ID   AF174534; SV 1; linear; genomic RNA; STD; VRL; 1336 BP.
XX
AC   AF174534;
XX
DT   08-AUG-2000 (Rel. 64, Created)
DT   20-JUN-2003 (Rel. 76, Last updated, Version 3)
XX
DE   Nodamura virus RNA2 segment, complete sequence.
XX
KW   .
XX
OS   Nodamura virus
OC   Viruses; Riboviria; Nodaviridae; Alphanodavirus.
XX
RN   [1]
RP   1-1336
RX   DOI; 10.1006/viro.2002.1769.
RX   PUBMED; 12573589.
RA   Johnson K.L., Price B.D., Ball L.A.;
RT   "Recovery of infectivity from cDNA clones of nodamura virus and
RT   identification of small nonstructural proteins";
RL   Virology 305(2):436-451(2003).
XX
RN   [2]
RP   1-1336
RA   Johnson K.L., Ball L.A.;
RT   "Complete genome sequence of Nodamura virus derived from functional cDNA
RT   clones";
RL   Unpublished.
XX
RN   [3]
RP   1-1336
RA   Johnson K.L., Ball L.A.;
RT   ;
RL   Submitted (02-AUG-1999) to the INSDC.
RL   Microbiology, University of Alabama at Birmingham, 845 19th Street South,
RL   Birmingham, AL 35294-2170, USA
XX
DR   MD5; 1dda79df3c325f897591bad41848fa8d.
DR   EuropePMC; PMC110865; 10799587.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1336
FT                   /organism="Nodamura virus"
FT                   /segment="RNA2"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12288"
FT   CDS             20..1219
FT                   /codon_start=1
FT                   /product="capsid protein precursor alpha"
FT                   /db_xref="GOA:P12871"
FT                   /db_xref="InterPro:IPR000696"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="PDB:1NOV"
FT                   /db_xref="UniProtKB/Swiss-Prot:P12871"
FT                   /protein_id="AAF97862.1"
FT                   /translation="MVSKAARRRRAAPRQQQRQQSNRASNQPRRRRARRTRRQQRMAAT
FT                   NNMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSITFTPGKQTM
FT                   LLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTSATDTAANVTAFRYASMA
FT                   AGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQTVATVPPTNLAQNTIAIDGLEALDALP
FT                   NNNYSGSFIEGCYSQSVCNEPEFEFHPIMEGYASVPPANVTNAQASMFTNLTFSGAAYT
FT                   GLGDMDAIAILVTTPTGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYR
FT                   KIARDIPIAVACKDNATFWERVRSILKSGLNFASTIPGPVGVAATGIKGIIEAIGSLWV
FT                   "
FT   mat_peptide     20..1084
FT                   /product="capsid protein beta"
FT   mat_peptide     1085..1216
FT                   /product="capsid protein gamma"
XX
SQ   Sequence 1336 BP; 345 A; 377 C; 304 G; 310 T; 0 other;
     gtaaacaacc aataacatca tggtatccaa agcagcacgc cgccgaagag cggcccctcg        60
     acaacaacaa cgacaacagt cgaaccgtgc atcaaaccag cctcgtcgga ggagagctcg       120
     ccgtactcga agacagcaga gaatggcagc aacaaacaac atgctgaaaa tgagcgctcc       180
     cggactcgat tttctgaaat gtgcctttgc ttcgccggat ttttccaccg atcccggcaa       240
     aggtattcca gacaaatttc agggtctcgt tttaccgaag aaacattgtc tgacccagtc       300
     gataacgttt actccgggga aacagactat gctgttggtt gcacctattc ctggaattgc       360
     ttgcctgaag gcagaagcga atgttggcgc atccttttca ggtgttcctc ttgcctcagt       420
     tgaatttcca gggttcgacc agctgtttgg cacgtcagca actgacaccg cagctaatgt       480
     cactgctttc cggtatgcgt caatggcagc cggtgtttac cccacgagca atctaatgca       540
     atttgctggg tcaatacagg tgtacaagat acctctaaaa caggttctta actcctactc       600
     tcagaccgta gcgaccgtac cacctaccaa cttggctcag aacacaattg caatagatgg       660
     actagaagcg ttagatgcac taccaaataa caactactcc ggttctttta tcgagggttg       720
     ttattcacaa tcggtgtgca atgaacctga gtttgagttc catcccatca tggagggtta       780
     cgcgtccgtt ccacccgcga acgtaaccaa tgctcaagct agcatgttca ccaatctaac       840
     cttctcaggc gcagcatata ccggtcttgg cgacatggac gcaattgcga tccttgtgac       900
     tacgcccacc ggtgccgtca acacggccgt gctgaaggtc tgggcctgcg tagagtatcg       960
     tccgaatcca aattccaccc tctatgagtt cgctcgtgag tcaccagcaa acgacgaata      1020
     cgcgctcgcc gcctatagga aaattgccag agatattccg attgccgtcg cttgcaaaga      1080
     caacgccaca ttttgggaac gcgtccgatc catcctgaaa tctgggctca actttgcttc      1140
     gaccatacct ggccccgtag gagtggcagc gacagggatc aaaggcatca ttgaagccat      1200
     tggttccttg tgggtttgat tccacccaca gaagcgttga cgacgcaaaa cgtccttaaa      1260
     gcgttgacga cgcaaaacgt ccccaagctc gtagcaccga ccctataccc atctctaggg      1320
     tcttcaacct cttggt                                                      1336
//