ID AF155806; SV 1; linear; genomic DNA; STD; VRL; 2800 BP. XX AC AF155806; XX DT 21-FEB-2000 (Rel. 62, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE South African cassava mosaic virus segment A, complete sequence. XX KW . XX OS South African cassava mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2800 RX PUBMED; 11125158. RA Berrie L.C., Rybicki E.P., Rey M.E.C.; RT "Complete nucleotide sequence and host range of South African cassava RT mosaic virus: further evidence for recombination amongst begomoviruses"; RL J. Gen. Virol. 82(Pt 1):53-58(2001). XX RN [2] RP 1-2800 RA Berrie L.C., Rey M.E.C., Rybicki E.P.; RT ; RL Submitted (01-JUN-1999) to the INSDC. RL Microbiology, University of the Witwatersrand, Jan Smuts Avenue, RL Johannesburg, Gauteng, South Africa XX DR MD5; 2f03d031b94586dd940b136bc7907c64. DR EuropePMC; PMC1079959; 15784145. DR EuropePMC; PMC4091138; 19264617. XX FH Key Location/Qualifiers FH FT source 1..2800 FT /organism="South African cassava mosaic virus" FT /chromosome="A" FT /mol_type="genomic DNA" FT /db_xref="taxon:63723" FT CDS 174..524 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:Q9IN46" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q9IN46" FT /protein_id="AAF34894.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQALEETYEPNTLGHDLVRDL FT IGVIRARDYVEASRRYNHFHSRLEGASKAELRQPVQQPCCCPHCPRHKQASIMDVPAHV FT PKAQNVQNVQKP" FT CDS 334..1110 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:Q9IN45" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q9IN45" FT /protein_id="AAF34893.1" FT /translation="MSKRPADIIISTPVSKVRRRLNFDSPFSSRAAVPIVQGTNKRRSW FT TFRPMYRKPRMYRMFKSPDVPRGCEGPCKVQSYEQRDDVKHTGSVRCVSDVTRGSGITH FT RVGKRFCIKSIYVLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRYRVMRKFHATVVGGPSGMKEQALVRRFFRINNHVVYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN" FT CDS complement(1107..1511) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /db_xref="GOA:Q9IN44" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q9IN44" FT /protein_id="AAF34897.1" FT /translation="MDSRTGELITAPQAKNGVFTWEITNPLYFDITNHDKRPGNMNHDI FT ITLQIRFNHNIRKALGIHKCFLNFKVWTTLRPPTGLFLRVFKYQVLKYLNMIGVISINT FT VLRAVDHVLYDVLLNTLQVTEQHAIKFNLY" FT CDS complement(1252..1659) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /db_xref="GOA:Q9IN43" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q9IN43" FT /protein_id="AAF34896.1" FT /translation="MQPSSPSTSHCSQVPIKVQHRTAKTRALRRRRVDLECGCSFYLHI FT DCINHGFSHRGTHHCASSKEWRFYLGNNKSPLFRHHQPRQAAREHEPRHHHPPDTVQPQ FT HQEGIGDSQVFSQLQGLDDLTASDWSFLKSI" FT CDS complement(1583..2647) FT /codon_start=1 FT /gene="AC1" FT /product="replicase" FT /db_xref="GOA:Q9IN42" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9IN42" FT /protein_id="AAF34895.1" FT /translation="MPRAGRFSIKAKNYFLTYPKCTLSKEAALDQLRQLQTPTNKLFIK FT ICRELHENGEPHLHALIQFEGKYNCTNQRFFDLISPSRSTHFHPNIQGAKSSSDVKSYL FT DKDGDTIQWGEFQIDGRSARGGQQSANDAYAKALNAASKTEALNVIRELAPKDFVLQFH FT NLNSNLDRIFQEPPIPYISPFLSSSFTHVPEELEDWVSENVMGFAARPWRPSSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNQSLKAWALKNATFITLHEPL FT FSSAHQSPTPHRED" FT CDS complement(2200..2496) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q9IN41" FT /protein_id="AAF34898.1" FT /translation="MKMGNLICMPSFSSRASTIVPTNDSSTSYPLPGQHISIQTFRELN FT PVLTSSPIWTRTETPSNGASFRSTDDLLAADNNPPMTLTPRLLTQQVKQRLLM" XX SQ Sequence 2800 BP; 703 A; 578 C; 724 G; 795 T; 0 other; accggatggc cgcgcccgac aaagtaggtg gaccccattg gatgaccgcg cccgtaaaag 60 aaagtggtcc ccacgcacgt gttgctgtcg gccagtcata ttcacgcgtg aaagcctaga 120 tatttgtttt atgtcgttat agacttcgtc gcgaagtagt ggagcgtgtc aacatgtggg 180 atccattgtt gaatgagttc cccgagtctg tgcacggttt tcgctgtatg cttgctatta 240 aatatttgca ggccttggag gaaacctacg agcccaatac tttgggccac gatctagtcc 300 gtgatctcat cggtgtgatc cgagcccgtg attatgtcga agcgtcccgc cgatataatc 360 atttccactc ccgtctcgaa ggtgcgtcga aggctgaact tcgacagccc gttcagcagc 420 cgtgctgctg tccccattgt ccaaggcaca aacaagcgtc gatcatggac gttccggccc 480 atgtaccgaa agcccagaat gtacagaatg ttcaaaagcc ctgatgttcc gcgtggctgt 540 gaaggcccat gtaaggttca atcttatgaa cagcgagatg acgttaagca tactggcagt 600 gttcgttgtg ttagtgatgt cacgcgtggt tcgggaatta cacatagagt aggtaaaagg 660 ttctgtatca agtctatata tgtgttaggt aagatatgga tggatgaaaa catcaagaag 720 cagaaccata caaaccaggt catgttcttc ttagtccgtg acagaaggcc ctatggcaat 780 agccccatgg actttggaca ggtttttaat atgtttgata atgagcccag tacagccact 840 gtgaagaacg atcttaggga taggtatcga gttatgcgga agtttcatgc caccgttgtt 900 gggggtcctt ctggaatgaa ggagcaggct ttggtgagga gattttttag gataaataat 960 catgttgtgt ataatcacca ggaggcagct aagtatgaga atcatacaga gaatgcgtta 1020 ttgttgtata tggcatgtac gcatgcctct aatccagtgt atgctacgct taaaatacgc 1080 atctattttt atgatgcagt aacaaattaa taaaggttga attttattgc atgttgctcc 1140 gtaacttgga gtgtgtttag taatacatcg tacagaacat gatcaacagc tctgagtaca 1200 gtgttaatgg aaataacgcc tatcatattt aaatacttga gcacttgata tttaaatact 1260 cttaagaaaa gaccagtcgg aggccgtaag gtcgtccaga ccttgaagtt gagaaaacac 1320 ttgtgaatcc ccaatgcctt cctgatgttg tggttgaacc gtatctggag ggtgatgatg 1380 tcgtggttca tgttccctgg ccgcttgtcg tggttggtga tgtcgaaata gaggggattt 1440 gttatttccc aggtaaaaac gccattcttt gcttgaggcg cagtgatgag ttcccctgtg 1500 cgagaatcca tggttgatgc agtcgatatg gagatagaac gagcagccgc attcgaggtc 1560 taccctccta cgtctgaggg ccctagtctt cgcggtgcgg tgttggactt tgatgggcac 1620 ttgagaacaa tggctcgtgg agggtgatga aggttgcatt ctttaaagcc caggctttaa 1680 gggactggtt cttttcctcg tccagaaact ctttatatga tgatgtcggt cctggattgc 1740 ataggaagat agtgggaatg ccgcctttaa tttgaatcgg cttcccgtac ttggtattgc 1800 tttgccagtc cctttgggcc cccatgaatt ctttgaagtg cttgaggtaa tgggggtcga 1860 cgtcatcaat gacgttgtac catgcgtcgt tgctgtaaac ctttggactg agatccaaat 1920 gtccacataa gtagttgtgt ggtcccagag atcgggccca catcgtcttc cctgtcctac 1980 tatcgccctc gatgacgata ctactcggtc tccatggccg cgcagcgaaa cccatcacgt 2040 tctcggaaac ccagtcttca agttcctcag gaacatgagt gaaagaagaa gaaagaaagg 2100 gagaaatata aggaatcgga ggctcctgaa aaatcctatc taaattgcta tttaaattat 2160 gaaactgtaa aacaaaatcc tttggggcta gttcccggat tacattaaga gcctctgttt 2220 tacttgctgc gttaagagcc ttggcgtaag cgtcattggc ggattgttgt ccgccgcgag 2280 cagatcgtcc gtcgatctga aactcgcccc attggatggt gtctccgtcc ttgtccaaat 2340 aggacttgac gtcagaactg gatttagctc cctgaatgtt tggatggaaa tgtgttgacc 2400 tggaagggga tatgaggtcg aagaatcgtt ggttggtaca attgtacttg ccctcgaact 2460 gaatgagggc atgcaaatga ggttccccat tttcatggag ttctctgcag atcttgatga 2520 acaatttatt tgttggggtt tggagttgtc ggagttgatc taatgccgct tctttcgaga 2580 gagtgcattt cggatacgtg aggaaataat ttttggcttt tatgctaaaa cgaccagccc 2640 tcggcatttt cgctgtcgta tagcaatcgg ggggcactca aagttcctag caatcggggg 2700 aatggggggc aatttatatg atgcccccca aatggcatat gtgtaatttt gtgatgaaat 2760 ttgaatttcg aacgtggaaa gcggccatcc gtctaatatt 2800 //