ID AF157029; SV 1; linear; genomic RNA; STD; VRL; 5899 BP. XX AC AF157029; XX DT 28-JUL-1999 (Rel. 60, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Sugarcane yellow leaf virus complete genome. XX KW . XX OS Sugarcane yellow leaf virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5899 RX DOI; 10.1006/viro.1999.0162. RX PUBMED; 10725208. RA Moonan F., Molina J., Mirkov T.E.; RT "Sugarcane yellow leaf virus: an emerging virus that has evolved by RT recombination between luteoviral and poleroviral ancestors"; RL Virology 269(1):156-171(2000). XX RN [2] RP 1-5899 RA Moonan F., Molina J.J., Mirkov T.E.; RT ; RL Submitted (08-JUN-1999) to the INSDC. RL Dept. Plant Pathology, Texas A & M Agricultural Experiment Station, 2415 RL East Highway 83, Weslaco, TX 78596, USA XX DR MD5; e8828190b992ada910b7d45cf7b471cb. DR EuropePMC; PMC2583970; 18937850. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5899 FT /organism="Sugarcane yellow leaf virus" FT /host="Saccharum sp. cultivar CP65-357" FT /strain="A" FT /mol_type="genomic RNA" FT /country="USA: Florida" FT /db_xref="taxon:94290" FT 5'UTR 1..66 FT CDS 67..837 FT /codon_start=1 FT /product="ORF 0" FT /function="unknown" FT /note="similar to ORF 0 deduced peptide of beet western FT yellows virus" FT /db_xref="InterPro:IPR021411" FT /db_xref="UniProtKB/TrEMBL:Q9QQP0" FT /protein_id="AAD45682.1" FT /translation="MLFNEFSVEGIKFRAHESTSPVFRGEVSRCLTYYRVFACKWVELT FT YQDPLTRHLVQNYYGPNTPVYNWLEHIRLIVVTMVPILLLPDTTIGRHIHIKRQYLQSV FT LLWLARNKLYYRVKRCRSKRFVLEQDHIGPELFRTQLLQYAGLDVFQDVARLQDFLERG FT YDTFRSVLGVHLLEHERFVSRILEQPVMEPDQAVRLCFHYHNALDHDDDDSGLETDFDN FT LSLGRPYINGLPPNEKIIFIHSNLVGRSTYSHDI" FT CDS 242..2194 FT /codon_start=1 FT /product="multifunctional protein" FT /note="predicted protease cleavage sites produce three FT peptide products, with significant similarity to FT Polerovirus ORF 1 peptide sequences" FT /db_xref="GOA:Q9QQN9" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:Q9QQN9" FT /protein_id="AAD45683.1" FT /translation="MAPTLPFTTGWSTFALLLSLWCLFCSCQTQPLDGTSILRDSTSSL FT SFYGLPATNSTIELRDAVPSGLYSSKITSAPNFSELSYSSMLGWMFFKMWRDCKTFSRE FT ATTLSDRFLEYTFSNTKGLLVEFLNNLLWNLIKLYVYAFTIITRLIMTMTILAWKPILI FT ICLLVVLTSMVYHLMRKLFSFIQIWWVVAPILMIYRTVTYIHRRLFASRGDEKMVQGFK FT SFAVPMSPPGHSVLEIVHPDDSHMGYASCVRLKNGEEALMTSVHCISDSFKVRSFRNGI FT KIPLTEFQVLLPANAMDIVLLRGPPEWKSILGAKAAHFTPVNQLNKGAVSFFIFDKEWM FT MHNAKVTGTDGFYATVLSNTEKGYSGAPYWNGKSIVGVHKGHVYGDDSKNYNLMSPIPP FT VKGLTAPNFVYESPSLQGDVFSDADVSDIADYAEEVYEKTLAEPKVWKPASGKYWWEMA FT EEEDDFVVEAKSPPPDKPVENATAKEQTPASTVEKAMVADQPTPDQGNEPSGADHLKTP FT ESTPLKQDESTKELLNNIVSQLIQKIDLSSIATRVEEKLLRQAQNKQQQNGGKKSPRKR FT KTSNTSSKPHTNGKSPPVTSQGSGNAANSPRYTIPQNRRAHNGESASSQSTQKWRPKSP FT VSGGPPSAPKPKRQV" FT mat_peptide 242..1474 FT /product="serine protease" FT /note="N terminal cleavage product of ORF1" FT mat_peptide 1475..1582 FT /product="VPg genome-linked peptide" FT /note="cleavage product of ORF1" FT mat_peptide 1583..2191 FT /product="C-terminal cleavage product ORF1" FT CDS <1735..3453 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF 2; produced by predicted -1 translational FT frameshift of ORF 1 gene product; similar to Polerovirus FT ORF 2 (RdRp) deduced peptide sequences." FT /db_xref="GOA:Q9QQN8" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9QQN8" FT /protein_id="AAD45684.1" FT /translation="SADSRPGKRAKWRRPLKNTGIHPAQARRIYKRVAQQHRLAVDSKD FT RPELHCNEGGGETAASGPEQTAAERREEVAQKTQDLEHFFQAAYKWEESTSDIPGFRKC FT GKLPALYHPPKPKSTQWGERIISEHPEMASKVAGFGWPSFGAQAEETSLRLQAARWLKR FT AESAEKPTEKQRKLVIDRVVKAYEPCRTNAPHTSSSGSLIWSDFLKDFKEAVNSLELDA FT GIGLPYKLLHKDTHRQMVEDPKFLPLLTRLTWNRLQKMSQVDFQEMTPEQLVREGLCDP FT IRLFVKGEPHKQAKLDEGRYRLIMSVSLVDQLVARVLFQAQNKREIALWRAIPSKPGFG FT LSTDREAREFIESLSKTVGCSPAEVIHGWRDKIVPTDCSGFDWSVADWMLEDDMEVRNX FT LTINNNELTRRLRACWLKCITNSVICTSGGVLYAQTHPGVQKSGSYNTSSSNSRIRVMA FT AFHCGADWAIAMGDDALESPNSNINAYQKLGFKVEVASQLEFCSHVFEQEDLARPLNVN FT KMLYRLIFGYNPACGNAEVLCNYLQAVASVLNELRHDPQLVATLHEWLVPGAATK" FT CDS 3648..4238 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF3; similar to Luteovirus ORF3" FT /db_xref="GOA:Q9QQN7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9QQN7" FT /protein_id="AAD45685.1" FT /translation="MNTGANRSRRNVRRRANRRRQTRPVVVVRAPPGPRRVRRRRARVG FT GNAVRGPGGRSNRDVLTFTVDDLKANSTGILKFGPNLSQYAAFNNGLLKAYHEYKITSL FT TIQYNSCSSDATPGAIALEVDTSCSQTTTGSKITSFPVKRNAKKVFPAPFIRGKDFMTT FT SADQFWLLYKGNGDSSLAGQFVCRFECLFQNPK" FT CDS 3679..4131 FT /codon_start=1 FT /product="putative movement protein p17" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:Q9WI47" FT /protein_id="AAD45686.1" FT /translation="MSEDALTVVDRLGQWSWSGLPQDLDEYDDVEHVLEETLCEDREEE FT ATGMFSLSRLTISKPTQPGSSNSDRTYLSTQRSTMAYSKPTMSIKSQVSLFSITHAPPT FT QLQVQSHLKWIHPAPKQQQAPRLLASPSRGTPRKSSRPPSSGGKIS" FT CDS <4239..5678 FT /codon_start=1 FT /product="putative aphid transmission factor" FT /note="ORF5; ORF 5; produced by translational readthrough FT of TAG stop codon of ORF 3; similar to putative aphid FT transmission factor located on RNA 1 of pea enation mosaic FT virus, an Enamovirus; Luteovirus-Polerovirus derived RNA FT sequence recombination site, of projected sugarcane FT yellowleaf virus evolutionary history, is predicted to FT occur within RNA sequence that encodes for the deduced FT N-terminal proline-rich region" FT /db_xref="GOA:Q9QQN6" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:Q9QQN6" FT /protein_id="AAD45687.1" FT /translation="VGDAPPTPTPTPTPPAPTPAPAPKYFGYQGVPNNIVKTRGNSEYL FT DVGPLENVTMYLWKDESWSIEQLSAGYRVNNRERAIPFVLFPVDKGKYSVFIQCEGFKA FT VKAKGGTNDGKMSGFLCDNANLAGWRAYAYSGCTISNYRTSDSNVPGHPDMKVNGGSFT FT DQLVERDFSCSFHLEVPQQGYFGLEAPPIEKSDHFNFVVSYANFTDKILEWGSISVAID FT EVNDGAYSRSKWDKTTAMSARLPTQVSAPSEVYTPEAPEQPTNEGTESMPPAPNPALGP FT DNPATKEPTPKIVDNPDPKVLNWLNNQRDKPVVEEVLRESPIYAPPPPPSLVPTHADTL FT RQADKVRRALMANASRSASPPPTNTEVPVLGATDTASLSGSLRGGSLRGNLGSRPSLPR FT VADSPPRSVSPARSETSTLQGGSLSGGSLRGGNLQALPEATREQRREYERLKNSQGKTV FT AKAHAKEHGYKPPKSSSSLFG" FT 3'UTR 5679..5899 XX SQ Sequence 5899 BP; 1576 A; 1537 C; 1418 G; 1358 T; 10 other; acaaaatata tcgggaggga aacccctgat atatttggac caagcctctg acttgtaaac 60 tgctctatgc ttttcaacga attctctgtt gagggaatta aattcagagc acacgaaagc 120 acttcacccg tctttcgtgg ggaggtttcc aggtgtttga cctactacag agtcttcgcc 180 tgcaagtggg ttgagttgac ctatcaagat ccactcacac gccatttagt acaaaattac 240 tatggcccca acactcccgt ttacaactgg ctggagcaca ttcgccttat tgttgtcact 300 atggtgccta ttctgctcct gccagacaca accattggac ggcacatcca tattaagaga 360 cagtacctcc agtctgtcct tttatggctt gcccgcaaca aactctacta tagagttaag 420 agatgccgtt ccaagcggtt tgtactcgag caagatcaca tcggccccga acttttccga 480 actcagctac tccagtatgc tgggttggat gtttttcaag atgtggcgcg attgcaagac 540 tttctcgaga gaggctacga cactttccga tcggttcttg gagtacacct tctcgaacac 600 gaaaggtttg ttagtcgaat tcttgaacaa cctgttatgg aacctgatca agctgtacgt 660 ttatgctttc actatcataa cgcgcttgat catgacgatg acgattctgg cctggaaacc 720 gattttgata atctgtctct tggtcgtcct tacatcaatg gtctaccacc taatgagaaa 780 attattttca ttcattcaaa tttggtgggt cgtagcacct attctcatga tatataggac 840 cgtcacgtac attcacagaa ggttgttcgc ttcacgtggg gacgagaaaa tggtccaagg 900 tttcaaaagc tttgccgtcc ccatgtcacc accaggacac tcagtgcttg agatagtaca 960 ccccgatgat tctcacatgg gatatgcatc ctgtgttcga ttgaaaaacg gggaagaggc 1020 tctcatgaca tccgttcact gcataagcga ttctttcaag gttcgctcgt tcaggaatgg 1080 tatcaagatc cctctaacgg aattccaagt gctgttgccc gccaatgcga tggacattgt 1140 tcttcttcga ggcccacctg agtggaagtc catccttgga gccaaagcag cccacttcac 1200 tccagtcaac cagctcaaca aaggggctgt gtctttcttc attttcgaca aggagtggat 1260 gatgcacaac gcaaaagtta caggaactga tggtttttat gccacagttc ttagtaacac 1320 tgagaagggc tacagtggcg ccccctactg gaatgggaaa tctatagtag gggtgcataa 1380 agggcacgtg tacggagacg attccaagaa ttacaatctt atgtcgccga ttccccctgt 1440 caaggggtta acggcgccta attttgtgta tgagtctccg tctctgcaag gagatgtctt 1500 tagcgacgcc gacgtttcag acattgctga ttacgccgag gaggtgtatg agaaaaccct 1560 tgcagagcct aaagtgtgga aacctgccag cggcaaatac tggtgggaaa tggctgaaga 1620 agaggatgat tttgtcgttg aggcaaagtc acctccccct gataaacctg ttgagaacgc 1680 tacagcaaaa gagcagactc cagcttcgac tgtcgagaaa gctatggttg ctgatcagcc 1740 gactccagac cagggaaacg agccaagtgg cgccgaccac ttaaaaacac cggaatccac 1800 cccgctcaag caagacgaat ctacaaaaga gttgctcaac aacatcgtct cgcagttgat 1860 tcaaaagatc gacctgagct ccattgcaac gagggtggag gagaaactgc tgcgtcaggc 1920 ccagaacaaa cagcagcaga acggagggaa gaagtcgccc agaaaacgca agacctcgaa 1980 cacttcttcc aagccgcata caaatgggaa gagtccacca gtgacatccc agggttcagg 2040 aaatgcggca aactccccgc gctataccat cccccaaaac cgaagagcac acaatgggga 2100 gagcgcatca tctcagagca cccagaaatg gcgtccaaag tcgccggttt cgggtggccc 2160 tccttcggcg cccaagccga agagacaagt ctgagactcc aagcggcacg ctggcttaaa 2220 cgagctgagt cagcggaraa gccgacagaa aaacaacgca agctcgtcat tgatcgtgtg 2280 gtyaaggcat atgaaccgtg tagaacyaat gccccacaca ccagctcctc tggcagcctc 2340 atctggtccg acttcttgaa agatttcaag gaggctgtca actcactaga actcgacgca 2400 ggaataggtc tcccatacaa acttcttcac aaagacaccc atcgtcagat ggttgaagac 2460 cccaaattcc tgccgctcct gacgcgattg acctggaacc gtttacagaa gatgtcccag 2520 gttgatttcc aggagatgac tcctgaacaa ctagtgaggg aaggattgtg cgatccgatt 2580 cgtttgttcg tcaaaggaga accgcacaag caggcgaagc ttgatgaagg gcgctaccgc 2640 ctcatcatgt cagtctcgct ggtagatcaa ctggtagccc gggttttgtt tcaagcacaa 2700 aacaaaagag agatagcttt gtggagagct atcccttcaa agcccggttt yggcttatcc 2760 acagacaggg aagcacgcga attcatygaa tccctgtcca agacagtagg gtgttcccca 2820 gcagaagtca ttcatggctg gagggacaag atcgtaccca ccgactgttc cggttttgac 2880 tggtcagtcg ccgactggat gctcgaagac gacatggaag tgagaaatyt tctcacwatc 2940 aayaacaacg agctaacccg ccgcctcagg gcgtgctggt tgaagtgcat cacaaactct 3000 gtgatttgca crtccggcgg tgtcttgtac gcccaaactc atcctggagt gcaaaaatct 3060 ggatcttaca acacgagttc atccaattcc aggattcgag taatggccgc ttttcattgc 3120 ggcgcagatt gggcgatagc catgggagac gatgcacttg agtctccaaa ctccaacatc 3180 aacgcgtatc aaaagttggg gtttaaagtc gaggttgcct cacagctaga attttgctca 3240 cacgtctttg agcaggagga cctcgccagg ccgttgaacg taaacaaaat gctttatcgt 3300 ttgatctttg gatacaatcc ggcctgtggc aacgcggagg tattgtgcaa ttacctccaa 3360 gctgtggctt ctgttctcaa cgagcttcgc catgatccac agctagttgc taccctccat 3420 gagtggctgg tccctggcgc cgccacaaaa taaatacgga ggggcatccc gagccaccat 3480 ataggttgca agagtggaac gggaagtcct atagataagc cgcgcgattc tggattacaa 3540 acttctagcg ggagttctca tcggtgttct catcgcaatt cccctagtga tcatagcggc 3600 ttacctgata ttcctcaaaa tcagtgcaca catccgagcg atagtgaatg aatacgggcg 3660 ctaaccgctc acgaaggaat gtcagaagac gcgctaaccg tcgtagacag actcggccag 3720 tggtcgtggt ccgggctccc ccaggaccta gacgagtacg acgacgtaga gcacgtgttg 3780 gaggaaacgc tgtgcgagga ccgggaggaa gaagcaaccg ggatgttctc actttcacgg 3840 ttgacgatct caaagccaac tcaaccggga tcctcaaatt cggaccgaac ttatctcagt 3900 acgcagcgtt caacaatggc ttactcaaag cctaccatga gtataaaatc acaagtctca 3960 ctattcagta taactcatgc tcctccgacg caactccagg tgcaatcgca cttgaagtgg 4020 atacatcctg ctcccaaaca acaacaggct ccaagattac tagcttcccc gtcaagagga 4080 acgccaagaa agtcttcccg gcccccttca tcagggggaa agatttcatg actacgtcag 4140 ctgaccagtt ttggttgctg tacaaaggga atggagactc gagcctagca ggacaattcg 4200 tctgccgatt tgaatgcctt ttccagaatc ccaaataggt aggcgacgct cccccaacac 4260 ccaccccaac accaacccca cccgctccga ccccggcacc ggctcccaag tattttggat 4320 accaaggagt gccgaacaac atcgtgaaaa caagaggaaa ctctgaatat ctagatgtgg 4380 gtccgctcga aaatgtgacc atgtatcttt ggaaagacga atcgtggagc attgagcaac 4440 tgtcagccgg atatcgcgtt aacaatcgag aacgtgccat accctttgtc ctctttccag 4500 tggataaagg taaatactcc gtgtttatac aatgtgaggg ctttaaggca gttaaagcca 4560 aaggaggcac gaacgacggc aagatgagcg ggtttctttg tgacaatgca aatctcgcgg 4620 gttggcgagc atacgcatat agtgggtgta caatctctaa ttatagaaca tcggactcta 4680 atgttcctgg tcatccggac atgaaagtca atggtggatc ttttaccgac caattggtcg 4740 agagagattt ttcttgttca tttcaccttg aggtgcctca acaaggctat tttggcttag 4800 aggccccacc cattgaaaag agtgatcatt tcaattttgt ggtgtcttac gctaacttca 4860 ctgataaaat cctggaatgg ggttcaatct ctgtagcgat agacgaggtg aatgacggag 4920 cgtatagtag atcaaaatgg gataagacta ctgcaatgag tgctcgtttg ccgactcagg 4980 tgagcgcccc ctctgaggtt tacaccccgg aagcacctga acaaccgact aacgaaggga 5040 cggagagtat gcctccagcc ccgaacccgg cactgggacc ggacaaccca gcaaccaaag 5100 aacccacgcc caaaatcgtg gataatccgg acccaaaggt actcaactgg cttaacaacc 5160 agcgagataa acctgtggtg gaagaggttt tgcgtgaatc tccgatttat gctcctccac 5220 cccccccgtc tctagtcccg actcatgccg acactttaag acaggcggat aaggtccgga 5280 gagctctcat ggctaacgct tcacgttcag cctcacctcc ccccacgaac accgaagttc 5340 ctgttcttgg agccactgac accgcttctc ttagtggatc attacgcggt ggctccctca 5400 ggggtaattt gggttctcgc ccctctcttc cgagggtcgc tgacagccct ccccgttctg 5460 taagtccggc tcgttccgag accagcactt tacagggcgg ttccctgagc ggtggttctt 5520 tgagaggtgg taacctccag gctttgcctg aggccacaag agagcaaagg agggaatatg 5580 aacgtctcaa gaattcacaa gggaagacgg tagcaaaagc ccatgctaaa gaacacggtt 5640 acaagccacc gaaatcttcc tcctccttgt ttggttgagt gtcgagccac tataacgctc 5700 cccgccccgg gacacgggac tccaatcatg agtttaaact gagctctttc cacgagccta 5760 aactggagaa ctccgcaaag ttctaaaact atgcagatgg gctagcgacc cagctcttcc 5820 attgattttc aggatctttg gaagcccaag ctaaaggggt ggaatacagg gaggcactgc 5880 ctcccgtata tcctagtwa 5899 //