ID AF174533; SV 1; linear; genomic RNA; STD; VRL; 3204 BP. XX AC AF174533; XX DT 08-AUG-2000 (Rel. 64, Created) DT 20-JUN-2003 (Rel. 76, Last updated, Version 3) XX DE Nodamura virus RNA1 segment, complete sequence. XX KW . XX OS Nodamura virus OC Viruses; Riboviria; Nodaviridae; Alphanodavirus. XX RN [1] RP 1-3204 RX DOI; 10.1006/viro.2002.1769. RX PUBMED; 12573589. RA Johnson K.L., Price B.D., Ball L.A.; RT "Recovery of infectivity from cDNA clones of nodamura virus and RT identification of small nonstructural proteins"; RL Virology 305(2):436-451(2003). XX RN [2] RP 1-3204 RA Johnson K.L., Ball L.A.; RT "Complete genome sequence of Nodamura virus derived from functional cDNA RT clones"; RL Unpublished. XX RN [3] RP 1-3204 RA Johnson K.L., Ball L.A.; RT ; RL Submitted (02-AUG-1999) to the INSDC. RL Microbiology, University of Alabama at Birmingham, 845 19th Street South, RL Birmingham, AL 35294-2170, USA XX DR MD5; 235c8afa9c78ab4a804729f358f6f993. DR EuropePMC; PMC4093860; 24696464. XX FH Key Location/Qualifiers FH FT source 1..3204 FT /organism="Nodamura virus" FT /segment="RNA1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12288" FT CDS 22..3153 FT /codon_start=1 FT /product="RNA dependent RNA polymerase protein A" FT /db_xref="GOA:Q9IMM4" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q9IMM4" FT /protein_id="AAF97860.1" FT /translation="MLNYETIINGASSALNIVSRALGYRVPLAKSLALVAGSCVVYKII FT VHRRTLVAFLVIGPYATVVQHRLPMALQRAIIEYTREDREISLFPQNSIVSAEHARKAD FT NGHPISGGTRDVARETISLAIRAAGFRHYEISPARQSPAEAASHQHYAAADLVRAATED FT KIQDGDVVVAIDIDYYLRDIDRYLGRGVPFMAYTFNPVEVAGRDGDSFFRITNNQVTFD FT VSGGGSWSHEVWDWCAFGEFIETRDASWLAWFARAVGLTKSQIHKVHYCRPWPQSPHRA FT LVWCLPVASYWRFTFIPTDLHTRTLRRVRYQDTSRPGWNSIVSTGSEGLNISLGREGAD FT HCVTIPKVHYDMLMGLSSAQSLSSRMIGLKYTDPSVLATVAQYYQGKNVEVADADRIGR FT AINPKVHWPAHVEVDEAEVSARVYASPLVSDENMMPMIKRWETLSLSLDRRVTFQRNPK FT VPGKRLRAYAIEFVDLVVPERGVGVPYSLEDTAAMLDKPSQTLAIQQVWETVDMPPRRL FT IEAFVKNEPTMKAGRIISSFADMRFLLRFSSYTLAFRDQVLHAEHNRHWFCPGLTPEQI FT ATKVVDYVSGVEEPSEGDFSNFDGTVSEWLQRHVMNAVYLRYFNHRAQRDLRSYTDMLV FT SCPARAKRFGFAYDAGVGVKSGSPTTCDLNTVCNGFLQYCSIRMTHPELTPIDAFRLIG FT LAFGDDSLFERRFAKNYAKVSAEVGMVLKIERFDPAQGITFLARVYPDPYTSTTSFQDP FT LRTWRKLHLTTRDPTIPLATAAIDRVEGYLVTDGLSPLTGAYCRMVKRVYEAGGAEDAA FT KRRSRKSHSREKPYWLTVGGAWPQDVKDVDLMFQCAAARTGVDLETLRSLDQRLGEITD FT VWADITINRDNEPNPYKDTLDLEGPADGRVDDRVFQNDKHVMRLRANQVTSSQAGAAGS FT GDASNDPNAHDRGSQRQQGSASVLRVPDRAAPAGVSSDEQPAHQTASRSSASRGGAGPG FT RGGRRRPGPPAKTTAGGARDGNQARAPTSGPSKRQAEGRSRSSRGPAGSRGRGK" FT CDS 2744..3157 FT /codon_start=1 FT /product="protein B2" FT /db_xref="GOA:Q9IMM3" FT /db_xref="PDB:3G80" FT /db_xref="UniProtKB/Swiss-Prot:Q9IMM3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAF97861.1" FT /translation="MTNMSCAYELIKSLPAKLEQLAQETQATIQTLMIADPNVNKDLRA FT FCEFLTVQHQRAYRATNSLLIKPRVAAALRGEELDLGEADVAARVRQLKQQLAELEMEI FT KPGHQQVAQVSGRRKAAAAAPVAQLGRVGVVNE" FT misc_feature 2753 FT /note="alternate site of translation initiation" XX SQ Sequence 3204 BP; 697 A; 895 C; 921 G; 691 T; 0 other; gtattgaatc caaaactcaa aatgctgaac tacgagacaa tcatcaacgg cgcatcgagc 60 gctctgaaca tcgtttcgcg tgcgttagga taccgcgtgc cactagccaa atcgctggcg 120 ctggtcgcgg ggtcctgcgt ggtgtacaaa ataatcgtgc atcgacgcac gctcgtggcg 180 ttcctggtaa tcggaccata cgccacggtg gtgcagcacc gtctgccgat ggcccttcag 240 agggccatca ttgaatatac acgagaagac cgtgagatca gcctgtttcc gcaaaattcc 300 atcgtttccg cagaacacgc gcggaaagcg gataatgggc atccgatctc cgggggaacg 360 cgtgatgtcg cgagggagac tatttccctt gccataaggg ccgctggttt tcgtcattac 420 gaaatcagcc ccgcgaggca atcaccagct gaggcggcaa gccaccaaca ttatgccgcc 480 gctgacctcg tgagagcggc tactgaagat aagatccaag acggtgatgt ggtagttgcc 540 atcgacatcg attactacct gcgtgacatt gaccgctacc tgggtcgtgg tgtcccgttc 600 atggcttaca ccttcaatcc tgttgaagta gctggccgtg acggtgactc ctttttccgg 660 atcacgaaca atcaagtcac gtttgatgtt agtggcggtg gatcttggtc ccatgaagtt 720 tgggactggt gcgcgtttgg tgagttcatc gagacccgag acgcgagctg gcttgcttgg 780 ttcgcccggg cggttggact caccaagtcg cagatccaca aagttcacta ctgccgtcca 840 tggccgcaat cgccccatcg cgctttggtg tggtgtctgc ctgtagcaag ctactggcgc 900 ttcactttca ttccgacgga cctgcatacg cgcacgcttc ggcgtgtgcg ttatcaggac 960 acgtcccggc ccggttggaa ttccatcgtc tcgaccgggt ccgaaggcct taatatcagc 1020 cttggtcgcg aaggagctga tcattgcgtg acgattccaa aggtgcacta cgacatgctt 1080 atgggtttgt cgagtgcgca gtcgttgtcg tcccgcatga tcgggctcaa gtacactgat 1140 cctagtgtac tcgcgacggt tgcccaatac tatcagggca agaatgttga agttgccgac 1200 gctgacagga tcggccgcgc cataaatccc aaggtccact ggccagcgca cgtcgaagtt 1260 gacgaggcgg aggttagtgc tcgggtgtac gccagcccgt tggtatctga cgaaaatatg 1320 atgcctatga tcaagcgctg ggagacgctg tcgttgtcgc tggaccgccg ggttacattc 1380 caacgtaatc cgaaggttcc tggaaaacgg ctcagggctt atgccattga gttcgttgac 1440 ttggttgtgc ctgagcgtgg tgtcggagtc ccctattcat tggaggacac cgccgccatg 1500 ctggacaaac caagccagac cctcgccatc caacaggtgt gggagactgt cgacatgccc 1560 ccaagaaggc tcatcgaagc gttcgtgaag aacgaaccga ccatgaaggc tggccgtatc 1620 atctcgtcgt tcgctgacat gcggttccta ctgcggtttt ccagctatac gctggcattc 1680 cgtgatcagg tgctgcatgc agagcacaac cggcattggt tttgcccggg tttgaccccc 1740 gagcagatcg ccacaaaagt ggttgattac gtgtccggtg ttgaagaacc atcggaggga 1800 gacttttcca actttgatgg cacggttagt gagtggctac aacgccacgt catgaacgcc 1860 gtctacctgc gttatttcaa tcaccgagcg cagcgagacc tcaggtcgta taccgacatg 1920 ctggtctcat gccccgcgag ggcgaagcga ttcggttttg cttatgacgc gggtgtcggc 1980 gttaagagcg ggtcgccaac aacttgcgac ctgaataccg tgtgcaatgg tttcctccaa 2040 tattgctcca ttcgaatgac acacccagag ctgacaccaa tcgatgcttt ccggctcatc 2100 ggtctcgcgt ttggggacga ttccctcttc gagcgacgtt tcgctaagaa ctatgcgaag 2160 gtttccgccg aggtggggat ggtcctcaaa atcgagcgat tcgacccggc acaaggcatc 2220 actttcctcg cccgtgttta tcccgacccc tacacgtcga ccacaagttt ccaggaccct 2280 ttgcgtacct ggaggaagct ccacttgacg acgcgcgatc caacaatacc attggcaacg 2340 gctgccatcg atcgcgttga gggctacctc gtcaccgacg gcctgagccc gcttactggc 2400 gcgtattgtc gcatggttaa gcgggtttac gaggccggcg gagccgagga tgccgccaag 2460 aggaggtcgc gaaaatccca ttcccgcgaa aagccgtatt ggttgactgt tggaggcgct 2520 tggccccaag atgtcaagga cgttgatctt atgttccagt gtgcggccgc acgtaccgga 2580 gtagacctcg agacacttcg gtctctggat cagcgtctag gagaaatcac tgacgtctgg 2640 gcggatatta ccatcaaccg ggataatgaa ccaaacccct acaaggatac actggacttg 2700 gagggcccgg ctgatggccg ggtggacgat cgtgtatttc agaatgacaa acatgtcatg 2760 cgcttacgag ctaatcaagt cacttccagc caagctggag cagctggctc aggagacgca 2820 agcaacgatc caaacgctca tgatcgcgga tcccaacgtc aacaaggatc tgcgagcgtt 2880 ctgcgagttc ctgaccgtgc agcaccagcg ggcgtatcga gcgacgaaca gcctgctcat 2940 caaaccgcga gtcgcagcag cgcttcgcgg ggaggagctg gacctgggcg aggcggacgt 3000 cgccgcccgg gtccgccagc taaaacaaca gctggcggag ctcgagatgg aaatcaagcc 3060 agggcaccaa caagtggccc aagtaagcgg caggcggaag gccgcagccg cagctcccgt 3120 ggcccagctg ggtcgcgtgg gcgtggtaaa tgagtgattc atcgtcccat ctgacgaaac 3180 ccgaactagg cttatgccag tggt 3204 //