Dbfetch
ID AF173555; SV 1; circular; genomic DNA; STD; VRL; 2644 BP. XX AC AF173555; XX DT 07-SEP-1999 (Rel. 61, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Bean golden yellow mosaic virus-[Mexico] DNA-A, complete sequence. XX KW . XX OS Bean golden yellow mosaic virus-[Mexico] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2644 RA Garrido-Ramirez E.R., Gilbertson R.L.; RT "Molecular detection and characterization of bean golden mosaic geminivirus RT (BGMV) from Chiapas, Mexico"; RL Phytopathology 86:S17-S17(1996). XX RN [2] RP 1-2644 RA Garrido-Ramirez E.R., Gilbertson R.L.; RT ; RL Submitted (29-JUL-1999) to the INSDC. RL Plant Pathology, University of California, Davis, One Shields Avenue # 1, RL Davis, CA 95616, USA XX DR MD5; ffc32794368e837aeb60ed9cad998121. DR EuropePMC; PMC3485178; 23082767. DR EuropePMC; PMC5408669; 28358318. XX FH Key Location/Qualifiers FH FT source 1..2644 FT /organism="Bean golden yellow mosaic virus-[Mexico]" FT /segment="DNA-A" FT /mol_type="genomic DNA" FT /country="Mexico:Chiapas" FT /note="type: II" FT /db_xref="taxon:222447" FT gene complement(join(1589..2644,1..6)) FT /gene="AC1" FT CDS complement(join(1589..2644,1..6)) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /note="DNA polymerase" FT /db_xref="GOA:Q9QGH3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9QGH3" FT /protein_id="AAD53082.1" FT /translation="MPPPQRFRVQSKNYFLTYPRCSIPKEEALSQLQKIHTATNKKFIK FT VCEERHENGEPHLHALIQFEGKFVCTNKRLFDLVSSTRSAHFHPNIQGAKSSSDVKAYI FT DKGGVTIEWGQFQVDGRSARGGQQSANDSYAKALNADSIESALSVLKEEQPKDYVLQHH FT NIRSNLERIFVKAPEPWVPPFPLSSFINVPVVMQEWVDDYFGRGSAARPERPISIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNAVEYNVIDDISPNYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKEENRALHNWTIHNAIFVTLT FT APLYQSTAQDCQT" FT misc_feature 1..207 FT /note="common region of bipartite geminiviruses" FT gene 367..1122 FT /gene="AV1" FT CDS 367..1122 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q9QGH6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QGH6" FT /protein_id="AAD53081.1" FT /translation="MPKRDAPWRQMAGTYKVSRSGNYSPGSGMGSKSNKANAWVNRPMY FT RKPRIYRMYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(1119..1517) FT /gene="AC3" FT CDS complement(1119..1517) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:Q9QGH5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9QGH5" FT /protein_id="AAD53084.1" FT /translation="MDSRTGENITAHQVENSVFIWEVPNPLYFKIMRVEDPAYTRTRIY FT HIQVRFNHNLRKALNLHKAFLNFQVWTTSIQASGTTYLNRFRHLVLLYLHRIGVIGINN FT VIRAVQFATDKSYVNTVLENHEIKFKFY" FT gene complement(1263..1782) FT /gene="AC2" FT CDS complement(1264..1782) FT /codon_start=1 FT /gene="AC2" FT /product="Trap" FT /note="transactivator for AV1 and BV1; DNA-binding protein" FT /db_xref="GOA:Q9QGH4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9QGH4" FT /protein_id="AAD53083.1" FT /translation="MESRFKLKEEYHQSCCAIQVRVPVIKTSWTKKKTELYTTGLFIMR FT SSSPSQPPSIKAQHRIAKRKAIRRRRIDLNCGCSIFYHIKCADHGFTHRGEHHCASGRE FT FRFYLGGTKSPLFQDHAGGRSSIHKDKDIPHPSQVQSQPQESTESPQSIPELPSLDDID FT SSFWDDIFK" XX SQ Sequence 2644 BP; 714 A; 534 C; 585 G; 811 T; 0 other; tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 60 ctcctcaaaa ctcgctcatg caattggaga ctggagtaca atatatacta gtaccctcaa 120 tctcgtgaat tatcagattc acacacgtgg cggccatccg atataatatt accggatggc 180 cgcccgcgcc cctttatttc cgtacacttc cacgtgtcgc tttaatttaa atttgccatg 240 actctttttg actgaccaat gatattgtat ttgacgagcc tagatattcg taaacttggt 300 gactaagtgt tacctttgct tataaattta aattaaattg atgcccattc cacgtgtaag 360 tccagaatgc ctaagcgtga tgcgccatgg cgtcaaatgg cgggaaccta caaggtttcc 420 cgttctggca attattcacc aggaagtgga atgggctcaa aatccaacaa ggccaatgca 480 tgggtcaaca ggcccatgta tagaaagcct aggatatatc ggatgtacag aagcccagac 540 gtgcccaagg gatgtgaagg accttgcaag gtccaatcat atgaacaacg ccatgatata 600 tctcatgttg gtaaggttat gtgtatatcc gatatcacac gtgggaatgg tattacccac 660 cgtgttggta aacgtttttg tgtgaagtct gtgtatattt tagggaagat atggatggat 720 gaaaacatca agcttaagaa ccatactaat agtgttattt tttggttggt ccgtgaccgt 780 agaccatatg gaacccctat ggattttgga caagttttta acatgtttga caatgaaccc 840 agtactgcta cggtcaagaa cgatcttcgt gatcgttatc aagttatgca taggttcaat 900 gcaaaggtga ctggtggtca atatgcaagc aacgaacaag ccttggtaag gcgattttgg 960 aaggtgaaca accatgtcgt ctataaccac caggaagcag gaaaatatga gaatcatacg 1020 gagaatgcat tattgttgta tatggcatgt acacatgcct ctaatcctgt atatgcgaca 1080 ttgaaaattc ggatctattt ctatgattcg ataaccaatt aataaaattt aaattttatt 1140 tcatgattct caagtacagt atttacatat gatttgtctg ttgcgaactg aacagctcga 1200 atgacattgt ttattcctat tacgcctatt ctatgtaaat acaataaaac caaatgtcta 1260 aatctattta aatatgtcgt cccagaagct tgaatcgatg tcgtccagac ttggaagttc 1320 aggaatgctt tgtggagatt cagtgctttc ctgaggttgt gattgaacct gacttggatg 1380 tggtatatcc ttgtccttgt gtatgctgga tcttccaccc gcatgatctt gaaataaagg 1440 ggatttggta cctcccaaat aaaaacggaa ttctctacct gatgcgcagt gatgttctcc 1500 cctgtgcgtg aatccatgat ctgcgcactt gatatggtaa aatatggaac agccgcagtt 1560 caagtcaatg cgtcgtcgac gaatggcttt acgtttggca atcctgtgct gtgctttgat 1620 agaggggggc tgtgagggtg acgaagatcg cattatgaat agtccagttg tgtaaagctc 1680 ggttttcttc tttgtccagg aagtctttat aactggaacc ctcacctgga ttgcacagca 1740 cgattgatgg tattcctcct ttaatttgaa ccggctttcc atatttacag tttgattgcc 1800 agtccttttg tgccccaatt agttctttcc aatgctttaa cttcaaataa ttggggctta 1860 tgtcatcaat gacgttgtat tccactgcgt tggaatagac acgtgaatta aagtccaagt 1920 gaccgctcaa ataattatgt ggtcctaaag cacgagccca cattgtcttt ccggttcgtg 1980 aatcaccctc gacgatgata ctaataggtc tctccggccg cgcagcggaa ccccttccga 2040 aatagtcgtc aacccattct tgcataacaa ccggaacatt gatgaatgat gacaacggaa 2100 atggaggaac ccatggttcc ggcgctttga cgaagatccg ttcgagatta gaacggatgt 2160 tgtgatgttg aaggacgtaa tctttcggtt gttcttcctt caataccgac aaggcagatt 2220 caattgaatc tgcgtttaat gcctttgcat atgagtcgtt ggcagactgc tgacctcctc 2280 ttgcagatct gccgtcgact tggaattgtc cccattcgat tgtgactcca cctttgtcga 2340 tgtatgcctt gacgtctgaa cttgatttag ctccctgaat gttcggatgg aaatgtgctg 2400 acctggttga ggataccagg tcgaacaatc ttttatttgt gcagacgaat ttaccttcga 2460 attgaataag cgcatgaaga tgaggttcac cattttcgtg acgttcctca cagaccttga 2520 tgaatttttt atttgtcgct gtatgaattt tctgaagttg cgaaagagct tcttctttcg 2580 gtatagagca acgaggataa gtgaggaaat agtttttgga ctgaactcta aatctttgag 2640 gtgg 2644 //