ID AF170028; SV 1; linear; genomic RNA; STD; VRL; 8018 BP. XX AC AF170028; XX DT 21-JUL-2000 (Rel. 64, Created) DT 27-MAR-2002 (Rel. 71, Last updated, Version 2) XX DE Cherry mottle leaf virus, complete genome. XX KW . XX OS Cherry mottle leaf virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Trichovirus. XX RN [1] RP 1-8018 RX DOI; 10.1007/s007050050690. RX PUBMED; 10881685. RA James D., Jelkmann W., Upton C.; RT "Nucleotide sequence and genome organisation of cherry mottle leaf virus RT and its relationship to members of the Trichovirus genus"; RL Arch. Virol. 145(5):995-1007(2000). XX RN [2] RP 1-8018 RA James D., Jelkmann W., Upton C.; RT ; RL Submitted (19-JUL-1999) to the INSDC. RL Center for Plant Health, Canadian Food Inspection Agency, 8801 East Saanich RL Road, Sidney, BC V8L 1H3, Canada XX DR MD5; 09913329c7eeb2b557c9e13ea835c4a0. XX FH Key Location/Qualifiers FH FT source 1..8018 FT /organism="Cherry mottle leaf virus" FT /host="Prunus avium" FT /strain="SA1162-21" FT /mol_type="genomic RNA" FT /db_xref="taxon:131226" FT CDS 178..5841 FT /codon_start=1 FT /gene="orf1" FT /product="216kDa protein" FT /db_xref="GOA:Q9IMS9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008744" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q9IMS9" FT /protein_id="AAF86666.1" FT /translation="MAFSYRTPQEELLNRLPQTQQEIIGNLQFERLQKEEERRVVSFSY FT ALPEKTKEWFTKSGVYLSPFSFEVHSHPGCKTLENHILYNIVAPHISKYPYIACLSIKA FT NKMSKMERMGAHSVKNYDIFNRLVTSRDKSRYGDLTQPTRVGGPKGSNYFIHDEIHYWS FT RTQLETFLDIKKPRNLWVTMVFPPEILKGYKSSVLPFLYEFEIDKGNLIYMPDGSRSES FT YTQSIENGYLLSTNCISFKNKDGLRKQYSVTLVYTLGSHHVFHIFPNMGLIEDEIRRFG FT PYDLFDVGTLFKKPVRVPIQGFPLSTFKKIFIYMSSLKKPDEQSAVAKLRQLCDAEISI FT EAVFLIQEFAKRIEKGGILSWSCSFFDYLKDHFFDKIPFKDTLEKIGLADDFTRRLINL FT KPLSFDIRADQERKLIAMVFDAVWPDQQSEDYLAAEISKGKKRVINGNAFVNGVSSTKN FT FLLGRAREVQPDYPEDFQSDDLAHTPIRLSGDEDYSRSAPRTPAIFRTARTEYNVLPPS FT SGAPLRIGFERFYGKVEKTEYQKDLESRKRKIALSALDFHVNKTKNKDVESYLAAQGRR FT DEQTRLKNLALTRLSKVKGRVRFVPTCTASKSSEKPIGKQQEEKKNELVPKTGHQDSTT FT LPRDEFINSILKKSEVVREKIEATEVKEFDCSKFILEPVCKHDLMRTNEQVSALVRQSL FT NALCFRPNKGKKSVYVTLDSPMVYFHNSISYPSIEATGLIKDWILSKAEDYGVPFNAAL FT VQVYEKDCILGMHKDNESCYGNHPILTVNVSGKAVFSTDCCGNTMELDSGDELLMPEDF FT QRKFRHGVKSITDGRMSVTLRVHERDFSFEEKRKFIEGKYDCLFVAMAAMISKKPEDIM FT FKCLNTLDRCVMNKGCDLTDLRSICSGYEIKVECQGDCGLVEIGDIGLPLGKLILRGNH FT FTLCSKRRSNLDSLANSSKDVSSLSGGIDYVMVNFIKRLRSIEPDLSRSEIKVDIKRGG FT KLLKCLMEGLTGIVSHNSTHDGWRLLKGVKNSADMRSLIGAMRGNVDGMEKNKLLNELE FT ELNFQKVPIYGIFGFAGSGKSHAIQNLIAKEFRGSQGLMIVCPRKFLAKDWSEKGVEEM FT DIRTFESALKSDIKGKRVFILDEVTLLPRGFTDLLLMKIHMEGNLKSSTIICLGDPLQA FT SYFSQKDDSYLEREPEVKRLFKDGVEYKWFSHRVNKFTARQLSITTTNTFPGIDSQSQI FT YGDVQSAICSIQKTGIDVEIILVASMIEKELYCNLGRTITFGESQGLTFGVGVVVLSEE FT TKLCSDAHIMVAITRFNKGYSFALGSKGTKDEYMRGMKNGLLSRLTSNSGASKDFIMSS FT SSVKLNLSEKLIKTGAGIDEMDREERLSGDPWLKSQIFLGKRFHLREPLGQVVNLEDSA FT IKCHLPICNNQTLYVELSKMRAREDREFKGKDGWSKQFREEAGPNWKSPYKVAQPMNFE FT AIYPRHRMDDDITFYAAIKKRLRFDNVANNYAKFKQSQSRGQYLLKVFLEHVNLKPSRN FT QALLNQCRQEFEETKLNKSAATIGAHSQRSDPDWPLDRIFLFMKSQLCTKFEKRFEDAK FT AGQTLACFQHRILVEFSPWCRYVEKILTACTPDNFYIHQRKNFSELENFAKRFSDGSIC FT VESDYTAFDVSQDHTILAFEVELLRFIGWDEKILNSYIKMKCTLGCRLGGFAIMRFTGE FT FSTFLFNTLANMAFTFCRYEVKKGTPICFAGDDMCALRNLREVSTHEHILDKLSLKAKV FT NRTTVPMFCGWRLCQDGLIKEPCLIYERLCVAIENGRLLDVIDSYYLEFSFAYKLGERL FT FQYLEIEQLNYHQVLARFFVKNSHLLRGSAREGISELSWLSDGDDNDDESSQVKNRRRG FT YSNIWGEKLQSLF" FT CDS 5753..7021 FT /codon_start=1 FT /gene="orf2" FT /product="47kDa protein" FT /db_xref="GOA:Q9IMS8" FT /db_xref="InterPro:IPR001815" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9IMS8" FT /protein_id="AAF86667.1" FT /translation="MTMMMRAHKSKIAEGDIPISGVKSSKVYSDVTPFRRASDLMIHWN FT EFAFKIMPDDIGDGGFRLMSVPVMPKDEIEHFRRERGSANYVHWGALSISIDALFKKQS FT GVTGRCVVFDKRWENCKQSILQTFEFNLDSGSATMITSPNFSVSLDDPNLNDSLCVVVV FT FNDLNFRSESYPVSVRVGNMCRFFDSFLGSEIFKNESNVYIDSSGADLLSYKSFGFGDE FT EEVERLFRFAEVVPTEAIDLTVREIPGSISNLFRKKRVMQYGYGSKSDPRRSKGKRLAG FT VKSLALEGELNTYLNKAGESSNTRGVEATHSKVHRGKGNPFGKSKDSQDVGAIESNEQD FT TYRVDCLSISSESSTPSKIRAGKEVDSEVNFRQHCNPRDVGLNGVYFNHCSGDASDGCG FT SVSVLQSEDDCWVDKTFRVNKRG" FT CDS 6741..7322 FT /codon_start=1 FT /gene="orf3" FT /product="22kDa protein" FT /db_xref="GOA:Q9IMS7" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q9IMS7" FT /protein_id="AAF86668.1" FT /translation="MSARLNLTNKIHTELIAFLSQANRPLHQRSEPEKKLILRSIFANI FT AIQGTSDSTEFISTTVQVMRPTGAEALVSYNPRTIVGLIKLFASTNEDENISRSTFRQI FT CEHFAEYAKNGLIALKLLREYTNLYRKAPSLGGKYPELCFDFNGGLDMIDLNNEQRKVI FT TNFNQRLLQTEIAKGEAEANMSAVSTNLCV" FT CDS 7470..7877 FT /codon_start=1 FT /gene="orf4" FT /product="15kDa protein" FT /db_xref="UniProtKB/TrEMBL:Q9IMS6" FT /protein_id="AAF86669.1" FT /translation="MSFNPKNNKDDRRIFSLCLSMMRNGIPNGVLAMINMKARCVINSE FT KVKVNKLCGKSSLSKGRRAARLAICSFCYRTNCTSGYRCLKSRNGINARFEKAEWVKYG FT KSSSLFESETPICAPSLRNHIEDEMNRVRHS" XX SQ Sequence 8018 BP; 2503 A; 1385 C; 1894 G; 2236 T; 0 other; ggctaccatc gggcatatag gatactgaca cgtatacact caagtcgtga gtgagcagat 60 agacgtaacg cacctatcgt ggtctaggac cgtccaatta aatttggaat caaatcaaag 120 aaaattcatg aaaatctagt ttctttgttt tacacaacta cttttgtagg tattactatg 180 gctttctcat atagaacgcc acaggaggag cttctgaaca ggttacccca aacccaacag 240 gagataattg gcaatcttca atttgaacga ttgcagaaag aggaagagag gagagtggtt 300 agcttctctt acgctttgcc agagaaaact aaggagtggt tcactaagtc aggggtctat 360 ctctcaccct tttcttttga agtgcattct catcctggtt gcaaaactct ggagaaccac 420 atattatata atatagtggc cccgcacata tccaaatatc cctacatagc ctgcttgagt 480 attaaagcaa ataaaatgag caaaatggaa agaatgggag ctcatagtgt taagaattat 540 gatatattta acaggcttgt aacttcaagg gataagtctc gctatggaga tcttacccaa 600 ccaactaggg ttggaggtcc aaagggttcc aattatttca ttcatgatga aattcactat 660 tggtccagaa ctcagctaga aactttcctt gatataaaga aaccacgtaa tctgtgggtc 720 actatggtgt tcccccctga aatattgaaa ggttacaaga gttctgttct gccttttttg 780 tatgaatttg aaatagacaa gggtaacctc atctatatgc ccgatggtag ccgatctgaa 840 agttatactc aatcaattga aaatggttac ctgcttagca caaactgtat aagcttcaag 900 aataaagatg gtttgaggaa gcagtacagt gtcacattgg tctatacctt gggctcacat 960 catgttttcc atatattccc aaacatgggt ttgattgagg atgagataag gagatttggt 1020 ccatatgatc tctttgatgt gggaactctc ttcaaaaaac cagtgagagt accaattcag 1080 ggcttccctc tcagcacttt caaaaagata tttatctaca tgagttctct taagaagcct 1140 gatgagcaat ccgccgtggc aaagctaaga caactttgtg atgctgaaat ttcaattgaa 1200 gctgtcttcc tcattcaaga atttgctaaa agaattgaga aagggggtat tttaagttgg 1260 tcatgctctt tttttgacta cctcaaggat catttttttg acaaaattcc tttcaaggac 1320 actctggaga aaattgggtt agcagatgat ttcacaagga gattgattaa cctcaagcct 1380 ctatcctttg acataagagc cgatcaggaa aggaagctta ttgctatggt gttcgatgca 1440 gtttggcctg atcagcaaag tgaagactat cttgctgcag aaatctctaa aggaaagaag 1500 agggtgatca atggcaacgc atttgtgaat ggagtatcaa gcacaaaaaa ctttttgctt 1560 gggagagcta gggaggtgca gccggattac ccagaggatt ttcagtctga tgatcttgcc 1620 cacaccccaa ttagattatc aggagatgag gactactcaa gatctgcacc aagaactcct 1680 gctattttca gaacggcccg aactgaatat aatgtgcttc cccctagttc aggagctcca 1740 ttacgcattg gtttcgagag attctatggt aaagtggaga aaaccgagta ccagaaggat 1800 ctagagtcaa ggaaaagaaa gattgctctc tctgcattag attttcatgt gaataagaca 1860 aaaaataaag acgtggagag ctatcttgct gctcaaggga gaagggatga gcagactagg 1920 ttgaagaatc tggccctcac tagactctcc aaagtcaaag gaagagttag atttgtcccc 1980 acctgcactg cttcaaaatc aagtgagaaa ccaattggaa agcagcagga ggagaagaag 2040 aatgaacttg ttcccaagac aggtcatcag gattccacaa ctttaccgag agacgagttc 2100 attaattcaa tattgaaaaa gagtgaagtt gtgagagaaa agattgaggc tactgaagtg 2160 aaagaatttg attgttcgaa gtttattttg gagccagtct gcaaacatga tcttatgagg 2220 accaatgagc aggttagtgc tttggtaaga caatcattga atgcattgtg cttcagaccg 2280 aacaaaggaa aaaaatccgt ttatgtcact cttgattcac cgatggtata ctttcacaat 2340 tcaatttcct acccatcaat tgaggcaacc gggcttatta aagattggat cctgagtaaa 2400 gctgaggatt atggtgtccc attcaatgcg gctcttgtgc aagtgtacga aaaagattgt 2460 attctaggga tgcacaagga taatgaatct tgttacggga atcatccaat tctaactgtc 2520 aatgttagtg ggaaagcagt cttctccact gactgctgtg gcaatacaat ggaacttgat 2580 tcaggggatg aacttcttat gccagaggat ttccaaagaa aatttaggca tggggtgaag 2640 tcaatcactg acggtagaat gagtgtcaca ctcagagtgc atgaacgaga cttctctttt 2700 gaggaaaaga gaaaatttat agaaggtaaa tatgattgcc tctttgttgc aatggccgca 2760 atgatttcaa aaaaaccaga ggacataatg tttaaatgtc ttaacactct tgacagatgt 2820 gtgatgaata agggatgtga tctcactgac ctgaggtcca tatgcagtgg atatgagatc 2880 aaagttgaat gtcagggtga ttgtggtttg gtggagattg gggatattgg acttcccctt 2940 ggcaagttga ttttgagggg gaatcatttc accttgtgtt caaagcgaag atcaaatctg 3000 gattccttgg ccaactcctc aaaagatgtc tcaagtttgt ctggaggtat tgactatgtc 3060 atggtgaact tcatcaaaag attgagatca attgaacctg acctctccag atctgagatc 3120 aaggttgaca tcaaaagagg tggaaagtta ctcaaatgtc ttatggaagg tcttactgga 3180 atcgtttccc acaactctac ccacgatggt tggagattgc ttaaaggggt caagaattca 3240 gccgacatga ggtcattaat aggggcgatg aggggcaatg ttgatgggat ggaaaagaac 3300 aaacttctga atgaacttga agagcttaat ttccagaaag tccccattta tggaatattt 3360 ggatttgccg gctcagggaa gagtcatgct atacaaaacc tcattgctaa agagttcaga 3420 ggatctcaag gtcttatgat tgtttgtcct agaaagtttc tagccaagga ttggagtgag 3480 aaaggtgtgg aggagatgga cataagaaca tttgagagcg ctctaaaatc agacatcaag 3540 ggtaaaaggg tatttatact tgatgaggtg actttgctcc ctagaggttt cactgatctt 3600 ttgctgatga agattcatat ggaaggaaac ctaaagagtt caaccatcat ttgcttagga 3660 gatcctttac aagctagtta ctttagccag aaggatgatt cctatcttga gagagagcct 3720 gaggtcaaaa ggttgttcaa agatggtgtt gaatacaagt ggttcagtca tagggttaac 3780 aaatttacag ctaggcagct gtccataacc acgacaaaca ctttccctgg gattgatagc 3840 cagagtcaga tctacggaga tgttcagagt gcaatttgct ccattcagaa aactggaatt 3900 gatgtggaga taatattggt tgctagcatg atagagaaag agctatattg caatttgggc 3960 agaactatca cgtttggaga atctcaaggt ctcacatttg gtgttggggt tgttgtcctt 4020 tctgaggaga caaagctctg ctctgatgcc catataatgg tcgctatcac aaggttcaac 4080 aaaggctact ctttcgctct gggaagcaag ggtacaaaag acgaatacat gagaggcatg 4140 aagaatggcc ttttaagtag gttgacttca aactctgggg caagtaaaga cttcataatg 4200 agttcttcat cagtgaagct gaatttgagc gagaaattaa tcaagaccgg tgctggtatt 4260 gatgaaatgg acagggagga aagattgtct ggtgaccctt ggcttaagag tcaaattttt 4320 cttggaaaaa gatttcattt gagggaaccg ctaggtcaag ttgtcaatct agaggactcg 4380 gcaattaaat gccatttgcc tatatgcaac aatcagactc tttacgtgga gctgtcgaaa 4440 atgagagcaa gagaggatag ggaattcaaa ggaaaggacg gttggtcaaa acaattcaga 4500 gaggaggcag gtccaaattg gaaaagtcca tataaggtgg cacagcccat gaattttgag 4560 gcgatatacc ccagacatag aatggatgat gacatcacct tttatgctgc aatcaagaag 4620 aggctcaggt ttgacaatgt tgcaaataac tacgccaaat tcaaacaatc gcaatccagg 4680 gggcaatatt tgctcaaggt tttcctagaa catgtgaacc taaagccaag tcgaaatcaa 4740 gctctgctca atcaatgcag acaggaattt gaagaaacca agttgaacaa aagtgcagcc 4800 acgataggtg cccattccca gaggtcagat ccagactggc cattggatag gatattcctg 4860 ttcatgaaat cgcaactgtg cacaaaattt gaaaagaggt ttgaagatgc gaaggctggt 4920 caaacccttg catgctttca gcacagaata ctggtggaat ttagcccttg gtgtaggtat 4980 gtagagaaga ttttaactgc atgcacgcca gacaacttct acatacacca gaggaaaaat 5040 ttttcggaac ttgaaaactt tgccaagagg ttttctgatg gatcaatttg tgtggagtca 5100 gattacacgg catttgacgt ttcccaagat catacaatac ttgcttttga agttgagcta 5160 ctaagattca tagggtggga tgagaagatc ttgaacagct acattaaaat gaaatgcaca 5220 ctagggtgta gacttggagg ctttgctata atgagattca caggggagtt ttccaccttt 5280 ttgttcaaca ctcttgcgaa tatggcattt accttctgca ggtatgaagt caaaaaaggc 5340 accccaatat gcttcgctgg ggatgacatg tgtgctctga gaaatttgag agaggtttca 5400 acgcatgagc atattttgga caagttgagt ctcaaggcca aagtaaacag aacgaccgtt 5460 ccaatgtttt gtggatggag gttatgccag gacggattga taaaagaacc atgtttaatt 5520 tacgagaggc tttgcgtggc catagaaaac ggaagattgc ttgatgtcat agattcgtat 5580 tacctggaat tttcatttgc ctacaaatta ggtgagcggc tatttcagta tcttgaaatt 5640 gaacaactga attatcatca agttttggcc agattctttg taaaaaatag ccatcttttg 5700 agaggaagtg caagggaagg gatctctgaa ttgagctggt tatctgacgg ggatgacaat 5760 gatgatgaga gctcacaagt caaaaatcgc agaaggggat attccaatat ctggggtgaa 5820 aagctccaaa gtctattctg acgtgactcc gtttagaagg gcctctgatc tcatgataca 5880 ttggaatgag tttgcattca agatcatgcc tgatgacatt ggggatggag gctttagact 5940 catgtctgtt cctgtcatgc ctaaagatga aatagagcat tttagaaggg aaagaggatc 6000 tgccaattat gttcactggg gggctttatc aatatcaatt gatgcccttt tcaaaaagca 6060 gtcaggggtc acaggaaggt gcgttgtgtt tgacaaaaga tgggaaaact gcaagcaatc 6120 catactccaa acttttgagt tcaatttgga tagcggctca gccacgatga taacttcacc 6180 caatttctca gtctcacttg atgatcctaa tcttaatgat tcactctgtg ttgttgtggt 6240 attcaatgat ttgaatttca gaagtgaaag ttacccagtg agtgtcaggg ttgggaatat 6300 gtgcaggttc tttgacagtt ttttgggttc tgagattttc aagaatgaat caaatgtcta 6360 catagattcc tcaggtgctg acctactttc ttacaaatct tttggatttg gtgatgaaga 6420 agaggttgag agattattta gatttgctga ggttgttcct acagaggcaa ttgacttgac 6480 ggtaagagaa atccccggca gcatatccaa tttgttcagg aaaaagaggg tcatgcaata 6540 tggatatggg tcaaaaagtg atccaagaag gtctaaaggg aaaagattgg ccggagttaa 6600 gtcgctggcc ttggaaggtg aattgaatac atatttaaac aaagctggag aaagtagtaa 6660 cacaagagga gttgaagcaa cacatagcaa ggttcacagg ggcaaaggga acccttttgg 6720 aaaaagtaag gactcacagg atgtcggcgc gattgaatct aacgaacaag atacataccg 6780 agttgattgc ctttctatct caagcgaatc gtccactcca tcaaagatca gagccggaaa 6840 agaagttgat tctgaggtca attttcgcca acattgcaat ccaagggacg tcggactcaa 6900 cggagtttat ttcaaccact gttcaggtga tgcgtccgac gggtgcggaa gcgttagtgt 6960 cctacaatcc gaggacgatt gttgggttga taaaactttt cgcgtcaaca aacgaggatg 7020 aaaatatttc taggagcact ttcaggcaaa tttgtgaaca ttttgctgaa tatgccaaaa 7080 atggtttgat agcactgaag ttactcaggg aatacacaaa tctgtatagg aaggcaccta 7140 gtcttggtgg aaagtatccg gagttatgct ttgactttaa tggaggtctt gatatgatag 7200 atctgaataa tgaacagaga aaggtgatca cgaatttcaa tcagcgtctt ttgcaaactg 7260 agatcgcaaa aggcgaggct gaagcaaaca tgtctgcggt ctcgacaaat ctctgtgttt 7320 agagtgagac ggattaggtt agcttttatg tgtgtgaaga agtgatgttt agggtaaggt 7380 ctgtcttttt gcattggatt tgcttgtttc aataatcgat ttgactcttc agggttggtt 7440 cgatctaggt cttgttgaaa ttgtcgaaga tgtcattcaa tcccaagaac aacaaggatg 7500 acagaaggat attctccttg tgtctttcta tgatgagaaa tgggatacca aatggggttt 7560 tggcaatgat aaacatgaaa gctagatgtg tgatcaactc tgagaaggtc aaagtgaata 7620 aattgtgtgg aaaaagttcc ctatctaaag ggagaagggc agctagatta gctatctgtt 7680 ccttttgtta tagaacaaat tgtaccagtg gttatagatg tttgaaatct agaaatggta 7740 tcaatgctag attcgagaag gcggagtggg tcaaatacgg gaagagtagc tctctatttg 7800 agagtgagac tccaatttgt gctccatcct tgcgaaatca cattgaggat gaaatgaatc 7860 gagtaagaca ctcgtagtct tgtggatctg actataaaag acacacagtc atacactgtt 7920 catgtatggt ttcctggaac taaccagtgg tagtgcttta acttatatca aagtagacta 7980 tagactttta aatattttac tataaaaaaa aaaaaaaa 8018 //