ID AF171942; SV 1; linear; genomic RNA; STD; VRL; 3011 BP. XX AC AF171942; XX DT 25-MAY-2000 (Rel. 63, Created) DT 25-MAY-2000 (Rel. 63, Last updated, Version 1) XX DE Pariacoto virus RNA1 protein A and protein B2 genes, complete cds. XX KW . XX OS Pariacoto virus OC Viruses; Riboviria; Nodaviridae; Alphanodavirus. XX RN [1] RP 1-3011 RX DOI; 10.1128/JVI.74.11.5123-5132.2000. RX PUBMED; 10799587. RA Johnson K.N., Zeddam J.L., Ball L.A.; RT "Characterization and construction of functional cDNA clones of Pariacoto RT virus, the first Alphanodavirus isolated outside Australasia"; RL J. Virol. 74(11):5123-5132(2000). XX RN [2] RP 1-3011 RA Johnson K.N., Ball L.A.; RT ; RL Submitted (23-JUL-1999) to the INSDC. RL Microbiology, University of Alabama at Birmingham, 845 19th Street South, RL Birmingham, AL 35294, USA XX DR MD5; 3ebdeafb21bb79852ba37f3b71440b01. DR EuropePMC; PMC110865; 10799587. XX FH Key Location/Qualifiers FH FT source 1..3011 FT /organism="Pariacoto virus" FT /chromosome="RNA1" FT /mol_type="genomic RNA" FT /country="Peru" FT /db_xref="taxon:103782" FT CDS 23..2944 FT /codon_start=1 FT /product="protein A" FT /note="RNA replicase" FT /db_xref="GOA:Q9J7Z2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/Swiss-Prot:Q9J7Z2" FT /protein_id="AAF71691.1" FT /translation="MEEHIPLPSQYESPKALPPRVPSSRWLRSLRPRLANSCLALKIRA FT HESLVKIRLCKPYDAQSRSKIIEKVIERRETRKTLAHQLKDLKLVPVARDHTHGRAAKF FT RTSANIWMNEAMRAAGYEPYNVSMSNHDIERGNRYFYFAKDLTIPYRNDPVSDNTGFVF FT CDVDYYADMEKWMQHFKPMLLYTLVPESLSYHCDDHSFHVNDDRVFFDVRGGASYSHQL FT WDYTGDTICVRGKNKELLVFTIEQKCIQGDPHRRIIFLEPAARVAWPFYKPMKVEVGLK FT RKCMTAGQVNVLYEPIDDKISLSASGSRHTVETTGRTLAAITARMKNKTSPPMVADVER FT ILRDAGDKEACVNAPILFELIPEAKFRVNVVKTTATPTHFQPLGPLRTEDGETCGHAVT FT TTLATAPALLPMRGVNSDVATVNGRVKKPANTVIPFKEYKEYASEFVEFLVPEPGVGHP FT WDTAAVREVQDNRQQKARINMVAATVSTHSSNRLKAFIKAEAYAATNDPRNITTMAPEL FT TLMMSCFTYAFKEKILYEQPWYGPGKTPKQVGRRLQSIAKHGTLESDYSRFDGSISEWL FT QKNVVKAAYMRFFKEHQRTEFQSWFSKVFMQMGTTTAGVRYEAGWGTRSGSPITTDGNT FT MLNAFVVYCCYRKLCHTPAEAWRKLSQGALLTGDDAVLAHENGLEPALLDVVKNLGLKV FT EAKVNGPDDPVSFCGRIYPRLSDCITSFQDPLRTIPKLHLTTNKGVSPEQAAANRAHGY FT LATDKATPIIGTWARRVIELTGDLKVKGATREEQYKLSNAHQQLDPSLIETAMANILGI FT DVGELKALDKAVSEAKALDQMPVVLGNCYKHKIEAVVGGEVVGPGPRVETVEPNHEQSS FT GTPEVVPEMAGHSERRDKSSNPRPGGKAEGLSSKAGKPRVPTRPAADRKAAAGSGNRRG FT PTNGRRPIRDRAPRGGGRPNPGTTPPVSNSETTTTTAVVHASA" FT misc_feature 2598..3011 FT /note="subgenomic RNA (RNA3) is generated during FT replication is co-terminal with the 3' end of RNA1" FT CDS 2622..2894 FT /codon_start=1 FT /product="protein B2" FT /note="synthesised from subgenomic RNA3" FT /db_xref="UniProtKB/TrEMBL:Q9J7Z1" FT /protein_id="AAF71692.1" FT /translation="MSNRAELLKSYQKWQDTASDAINRLILDQVEKRKAYRRKLENLGC FT QLDPLQTERLRQAVATVVDLLTADDPSVIEHPEEEEGLTLAQPHL" XX SQ Sequence 3011 BP; 818 A; 738 C; 818 G; 637 T; 0 other; atgttgtagt acgaaagtac caatggagga gcacataccg ctaccaagtc agtatgagag 60 ccctaaggct ttgccgccta gggtgccgag ctcgcgatgg cttaggtcgt tgcgcccacg 120 gctagccaac tcttgtctcg cgctaaagat ccgtgcgcac gagagtttgg tgaagatacg 180 cttgtgtaag ccatatgatg cccagtcccg gtcgaaaatt atagagaaag tgatcgaacg 240 cagggaaacg aggaaaacgt tggcacatca attaaaggat ttaaaattag taccagtagc 300 acgagaccac actcacggac gtgcggcgaa gtttcgtact tcggcgaaca tctggatgaa 360 tgaggccatg cgagctgctg gatacgagcc ttataatgtg tcaatgagca accacgacat 420 agagagagga aaccggtatt tttacttcgc aaaggatctc accataccct acaggaatga 480 tccggtgtcg gataatacag gtttcgtctt ttgtgacgtg gattactatg cagatatgga 540 aaaatggatg cagcacttta aaccaatgtt gttgtataca ttagtaccag aatcgctctc 600 gtatcactgc gatgaccact ccttccacgt gaatgatgat agggttttct ttgacgtgcg 660 aggcggcgcc agctatagtc atcagctatg ggattacact ggcgacacta tctgtgtgag 720 ggggaagaac aaggaactct tggtcttcac catcgaacag aagtgtatcc agggtgaccc 780 acatcgccga ataattttcc ttgaaccagc agccagagtt gcttggccct tttataaacc 840 gatgaaagtt gaggtagggc tgaagcgcaa atgtatgact gcaggtcaag tcaacgtgtt 900 gtatgagcca atagatgata aaatatcttt gtcagctagt ggctcacgcc acactgtaga 960 gaccacggga cggacgctgg cagcaataac tgcacgaatg aagaataaga cgtcaccacc 1020 tatggtcgcc gatgtagagc gcattttgcg tgatgcaggt gacaaggagg cgtgtgtaaa 1080 cgcgccaata ctctttgagt tgataccaga ggcaaaattc cgggtgaatg tagtcaagac 1140 gactgccaca ccaacccact ttcaacccct tggaccgttg aggaccgagg atggtgagac 1200 ttgtgggcat gctgtgacaa cgaccttggc aacagccccg gcccttttgc cgatgagggg 1260 tgttaattca gatgtggcga ctgtgaatgg ccgggtgaag aagccggcaa acacggtcat 1320 cccattcaag gagtataagg aatacgcatc tgaattcgtg gagtttttgg tgccagaacc 1380 aggcgtcggc catccatggg atacggcagc agtgcgtgaa gtgcaggaca accgccaaca 1440 gaaagcacgc atcaatatgg tagccgccac cgtttctact cactcatcca accggttaaa 1500 ggcctttata aaggctgaag catacgccgc gacgaacgat ccgcgtaaca tcaccactat 1560 ggcacctgag cttacactca tgatgtcatg tttcacgtat gcattcaagg agaagatctt 1620 gtacgagcag ccgtggtacg gcccaggtaa gaccccaaag caagtaggac gcaggcttca 1680 gagtatcgcc aaacacggta cactggagag tgactactca cgctttgatg gctcaatcag 1740 cgaatggctc cagaaaaacg tggtcaaagc cgcatacatg cggttcttca aagagcacca 1800 acgaacggag ttccagagct ggtttagcaa agtcttcatg cagatgggca ccacgactgc 1860 tggtgtgagg tacgaagccg gttggggcac caggagtggt agcccgataa ctactgatgg 1920 caacactatg ctcaatgcgt ttgtggtata ctgttgctac cggaagttgt gccacactcc 1980 cgccgaggct tggaggaagc tcagccaagg tgccctcctg actggcgatg atgctgttct 2040 tgcccatgaa aatgggttgg aaccggcgtt gctggacgta gtcaagaacc tgggccttaa 2100 agtcgaagcc aaagtgaatg gtcctgatga ccctgtatcc ttttgcggac gtatttatcc 2160 acgtcttagt gattgcataa cgagttttca ggatcctttg cgtacaattc cgaagttaca 2220 cctcacaacc aataagggtg tatctccgga acaagcagcg gctaataggg cccacgggta 2280 cttggcgacg gacaaggcga ctccgatcat cggcacttgg gccagacgtg tgatagaact 2340 gacgggtgac ctcaaggtga agggggccac ccgcgaggag cagtacaagt tgtcaaatgc 2400 tcaccaacaa cttgatccat cgttaatcga aactgctatg gctaacattc taggaataga 2460 tgtgggagag ctcaaggctt tggataaagc tgtcagtgaa gctaaggccc tggaccagat 2520 gccggtcgtc ctcggcaact gctacaaaca taagattgaa gcagtagtcg gtggcgaggt 2580 agtcggacct gggcctcgtg ttgagacagt ggaacctaac catgagcaat cgagcggaac 2640 tcctgaagtc gtaccagaaa tggcaggaca cagcgagcga cgcgataaat cgtctaatcc 2700 tagaccaggt ggaaaagcgg aaggcttatc gtcgaaagct ggaaaacctc gggtgccaac 2760 tcgacccgct gcagaccgaa aggctgcggc aggcagtggc aaccgtcgtg gacctactaa 2820 cggccgacga cccatccgtg atcgagcacc cagaggagga ggaaggccta accctggcac 2880 aaccccacct gtgagtaact ctgaaaccac cacgactact gccgtagtcc atgcatccgc 2940 gtaagcggtg cacgtgagca aggtacaacc cgccgtacca acatcctttg ggtaaatccc 3000 aacgcacggc c 3011 //