ID AF176044; SV 1; linear; genomic RNA; STD; VRL; 7433 BP. XX AC AF176044; XX DT 07-SEP-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Enterovirus 71 polyprotein gene, complete cds. XX KW . XX OS Enterovirus A71 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Enterovirus; OC Enterovirus A. XX RN [1] RP 1-7433 RA Yang J.Y., Sun H.C., Tseng T.C., Chen H.Y.; RT "Complete nucleotide sequence of enterovirus 71 isolated from a patient RT with hand-foot-mouth disease in Taiwan"; RL Unpublished. XX RN [2] RP 1-7433 RA Yang J.Y., Sun H.C., Tseng T.C., Chen H.Y.; RT ; RL Submitted (06-AUG-1999) to the INSDC. RL Division of Viral Disease, Center for Disease Control, 161 Kun-Yang St. RL Nan-Kang Dist., Taipei 115, Taiwan, ROC. XX DR MD5; 0ee2a4d01e8feced2d3ca49ad54a811a. DR EuropePMC; PMC1489440; 16757623. DR EuropePMC; PMC1569848; 16939656. DR EuropePMC; PMC2566106; 18650362. DR EuropePMC; PMC2732463; 11927028. DR EuropePMC; PMC2975644; 20959020. DR EuropePMC; PMC415548; 15122971. DR EuropePMC; PMC4188181; 25674591. DR EuropePMC; PMC6172327; 30323801. DR RFAM; RF00048; Entero_CRE. DR RFAM; RF00229; IRES_Picorna. DR RFAM; RF00386; Entero_5_CRE. XX FH Key Location/Qualifiers FH FT source 1..7433 FT /organism="Enterovirus A71" FT /strain="1245a/98/tw" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /note="isolated from a patient with hand-foot-mouth FT disease" FT /db_xref="taxon:39054" FT 5'UTR 1..746 FT mat_peptide 747..953 FT /product="capsid protein VP4" FT CDS 747..7328 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q9QF52" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR036203" FT /db_xref="UniProtKB/TrEMBL:Q9QF52" FT /protein_id="AAD52643.1" FT /translation="MGSQVSTQRSGSHENSNSATEGSTINYTTINYYKDSYAATAGKQS FT LKQDPDKFANPVKDIFTEMAAPLKSPSAEACGYSDRVAQLTIGNSTITTQEAANIIVGY FT GEWPSYCSDSDATAVDKPTRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQ FT NAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQP FT GADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNF FT GLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAVTQGFPTELKPGTNQFLTTD FT DGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQ FT AGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAY FT TPPGGPLPKDRATAMLGTHVIWDFGLQSSVTLVIPWISNTHYRAHARDGVFDYYTTGLV FT SIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMKLCKDASDILQTGTIQGDRVADVIESS FT IGDSVSRALTRALPAPTGQDTQVSSHRLDTGKVPALQAAEIGASSNASDESMIETRCVL FT NSHSTAETTLDSFFSRAGLVGEIDLPLEGTTNPNGYANWDIDITGYAQMRRKVELFTYM FT RFDAEFTFVACTPTGQVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLSDPPA FT QVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPL FT VIRIYMRMKHVRAWIPRPMRNQNYLFKANPNYAGNSIKPTGASRTAITTLGKFGQQSGA FT IYVGNFRVVNRHLATHNDWANLVWEDSSRDLLVSSTTAQGCDTIARCNCQTGVYYCNSM FT RKHYPVSFSKPSLIFVEASEYYPARYQSHLMLAVGHSEPGDCGGILRCQHGVVGIVSTG FT GNGLVGFADVRDLLWLDDEAMEQGVSDYIKGLGDAFGMGFTDAVSREVEALKSHLIGSE FT GAVEKILKNLVKLISALVIVIRSDYDMVTLTATLALIGCHGSPWAWVKSKTASILGIPM FT AQKQSASWLKKFNDAASAAKGLEWISNKISKFIDWLKEKIIPAAKEKVEFLNNLKQLPL FT LENQISNLEQSAASQEDLEAMFGNVSYLAHFCRKFQPLYATEAKRVYALEKRMNNYMQF FT KSKHRIEPVCLIIRGSPGTGKSLATGIIARAIADKYHSSVYSLPPDPDHFDGYKQQIVT FT VMDDLCQNPDGKDMSLFCQMVSTVDFIPPMASLEEKGVSFTSKFVIASTNASNIIVPTV FT SDSDAIRRRFFMDCDIEVTDSYKTELGRLDAGRAARLCSENNTANFKRCSPLVCGKAIQ FT LRDRKSKVRYSVDTVVSELIREYNNRSVIGNTIEALFQGPPKFRPIRISLEEKPAPDAI FT SDLLASVDSEEVRQYCRDQGWIVPDSPTNVERHLNRAVLIMQSVATVVAVVSLVYVIYK FT LFAGFQGAYSGAPKQTLKKPVLRTATVQGPSLDFALSLLRRNIRQVQTDQGHFTMLGVR FT DRLAVLPRHSQPGKTIWVEHKLVKIVDAVELVDEQGVNLELTLVTLDTNEKFRDITRFI FT PETISPASDATLVINTEHMPSMFVPVGDVVQYGFLNLSGKPTHRTMMYNFPTKAGQCGG FT VVTAVGKVIGIHIGGNGRQGFCAALKRGYFCSEQGEIQWMKPNKETGRLNINGPTRTKL FT EPSVFHDVFEGTKEPAVLTSKDPRLEVDFEQALFSKYVGNTLHEPDEFVKEAALHYANQ FT LKQLDIKTTKMSMEDACYGTENLEAIDLHTSAGYPYSALGIKKKDILDPTTRDVSKMKF FT YMDKYGLDLPYSTYVKDELRAIDKIKKGKSRLIEASSLNDSVYLRMTFGHLYEAFHANP FT GTITGSAVGCNPDVFWSKLPILLPGSLFAFDYSGYDASLSPVWFRALEIVLREIGYSED FT AVSLIEGINHTHHVYRNKTYCVLGGMPSGCSGTSIFNSMINNIIIRTLLIKTFKGIDLD FT ELNMVAYGDDVLASYPFPIDCLELARTGKEYGLTMTPADKSPCFNEVTWENATFLKRGF FT LPDHQFPFLIHPTMPMREIHESIRWTKDARSTQDHVRSLCLLAWHNGKEEYEKFVSAIR FT SVPIGKALAIPNYENLRRNWLELF" FT mat_peptide 954..1715 FT /product="capsid protein VP2" FT mat_peptide 1716..2441 FT /product="capsid protein VP3" FT mat_peptide 2442..3332 FT /product="capsid protein VP1" FT mat_peptide 3333..3782 FT /product="protein 2A" FT mat_peptide 3783..4079 FT /product="protein 2B" FT mat_peptide 4080..5066 FT /product="protein 2C" FT mat_peptide 5067..5324 FT /product="protein 3A" FT mat_peptide 5325..5390 FT /product="protein 3B" FT mat_peptide 5391..5939 FT /product="protein 3C" FT mat_peptide 5940..7325 FT /product="protein 3D" XX SQ Sequence 7433 BP; 2038 A; 1765 C; 1813 G; 1817 T; 0 other; tttaaaacag cctgtgggtt gcacccaccc acagggccca ctgggcgcta gcactctggt 60 actgaggtac ctttgtgcgc ctgtttttac tccccttccc ccgaagtaac ttagaagctg 120 taaatcaacg atcaatagca ggtgtggcac accagtcata ccttgatcaa gcacttctgt 180 ttccccggac tgagtatcaa taggctgctc gcgcggctga aggagaaaac gttcgttacc 240 cgaccaacta cttcgagaag cttagtacca ccatgaacga ggcagggtgt ttcgctcagc 300 acaaccccag tgtagatcag gctgatgagt cactgcaacc cccatgggcg accatggcag 360 tggctgcgtt ggcggcctgc ccatggagaa atccatggga cgctctaatt ctgacatggt 420 gtgaagagcc tattgagcta gctggtagtc ctccggcccc tgaatgcggc taatcctaac 480 tgcggagcac atgctcacaa accagtgggt ggtgtgtcgt aacgggcaac tctgcagcgg 540 aaccgactac tttgggtgtc cgtgtttcct tttattccta tattggctgc ttatggtgac 600 aatcaaagag ttgttaccat atagctattg gattggccat ccggtgtgca acagggcaat 660 tgtttaccta tttattggtt ttgtaccatt atcactgaag tctgtgatca ctctcaaatt 720 cattttgacc ctcaacgcaa tcaaacatgg gctcacaggt gtccacacaa cgctccggtt 780 cacacgaaaa ctctaactca gctaccgagg gttccactat aaactatact accattaatt 840 actataaaga ttcctatgcc gccacagcag gtaagcagag ccttaagcag gacccagaca 900 agtttgcaaa tcctgtcaaa gacatcttca ctgaaatggc agcgccatta aaatctccat 960 ctgctgaggc atgtggttac agcgatcggg tggcacaatt aactattggc aattctacca 1020 tcactacgca agaagcagca aacatcatag ttggctatgg ggagtggcct tcctactgtt 1080 cggactctga tgctactgca gtggacaaac caacgcgccc agatgtttcg gtgaataggt 1140 tttacacatt ggacacaaaa ttgtgggaga aatcatccaa ggggtggtac tggaaattcc 1200 cggatgtgtt aactgaaacc ggggtctttg gtcaaaatgc acagttccac tacctctatc 1260 ggtcagggtt ctgcattcac gtgcagtgca atgctagtaa gttccaccaa ggagcactcc 1320 tagtcgctgt cctcccagag tatgtcattg ggacagtggc aggtggcaca gggacggagg 1380 atagccaccc cccttataag cagactcaac ccggtgctga tggcttcgaa ttgcaacacc 1440 cgtacgtgct tgatgctggc attccaatat cacaattaac agtgtgccca catcagtgga 1500 ttaatttgag gaccaacaat tgtgccacaa taatagtgcc gtacataaac gcactaccct 1560 ttgattctgc cttgaaccat tgtaactttg gtctgctggt tgtgcctatt agcccgttag 1620 attatgacca aggtgcgacg ccagtgatcc ccattactat cactttggcc ccaatgtgtt 1680 ctgaatttgc aggccttaga caagcagtta cgcaagggtt tcctactgag ctgaaacctg 1740 gcacaaacca atttttaacc actgacgatg gcgtctcagc acccattctg ccaaactttc 1800 accccacccc gtgtatccat atacccggtg aagttagaaa cttgctagag ctatgccagg 1860 tggagaccat tttagaggtc aacaatgtac ctacgaatgc cactagctta atggagagac 1920 tgcgcttccc ggtctcagct caagccggga aaggtgagct atgtgcagtg ttcagagctg 1980 accctggacg aagtgggcca tggcagtcca ccttgttggg ccagttgtgc gggtactaca 2040 cccaatggtc aggatcactg gaagtcacct tcatgttcac cgggtccttt atggctaccg 2100 gcaagatgct catagcatac acaccaccag gaggcccctt acccaaggac cgggcgaccg 2160 ccatgttggg cacgcacgtc atctgggact ttgggctgca atcgtctgtc acccttgtaa 2220 taccatggat cagcaacact cattacagag cgcacgctcg agatggtgtg ttcgactact 2280 acactacagg tttggttagc atatggtacc agacgaatta tgtggttcca attggggcac 2340 ccaatacagc ctatataata gcattggcgg cagcccagaa gaacttcacc atgaaattgt 2400 gtaaggatgc tagtgatatc ctacagacag gcactatcca gggagatagg gtggcagatg 2460 tgattgagag ttctataggg gacagtgtga gcagagccct cacccgagct ctaccggcac 2520 ctaccggcca agacacacag gtaagcagcc accgattaga tactggtaaa gttccagcac 2580 tccaagccgc tgaaattgga gcatcatcaa atgctagtga tgagagtatg attgagacac 2640 ggtgtgttct taattcacat agtacagctg agaccactct tgatagcttc ttcagcagag 2700 caggattagt tggagagata gacctccctc ttgaaggcac aaccaacccg aatgggtacg 2760 caaactggga catagacata acaggttacg cgcaaatgcg tagaaaggtg gagctgttca 2820 cctacatgcg ttttgacgca gagttcacct ttgttgcatg cacccctacc gggcaagttg 2880 tcccgcaatt gctccaatac atgtttgtac cacccggagc ccccaagcca gactccagag 2940 aatctctcgc atggcaaact gccactaatc cctcagtttt tgtgaaactg tcagaccccc 3000 cagcacaggt ttctgttcca ttcatgtcac ctgcgagcgc ctatcaatgg ttttatgacg 3060 ggtatcccac attcggtgaa cacaaacagg agaaagacct tgaatacggg gcatgcccaa 3120 acaacatgat gggtacgttc tcagtgcgga ctgtaggcac ctcgaagtcc aagtacccat 3180 tggtgatcag gatttacatg aggatgaagc acgtcagggc gtggatacct cgcccaatgc 3240 gtaaccagaa ctatctattc aaagccaacc caaattatgc tggtaattct attaaaccaa 3300 ctggtgccag tcgcacagca atcaccactc tcgggaaatt tggacagcag tccggagcta 3360 tctacgtggg caactttaga gtggttaacc gccatcttgc tactcataat gactgggcaa 3420 accttgtttg ggaagacagc tcccgcgact tgctcgtatc atctaccact gctcaaggtt 3480 gtgacacgat tgctcgttgc aattgccaga caggagtgta ttattgtaac tcaatgagaa 3540 aacactatcc ggtcagtttc tcgaaaccca gtttgatctt cgtggaggcc agcgagtatt 3600 atccagctag ataccagtca catctcatgc ttgcagtggg tcattcggaa ccaggggatt 3660 gcggtggcat tcttagatgc caacatggcg tcgtagggat agtttccacc gggggaaacg 3720 gcctggtggg gttcgccgat gtgagggatc ttctgtggtt ggatgatgaa gccatggagc 3780 agggcgtgtc tgattacatt aaagggcttg gagatgcttt tggcatgggg tttacagacg 3840 cagtgtcaag agaagttgaa gcactgaaaa gtcacttgat cggctcagag ggtgccgtgg 3900 agaagattct aaagaactta gttaaactca tctctgcgct cgtcatcgtc atcaggagtg 3960 attatgacat ggtcacattg acggcaacac ttgccctgat cgggtgccac gggagccctt 4020 gggcctgggt taagtcgaag acagcatcaa ttttgggcat accgatggct cagaagcaga 4080 gtgcctcttg gttaaagaag ttcaacgatg cggcgagtgc cgcgaagggg cttgagtgga 4140 tctccaacaa aatcagtaaa tttatcgatt ggctcaagga gaaaatcata ccggctgcta 4200 aagagaaagt cgagtttcta aacaatctaa agcaactccc cttattggag aaccaaattt 4260 ctaatctcga acagtcagca gcttcgcagg aggaccttga ggcgatgttt ggcaacgtgt 4320 cttatctggc ccacttctgc cgcaaattcc aacccctcta tgccacggaa gcaaagaggg 4380 tgtacgccct agaaaagaga atgaataatt acatgcagtt caagagcaaa caccgtattg 4440 aacctgtatg cctaatcatc agaggctcgc ctggtactgg gaagtccttg gcaacaggga 4500 ttattgctag agccatagca gacaagtacc actccagtgt gtattcctta cctccagacc 4560 cagaccactt tgacggatac aaacaacaga tcgtcactgt tatggacgac ctatgccaaa 4620 acccagacgg gaaagacatg tcactatttt gtcagatggt ctccacagtg gattttatac 4680 cgcctatggc atctctggag gagaagggag tctcattcac ctccaagttt gtgattgcct 4740 ccactaacgc cagtaacatc atagtgccaa cagtctcgga ttcagatgcc attcgtcgcc 4800 ggttctttat ggactgcgat attgaggtga ccgattccta taagacagag ctgggcagac 4860 ttgatgcagg gagagcagcc aggctgtgct ctgagaacaa cactgcaaac tttaaacggt 4920 gcagtccatt agtctgtggg aaggcaatcc agcttaggga taggaagtcc aaggtgagat 4980 acagtgtgga cacggtagtg agtgaactta tcagggagta taacaacaga tcagttattg 5040 ggaacaccat tgaagctctt ttccaaggac cccctaaatt taggccaata aggattagct 5100 tagaggagaa gcccgcacct gatgctatta gtgacttatt agctagtgtt gatagtgaag 5160 aggttcgcca atactgtaga gatcagggat ggattgtacc tgattctccc accaacgttg 5220 agcgccactt gaatagagct gtcttgatta tgcagtctgt agccaccgtg gtagcagttg 5280 tgtcccttgt ttacgtcatc tacaagttgt tcgccggttt tcaaggagca tattccggcg 5340 cccccaagca aacactcaag aaaccagtgc tgcgcacggc aactgtgcag gggccgagct 5400 tggacttcgc cctatctcta cttaggagga acattaggca ggtccaaacc gaccagggcc 5460 actttacaat gttaggagtg cgagaccgct tggctgtgct ccccagacac tcccaaccag 5520 gaaagaccat ctgggttgaa cacaaattag tgaagatcgt agatgctgtg gagttagtag 5580 acgaacaagg ggttaactta gagctcacac tggtaacgct tgatactaac gaaaaattta 5640 gagacatcac aagattcata ccagaaacaa ttagtcctgc tagtgatgcc actttagtta 5700 taaatactga acatatgccc agtatgtttg tgccagttgg agatgtggtc cagtatgggt 5760 ttttgaacct tagtggtaag cccactcaca ggactatgat gtacaatttc ccaacaaaag 5820 caggacagtg tggtggtgtt gtgactgccg tgggtaaagt gattgggatc cacattggtg 5880 gcaacggtag gcaaggtttc tgcgctgccc tgaagagggg atacttttgc agtgaacaag 5940 gtgagatcca atggatgaag cccaacaaag aaactggcag gttgaacatc aacggaccta 6000 ctcgcactaa gcttgaacca agtgtctttc acgatgtgtt cgaaggcact aaagagccag 6060 cagtgttgac tagtaaagac ccaaggctgg aagttgactt tgaacaggct cttttttcaa 6120 aatacgtggg gaacacgctt catgaacccg acgagtttgt caaggaggcg gccttacatt 6180 atgccaacca actcaagcag ttagatatca agaccaccaa gatgagcatg gaggatgcat 6240 gttacggcac agagaacctg gaagctatag atcttcacac aagtgcagga tatccataca 6300 gtgcactagg catcaagaaa aaggacattt tggatccaac aactcgcgat gtcagcaaga 6360 tgaaattcta catggacaag tatgggttgg atctaccgta ctctacttat gttaaagatg 6420 aacttagggc catcgacaag atcaagaaag ggaagtctcg tctcatagaa gcgagcagtc 6480 taaatgactc agtgtacttg agaatgacat ttgggcacct ttatgaagct ttccacgcca 6540 atccaggtac aatcactggt tcagctgttg ggtgtaaccc agatgtgttc tggagcaagt 6600 taccaattct acttccagga tcgcttttcg cgtttgacta ctcggggtat gacgctagtc 6660 tcagcccagt gtggttcagg gcgctggaga tagtcctgcg ggaaattgga tactccgaag 6720 acgcagtgtc tctcatagaa gggatcaatc acacccatca tgtgtaccgc aataaaactt 6780 attgtgttct tgggggaatg ccctcaggtt gctcaggcac ctccattttc aactcgatga 6840 tcaacaatat cattattaga acactcctga ttaaaacatt caaagggata gatctagatg 6900 aactgaacat ggtggcctac ggggatgatg tgttggctag ttaccccttc ccaattgact 6960 gtctggagtt ggcaagaaca ggcaaggagt atggtctaac tatgacccct gccgacaagt 7020 caccctgctt taatgaggtt acatgggaga atgccacttt cttgaagaga ggattcttgc 7080 ctgatcatca attcccgttt ctcatccacc ctacgatgcc aatgagggag attcacgaat 7140 ccattcgttg gaccaaagat gcacgaagta ctcaagatca cgtgcgctcc ctctgcttat 7200 tagcatggca caacgggaaa gaggagtatg aaaaatttgt gagtgcaatc agatcagttc 7260 caattggaaa agcattggct ataccaaatt atgagaatct gagaagaaat tggctcgaat 7320 tgttttaaat ttacagtttg taactgaacc ccaccagtaa tctggtcgtg ttaatgactg 7380 gtgggggtaa atttgttata ccagaatagc aaaaaaaaaa aaaaaaaaaa aaa 7433 //