASDGSGNKQAITRQPDRDVNVGTSGGFNVPRTKAISSKLVLPKSKGKVVLNMNHL
FT                   LAYVPSQVDISNTRSTHQQFTTWYEGIKNDYDITDEGMSILMNGLMVWCIENGTSPNIN
FT                   GVWVMMDGEEQVEYPIKPLIDHARPTLRQIMAHFSNVAEAYIEKRNNEKAYMPRYGLQR
FT                   GLNDMSLARYAFDFYEMTSNAPARAREAHMQMKAAALVNATTRLFGLDGNVNGKEEDTE
FT                   RHTVEDVNRHQHYLHGSRNF"
FT   3'UTR           1438..1642
XX
SQ   Sequence 1642 BP; 545 A; 318 C; 383 G; 396 T; 0 other;
     gggaataaca gtgggcagcc atcaacagtg gtagacaaca cactgatggt tatactagcc        60
     atgcactata ccctactgaa atgcggaatc ccatcggagc gacatgatga catgtgcaaa       120
     tactatgcca atggtgacga tttaatcatt gcaatccatc cagattataa agacctgttg       180
     gacaatttct ctgatcactt tagcacacta gggttaaagt ataactttga ctcacgacac       240
     acggataaag cagatctttg gtttatgtcc cataagagta tactagtgga tggtatgtac       300
     ataccaaagc ttgaaccaga acgcattgta tctattattc agtgggatcg tgcaactttc       360
     cctgaacaca ggcttgaagc tatatgtgcg gctatgatag aatcatgggg ctacacacaa       420
     ctcacacatg agataagaaa attttacaag tgggtacttg agcaagcccc gtataacgag       480
     ctagcaaggg aaggaagagc tccatatgtt gctgaaacag cactacggaa tttatataca       540
     agtagagccc cggcccccag tgaacttgaa atctactatg cagctatcaa tgaacatgct       600
     gcgcaagaac aaacagatgt tgtctttcac cagtcagggt ctgataaaat ggatgcaggt       660
     ttggcaagga ctgataaagc aagtgatggc tcagggaata aacaggcaat cacacgacag       720
     ccggatagag atgtgaatgt agggacgagc gggggattca acgtcccacg aactaaggca       780
     atctcatcaa agctagtcct tcccaaaagc aaaggaaagg ttgtcttgaa catgaatcat       840
     ctcttagcat atgtaccgag ccaggtggac atttcgaata caaggtccac gcaccaacaa       900
     ttcaccactt ggtacgaagg cattaagaat gattatgaca ttacagatga aggcatgagc       960
     atattaatga atggactcat ggtgtggtgt atcgagaacg gaacatcacc aaatataaat      1020
     ggagtatggg taatgatgga tggtgaggaa caagtggagt atccaataaa gccactcatc      1080
     gatcatgcca gacccacact tcgccagata atggcccatt tcagtaacgt tgcggaggcg      1140
     tatattgaaa agagaaacaa tgaaaaagcg tacatgccac ggtacggact tcagcgagga      1200
     ttaaacgaca tgagcttagc acgatatgca tttgatttct atgaaatgac ttcaaacgca      1260
     ccagcgcgag cacgtgaagc ccatatgcaa atgaaggcgg ctgcattagt gaatgcaaca      1320
     acgcgtctgt ttggattgga tggaaatgtc aatggaaagg aagaagacac ggagagacac      1380
     acagttgagg atgtgaatag acatcaacat tatctacatg gcagtagaaa tttctgagtg      1440
     ttggtatttt agttaattgt tatataaatt actatgtacc cgttagtatt ttcacctacg      1500
     agggtgagca aatcactcgc agtgagatgt atctcgagag tgagagattc acctttcgag      1560
     cttgcgattt ttgttgtgaa tgtaatgtga tgctatcact atttccgaca tctgaccgta      1620
     agtgagagaa aaaaaaaaaa aa                                               1642
//