ID AF182760; SV 1; linear; genomic RNA; STD; VRL; 7320 BP. XX AC AF182760; XX DT 02-NOV-1999 (Rel. 61, Created) DT 30-DEC-2021 (Rel. 144, Last updated, Version 3) XX DE Cowden I virus, complete genome. XX KW . XX OS Cowden I virus OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Caliciviridae; Sapovirus. XX RN [1] RP 1-7320 RX PUBMED; 10516074. RA Guo M., Chang K.O., Hardy M.E., Zhang Q., Parwani A.V., Saif L.J.; RT "Molecular characterization of a porcine enteric calicivirus genetically RT related to Sapporo-like human caliciviruses"; RL J. Virol. 73(11):9625-9631(1999). XX RN [2] RP 1-7320 RA Guo M., Chang K.O., Hardy M.E., Zhang Q., Parwani A.V., Saif L.J.; RT ; RL Submitted (03-SEP-1999) to the INSDC. RL Food Animal Health Research Program, Department of Veterinary Preventive RL Medicine, Ohio Agricultural Research and Development Center, Ohio State RL University, 1680 Madison Avenue, Wooster, OH 44691, USA XX DR MD5; 7181468276389582c61556df16a39425. DR EuropePMC; PMC113000; 10516074. DR EuropePMC; PMC1143638; 15919882. DR EuropePMC; PMC1317165; 16333083. DR EuropePMC; PMC136553; 12239283. DR EuropePMC; PMC1393212; 16517625. DR EuropePMC; PMC1472167; 16698991. DR EuropePMC; PMC1865854; 17267629. DR EuropePMC; PMC1933329; 17459935. DR EuropePMC; PMC2395209; 18385231. DR EuropePMC; PMC2446860; 18417656. DR EuropePMC; PMC2600344; 18598655. DR EuropePMC; PMC2725984; 17553282. DR EuropePMC; PMC2744225; 19624925. DR EuropePMC; PMC2795755; 19961620. DR EuropePMC; PMC2815582; 19940055. DR EuropePMC; PMC2851512; 18258001. DR EuropePMC; PMC2884469; 20392905. DR EuropePMC; PMC3291391; 16494732. DR EuropePMC; PMC3323275; 15504283. DR EuropePMC; PMC3325917; 22514697. DR EuropePMC; PMC3337238; 22361160. DR EuropePMC; PMC3346393; 22447610. DR EuropePMC; PMC3358050; 22516204. DR EuropePMC; PMC3367643; 16485479. DR EuropePMC; PMC3374439; 16710959. DR EuropePMC; PMC3528410; 23072668. DR EuropePMC; PMC356817; 15004104. DR EuropePMC; PMC3974945; 24699963. DR EuropePMC; PMC4017447; 24834197. DR EuropePMC; PMC4143647; 24662519. DR EuropePMC; PMC416503; 15163740. DR EuropePMC; PMC4498750; 26161646. DR EuropePMC; PMC4719606; 26581980. DR EuropePMC; PMC4881899; 27228126. DR EuropePMC; PMC4928471; 27375966. DR EuropePMC; PMC5035092; 27661997. DR EuropePMC; PMC525163; 15528717. DR EuropePMC; PMC5356244; 28302145. DR EuropePMC; PMC544127; 15650167. DR EuropePMC; PMC553994; 15727685. DR EuropePMC; PMC5866260; 29508188. XX FH Key Location/Qualifiers FH FT source 1..7320 FT /organism="Cowden I virus" FT /strain="Cowden" FT /mol_type="genomic RNA" FT /clone="1" FT /db_xref="taxon:2849715" FT CDS 10..6774 FT /codon_start=1 FT /product="polyprotein" FT /note="nonstructural polyprotein and structural capsid FT protein; orf1" FT /db_xref="GOA:Q9QEJ5" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="PDB:2MXD" FT /db_xref="UniProtKB/Swiss-Prot:Q9QEJ5" FT /protein_id="AAF04560.1" FT /translation="MANCRPLPIGQLPNRIFDTPRLTPGWVWACTSEATFKLEWLQDPV FT VIRPPDVFVAQGVVDDFFRPKRVLQGDPQLIAQVLLGDANGPLVGPVSMQQLTSLLHEV FT SQALSDHKHPLANRYTRASLQRYADTLSNYIPLVDILTGPKDLTPRDVLEQLAAGREWE FT CVPDSALKKVFRDMWQYICEGCDSVYIKLQDVKRKMPHIDTTVLKQFIITLTDTISMAT FT ALDTKTWLAHILGWLKPTCLVMIMQQHVNSPQGWAATLTALAELYYGIMPLTETLGSVA FT SWVTDKFADMATSTWGKFKSWWDSLYTPQAGNDLIILGGVVGLVYFMVFGDAPTQMFTK FT KLMRVCGFITSTVAAIKAAMWIVDYFKQREHEHQVRITLARWAALQEVIKQNRCAGLSE FT VTKLKECCEVLLNEVTELMYKLGASPLAGLIRSTSDVIQTTINELAQLMAYDTQRKPPA FT MVVFGGPPGIGKTRLVEALAKQLGEVSHFTMTVDHYDTYTGNTVAIWDEFDVDSKQAFI FT EATIGIVNCAPYPLNCDRPEAKGRVFTSKYVLATTNCPTPVMPDHPRAMAFWRRITFID FT VTAPTIEQWLVDNPGRKAPTSLFKDDFSHLQCSVRGYTAYDEKGNTLSGKVARARYVSV FT NNLLDLIKEKYNSEAADVKHLWFTVPQAIHKQARDIILGWLRFHSYPNTVADNIPLSEV FT RDPTCFGYVVISDVDPPRHVAEHVAHIEVESILRTDIVGLLREGGGGLFRALKVKSAPR FT NCIINKVMMQAHHTTLQVLTSQEPHPPNLPRPRRLVFVESPIDIISALRHHVGFCTIPG FT IVKLITSGVGLGVENLGNFLQSIAGNVRFPLQSECSLLRTPSGDVLFYTSGQAAVWATP FT ARFPIVTPGEASVGKEVCSESSWWDILKALFSTLVVAFGPIATLVLTAHNLAYLNTREN FT TLSEAKGKNKRGRGARRAIALRDDEYDEWQDIIRDWRKEMTVQQFLDLKERALSGASDP FT DSQRYNAWLELRAKRLSAGAYQHAVVDIIGKSGHRREVIRTQVMRAPREPKGDTYDSEG FT RGYVVPMTAQEKHTGWAVHIGNGRLVTCTHVANMCDRVAEVEFKVAETDRDTCIITAPL FT GHLPSVALGNGPPAFYTTNFHPIRVLDEGSWDTTTTRVTGWRVVINNGTTTAPGDCGQP FT YLNARRQLVGVHAATSTCGVKKLVSRVQTKKTAKATFPWKGLPVTTMPDAGGLPTGTRY FT HRSIAWPKLLPEETHAPAPYGVNDPRHPFSQHQMIANNLQPYINTPVALDQTLLQRAVK FT HTKGYLDQIIGTHRSPNLTYAAAVESMAHDTACGPNLPGRKKDYMTDQGEPIGPLKQML FT EEAWDMAHRGVPRRHEYKLALKDELRPIEKNDQGKKRLLWGCDAGVSMIANAVFKPVTE FT RLVDTVPMHPVAVGICMDSPQIEQMNQALTGRVLYCLDYSKWDSTQNPAVTCASVDILA FT SYAEDTPLSSAAIATLCSPAVGRLDDIGLTVTSGLPSGMPFTSVINSVNHMIYFAMAVL FT EAYEEFKVPYMGNIFDNETIYTYGDDCVYGLTPATASIMPVVVKNLTSYGLVPTAADKS FT QSIEPTDTPVFLKRTFSQTPFGLRALLDETSLARQCYWVKANRTTDLFEPAAVDVDIRK FT NQLEVMLAYASQHPRSVFDKLAGMAEVTASAEGYQLVNVNWANAVATYNAWYGGTDGGR FT APTNEDEEPEVFVMEAPAPTRSVASNPEGTQNSNESRPVQPAGPMPVAAAQALEMAVAT FT GQINDTIPSVVRETFSTYTNVTWTTRQPTGTLLARMSLGPGLNPYTLHLSAMWAGWGGS FT FEIKVIISGSGMYAGKLLCALIPPGVDPSAVDQPGAFPHALVDARITDGVTFTLGDVRA FT VDYHETGVGGAIASLALYVYQPLINPFETAVSAAMVTIETRPGPDFGFTLLKPPNQAME FT VGFDPRSLLPRTARTLRGNRFGRPITAVVIVGVAQQINRHFSAEGTTLGWSTAPIGPCV FT ARVNGKHTDNTGRAVFQLGPLSNGPLYPNIINHYPDVAASTIFNTGTAVNDNTTGGGGP FT MVIFNDVGDVVEDVAYQMRFIASHATSQSPTLIDQINATSMAVCSFGNSRADLNQNQLN FT VGIELTYTCGNTAINGIVTSFMDRQYTFGPQGPNNIMLWVESVLGTHTGNNTVYSSQPD FT TVSAALQGQPFNIPDGYMAVWNVNADSADFQIGLRRDGYFVTNGAIGTRMVISEDTTFS FT FNGMYTLTTPLIGPSGTSGRSIHSSR" FT CDS 6771..7265 FT /codon_start=1 FT /product="small basic protein" FT /note="orf2" FT /db_xref="GOA:Q9QEJ4" FT /db_xref="InterPro:IPR008437" FT /db_xref="UniProtKB/Swiss-Prot:Q9QEJ4" FT /protein_id="AAF04561.1" FT /translation="MSWIAGAMQGAGLLGDLAGTIGQIVLHNKQLNIMNSFNQAQIQLA FT KDQLKQNQQLANQYYEFNANLPVNQYNSAVSAGFDSVSARQLAGSREVRYLGGQQTPLV FT HQGQIHQMMFSPKHLMQAQHVVGTFSRGMPGVTPSKGLPRPQGVTAKVPVAGATTTHSK FT V" XX SQ Sequence 7320 BP; 1803 A; 1989 C; 1927 G; 1601 T; 0 other; gtgatcgtga tggctaattg ccgtccgttg cctattgggc agttgcccaa caggattttt 60 gacaccccac gactcacccc agggtgggtg tgggcgtgca cgagtgaagc cacgtttaag 120 ttggaatggc ttcaggatcc ggtggtcatt cgacccccgg acgtgtttgt ggcgcaaggg 180 gtggtggatg atttcttccg ccccaagcgc gttttgcagg gcgacccgca actcatcgca 240 caggtcctgc ttggtgacgc caatggacca ctggttggcc ctgtgtccat gcagcaactg 300 acatcactgt tgcatgaggt gtcgcaggcc ctaagtgacc acaagcaccc actggccaac 360 agatacacta gggcctcttt gcagaggtat gctgacacct tgtccaatta catacctctt 420 gtggacattc taacaggacc aaaggacctt accccacgtg acgttcttga acagctcgca 480 gcaggacgtg agtgggagtg tgtgccagat agtgctctga agaaggtttt cagggacatg 540 tggcagtaca tttgtgaggg gtgcgacagt gtgtacataa agcttcagga cgtgaagcgc 600 aaaatgccac acattgacac cactgtgctg aaacaattca ttatcacact gacagatacc 660 atctccatgg caacagcctt agacaccaaa acgtggcttg cgcacattct gggttggctc 720 aaacccacct gtttggtgat gatcatgcaa caacatgtca actcccccca ggggtgggct 780 gccacgttaa ctgctttggc agagctgtat tatggcatca tgccattaac agaaacactt 840 ggttctgttg ccagctgggt gactgacaaa tttgctgaca tggcgactag cacctggggc 900 aaattcaaat cctggtggga cagcctctac acgccgcagg caggcaatga tctcatcata 960 ttggggggcg ttgttgggct ggtgtacttc atggtgtttg gcgatgcacc cacccaaatg 1020 ttcaccaaga agctgatgag ggtgtgtggt tttatcacct cgacggtggc tgccattaaa 1080 gctgccatgt ggatagtgga ctacttcaag cagcgtgagc acgagcacca agtccgcatc 1140 accctagcaa gatgggccgc actccaggag gtgataaagc agaacaggtg tgctggtctt 1200 agcgaggtga ctaagttgaa ggaatgttgt gaagtgctgc tgaacgaggt caccgaattg 1260 atgtataagc tgggggcttc acctctggct gggttgatac gcagcacctc tgatgtgata 1320 caaaccacca tcaatgagct ggcccagttg atggcttatg atacccagcg taaaccaccc 1380 gccatggtgg tgttcggggg tccaccgggc ataggtaaaa ctcggctggt ggaggcccta 1440 gccaagcaac tgggagaggt cagccacttc accatgactg ttgaccacta tgacacgtac 1500 acaggcaaca cagtagcaat ttgggacgag tttgatgtgg actcaaaaca ggctttcatc 1560 gaagccacta ttggcatcgt gaattgtgcc ccttacccct tgaactgtga tcgccccgaa 1620 gcaaagggca gggttttcac atctaaatat gtgttggcta ccaccaattg ccccacccca 1680 gtcatgcctg accatccaag ggctatggct ttttggcgtc gcataacttt tattgacgtg 1740 acagccccca caattgaaca atggctggtg gacaacccag ggcgcaaagc ccctacaagt 1800 ctctttaagg atgacttttc ccatctgcaa tgctcagtac gcggctacac tgcctatgat 1860 gagaagggca acacactcag tggtaaggtg gccagggcca gatatgtgtc agtcaacaac 1920 ctccttgatc tgattaaaga gaagtacaac agcgaggccg ctgatgtcaa acatctatgg 1980 ttcaccgtcc cacaggccat ccataagcaa gcgcgtgaca tcatactggg ctggttgcgg 2040 ttccactcct acccgaacac agtcgcagac aacatacccc tttctgaggt cagagacccc 2100 acgtgttttg ggtatgtggt gatttctgat gtggatccac cacgacatgt agctgagcat 2160 gttgcccaca tagaagtgga gtcaatattg cgcactgaca ttgtgggctt gttgagggag 2220 ggtggtggag gcctgttcag agctctcaaa gtcaagagtg ccccccgcaa ctgtattatc 2280 aacaaggtca tgatgcaggc acaccacacc accttgcaag tgctcaccag tcaagaacca 2340 cacccaccaa acttaccacg gcccagacgc ttggtgtttg ttgagtcgcc aattgacatc 2400 atcagcgccc tacggcacca cgtcggcttt tgcaccatcc ctggcatcgt caaattgatc 2460 acctctgggg tggggttggg cgttgaaaac ttgggcaatt ttctccaatc cattgctggc 2520 aatgttcggt tccctttgca gtctgagtgc tcactgctca ggacgccaag tggtgacgtc 2580 ctcttttaca cctcaggaca ggctgccgtc tgggccacac ctgcgcgctt tccaatagtt 2640 acgccaggag aggcgtcagt tggcaaggag gtttgttcag agtcctcctg gtgggacatt 2700 ctcaaagcac tcttcagcac actggtggtg gcgtttggac ccattgccac actagtgttg 2760 acagcccaca acttggccta cttgaacacc cgtgaaaaca cgcttagcga ggcgaaaggg 2820 aaaaacaaac gcggacgtgg tgctcgcagg gccattgccc tcagggatga tgagtatgat 2880 gagtggcagg acatcatccg tgactggcgc aaggaaatga ctgttcaaca gttcctggat 2940 ctcaaggaac gcgcactgtc aggcgcatca gaccctgact cccaaagata caacgcttgg 3000 cttgaactgc gcgcaaagag gctgagcgct ggggcctacc aacacgcggt tgtggacatc 3060 atcggcaagt caggccacag gcgtgaggtg attcgcacac aggtcatgcg tgcgccacgt 3120 gagccaaaag gtgacaccta tgacagtgag gggcgtggat acgtggtacc catgactgcc 3180 caagagaagc acacaggttg ggcggtccac atcgggaatg ggcgcctggt cacttgcacg 3240 catgtggcca acatgtgtga ccgtgtagcc gaggtggagt tcaaggtcgc agaaacagac 3300 cgcgacacct gcatcatcac tgcccccctc ggccacctgc ctagcgttgc gcttggtaat 3360 gggccaccag cattttacac aaccaacttc caccccatcc gggtgctgga tgagggcagc 3420 tgggacacca caaccacccg tgtgacaggg tggcgcgtgg tcatcaacaa tggcacaaca 3480 acggccccag gcgactgcgg tcaaccctat ctcaatgcgc gacgacaact ggttggagtg 3540 cacgccgcaa ctagcacgtg tggggtgaag aagcttgtgt caagggtgca aaccaagaag 3600 accgcaaaag ccaccttccc atggaagggc ttgccagtaa caaccatgcc tgatgctggc 3660 ggattaccca ccgggacccg gtatcaccgg tccatcgcat ggccaaaatt gctcccagaa 3720 gaaacccatg cacctgcgcc ctatggcgtg aatgacccaa ggcacccctt ctcacaacac 3780 caaatgattg ccaataatct acaaccttat atcaacacac cagttgcttt ggatcaaacc 3840 ctgttgcaac gtgcagtcaa acacaccaaa ggctaccttg accaaatcat tgggacccat 3900 agatcaccaa acttgaccta tgctgctgcg gtcgaatcaa tggcccatga cacggcgtgc 3960 gggccaaact tgcctggccg gaaaaaggat tatatgacag accaagggga gccaattgga 4020 cctttgaaac aaatgttaga agaagcctgg gatatggcgc accgtggtgt tccacgcaga 4080 cacgagtaca agctcgcact caaggatgag cttcgcccca tagaaaagaa tgaccaaggc 4140 aaaaaacgcc tgctgtgggg ctgcgatgct ggcgtgtcaa tgatagccaa cgctgttttc 4200 aaacctgtta ctgagcgcct cgtggacacc gtgcccatgc accctgtggc tgttggcata 4260 tgtatggata gccctcagat tgaacaaatg aaccaagcct taactggtag ggtgctctat 4320 tgcctggact acagcaagtg ggattccaca caaaatccgg ccgtcacctg tgccagtgtt 4380 gacatcctgg cctcctatgc tgaggacaca cctttgtcct cggcagccat agccaccctg 4440 tgctcaccag ccgtgggcag gttggatgac atcggcttga ctgtgacatc agggctcccc 4500 tctggcatgc ccttcaccag tgttataaac tctgtgaatc acatgatcta ctttgccatg 4560 gctgtgctcg aggcctacga ggaattcaag gtgccttata tggggaacat ctttgacaat 4620 gagactattt acacctacgg ggatgattgt gtgtatggct taacaccagc cacagcctcc 4680 atcatgcctg tggtggtcaa gaacctgact agctatgggt tggtccccac tgctgcagac 4740 aaatctcaaa gcattgagcc aacagacact cctgtgttcc tcaagcgcac cttttcccaa 4800 accccttttg gtctgcgtgc gctactagat gagactagtc tggcgcggca gtgttactgg 4860 gttaaggcta accgcaccac agaccttttc gagccggcgg ccgttgatgt ggacatcagg 4920 aaaaaccaac tggaagtgat gcttgcatat gcaagccaac acccaagatc ggtgtttgac 4980 aagctggcag gcatggctga ggtcactgca agtgctgagg gctaccagct tgtgaatgtt 5040 aattgggcca acgcagtggc aacgtacaac gcatggtacg gtggcactga cggtggccgt 5100 gctcccacca atgaagatga agagccagaa gtgttcgtga tggaggcgcc tgccccaacc 5160 cgttcggttg cgagcaaccc agagggcact caaaatagta atgagtccag accagtccag 5220 ccagctgggc ccatgcccgt ggctgcggcc caggctctgg aaatggccgt tgccacaggg 5280 caaatcaatg ataccatccc cagtgtggtc agagagacct tcagtaccta caccaatgtc 5340 acctggacca cacgccagcc tacaggaact cttcttgccc gaatgtccct ggggccaggc 5400 ttgaacccct acacgctcca cttgtccgcc atgtgggccg gctggggtgg gtcatttgaa 5460 atcaaggtga taatatcagg gtctggcatg tatgcgggca aattgctgtg tgcgctcata 5520 ccacccggtg ttgatcccag tgctgtagac caacctgggg ccttcccgca tgcacttgtg 5580 gacgcgcgca tcactgacgg cgtcaccttc accttggggg acgtcagggc ggtggattat 5640 cacgagacag gagttggtgg ggctatagca agtttggcac tttacgtgta ccaaccgctc 5700 atcaaccctt ttgaaaccgc cgtgtcagct gccatggtga caattgagac ccgccctggc 5760 ccagattttg gattcaccct gctcaagcct ccaaaccaag ccatggaggt aggattcgac 5820 cctaggtcgc tcctgccccg cacggcaaga acactacggg ggaataggtt tggcagaccc 5880 atcacagctg tggtcatagt aggtgtggca caacaaatca acaggcactt ttcagctgag 5940 ggcaccacgc tcggctggtc cacggccccg attggccctt gtgtggcccg tgtcaatgga 6000 aagcacactg acaacacagg tagggcagtg tttcagttgg gacccttgag caatgggccc 6060 ctttacccca acatcatcaa ccactaccca gatgtggctg catcaacaat attcaacaca 6120 ggaactgccg taaatgacaa cacgacaggt gggggaggac ctatggtgat cttcaacgat 6180 gtgggtgatg tggtggagga cgtggcctac caaatgagat tcatagcctc acacgccact 6240 tcccaaagtc ccacactcat tgatcaaatc aatgcaacat caatggcagt atgcagcttt 6300 ggcaattccc gggcagacct caaccaaaac cagctcaatg tgggcattga attgacctac 6360 acctgtggca acacagcgat taatgggatt gtcacctcat ttatggaccg ccaatacaca 6420 tttggcccac aggggcctaa caacatcatg ctttgggtgg agtctgtgct cggcacacac 6480 acaggtaaca acactgtgta cagttcgcaa ccagacactg tgtctgctgc actgcagggc 6540 cagcccttca atataccaga tgggtacatg gccgtgtgga acgtcaatgc agacagtgct 6600 gatttccaga tagggctgag acgcgatggc tacttcgtca ccaatggggc catcggcacg 6660 cgcatggtca tctcagaaga caccaccttc agtttcaacg gcatgtacac cctaaccact 6720 cccctcattg gaccaagtgg gacatcagga aggtccattc acagctcacg atgagttgga 6780 ttgcaggagc aatgcagggc gctggcctgc tgggtgatct tgcaggcaca attggacaaa 6840 tagtgttgca taacaagcag ttgaatatta tgaattcttt taatcaggct cagatacagt 6900 tggctaaaga tcaattgaaa caaaatcagc aattagccaa ccagtattat gaatttaatg 6960 caaatttacc tgttaatcag tacaatagtg ccgtgagtgc tggttttgac tcagtttccg 7020 cgcgtcaatt ggctgggtca cgtgaagtgc gctaccttgg tgggcaacaa acacctttgg 7080 tccaccaagg acagatacac caaatgatgt tttcaccaaa acacttaatg caagcacaac 7140 acgtggtcgg cactttttcc cgtgggatgc ctggtgtcac ccccagtaag ggattgccca 7200 gaccacaggg cgttacagcc aaagtgcctg tggctggagc caccaccact cacagcaaag 7260 tgtgattttc tttccctggt tacgcgtacc gaaccttaca cagtgtggcg gctgtggggc 7320 //