ID AF146280; SV 2; linear; genomic RNA; STD; VRL; 6985 BP. XX AC AF146280; XX DT 21-DEC-1999 (Rel. 62, Created) DT 06-DEC-2000 (Rel. 66, Last updated, Version 2) XX DE Soil-borne rye mosaic virus strain O RNA1 148K protein, 207K protein, and DE 37K protein genes, complete cds. XX KW . XX OS Soil-borne cereal mosaic virus OC Viruses; Riboviria; Virgaviridae; Furovirus. XX RN [1] RP 1-6985 RX DOI; 10.1007/s007050050627. RX PUBMED; 10603167. RA Koenig R., Pleij C.W., Huth W.; RT "Molecular characterization of a new furovirus mainly infecting rye"; RL Arch. Virol. 144(11):2125-2140(1999). XX RN [2] RP 1-6985 RA Koenig R.; RT ; RL Submitted (28-APR-1999) to the INSDC. RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany XX RN [3] RC Sequence update by submitter RP 1-6985 RA Koenig R.; RT ; RL Submitted (05-DEC-2000) to the INSDC. RL Institut fuer Pflanzenvirologie, Biologische Bundesanstalt fuer Land-und RL Forstwirtschaft, Messeweg 11, Braunschweig D38104, Germany XX DR MD5; 0e2a4b84fd41821d667200e81294b19a. DR RFAM; RF01081; SBWMV1_UPD-PKe. DR RFAM; RF01103; UPD-PKc. DR RFAM; RF01107; SBRMV1_UPD-PKf. DR RFAM; RF01109; SBRMV1_UPD-PKd. DR RFAM; RF01112; UPD-PKg. XX CC On Dec 5, 2000 this sequence version replaced gi:6580866. XX FH Key Location/Qualifiers FH FT source 1..6985 FT /organism="Soil-borne cereal mosaic virus" FT /chromosome="RNA1" FT /strain="O" FT /mol_type="genomic RNA" FT /db_xref="taxon:100887" FT CDS 85..5535 FT /codon_start=1 FT /transl_except=(pos:4009..4011,aa:OTHER) FT /product="207K protein" FT /note="putative replicase; ORF2; readthrough protein" FT /db_xref="GOA:Q9JAD2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9JAD2" FT /protein_id="AAF18333.2" FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK FT ETIPAEVGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTADRAYAMA FT IHSIYDIDLMDLANALEEKRIRIMSGTFLLSVDLLLGKKQGRLPTMDGFFEVEGDYVKY FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN FT GVVQDESFKCIPIEDNGNVVFPLFEVDKRSDTLRFSEILLPRDFVQRAVEYTGRLKGNQ FT LTAENVNTYLTSTNNTIIIGGSSKENVNKVDSLLIAQTTTTLVVWTELMHARQKRVMEL FT LRLQMKEDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG FT TSEKACDVVCTDNRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDGAESKYVWCAKL FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKSEKNDAEVTTDSTSGFVGAERKEFD FT AAMDFLTVVGSKNTDKLNAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE FT EEETTAPISDVTGLASVNEEIFENLQLGSSSNSTPSVVARENLSVGNDMGPSAMTSDDC FT STEGELREKSWASLAEEESDSSYYLKTAIISGKVQKSALPKAPDFSKFATFQAKAKQEA FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSKF FT GHSYGVGFSLNSKQEITKCELVKLMWNYDGKGQISQKPVNTKVFPYLLLSELTFMMNEL FT LIFCNLQKVIRKKERTKHTLITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK FT EKFSKRLKCTESALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK FT KVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRNRGPVNV FT NTVHETQGKTFDNVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF FT SDINDMRDVMEDKLMKNLSSELVKXRFGSKYESILICDREVRVPDVGNSVILQDFYDRV FT LPGNSTVDSHFDGYEVATTDITIEVENCKVHPHKNVRVWQDKRGLVPVLRTAMPPKRQN FT GMVEALLALKKRNMAAPKLQEAVNEFEVIDRTISRARSIFLNEDMIDESLVSTRESNMR FT WWERQSHTARQQLKSEYRVLHELDLCRYSYCIKGDEKPKNDLTPQREYGALQTVVYPDK FT IVNALFGPVMKEINERIRMALKPHVVYSSRMNAEELNRTVEFLDPEDEYDAFEIDFSKF FT DKSKTSLHIRAVIELYKLFGLDDMLALLWEKSQCQTTVIDKVNGITAYLLYQQKSGNCD FT TYGSNTWSAALALLESMPLEKAKFMIFGGDDSPILFPKQLCIEDPCRRLASLWNFDCKL FT FNFRHNMFCGKFLLKIGNKFKFAPDPMKLLTKLGRKDIADGKLLSEIFVSMGDNYGSYR FT DYRILEQLAVAVQERYRTNEDPTAMLITLKKYIFDFKLLASLFNYSGEFEVCKVGRNFE FT W" FT CDS 85..4011 FT /codon_start=1 FT /product="148K protein" FT /note="putative replicase; ORF1" FT /db_xref="GOA:Q9Q9Q6" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR013664" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q9Q9Q6" FT /protein_id="AAF18332.2" FT /translation="MPIDSSSILGIISEEDVVRAAISTSATKFGSQLHGTVCDHVKETY FT LDAVERQKIKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL FT LLSRIPKKSWVYDIGGNWATHVKRNDGRKVHCCCPTLDIRDAGRKTTRWASIEKYQDEK FT ETIPAEVGEKLKRIQEDENSIYANLKAGRCQPEDLNGKWYCGNKFEECVFTADRAYAMA FT IHSIYDIDLMDLANALEEKRIRIMSGTFLLSVDLLLGKKQGRLPTMDGFFEVEGDYVKY FT GFHNDTNPGYKHKLSQLMKYLTKTFVTAKGGSIYYLELTELRGDVMFFTMTDATEARMN FT GVVQDESFKCIPIEDNGNVVFPLFEVDKRSDTLRFSEILLPRDFVQRAVEYTGRLKGNQ FT LTAENVNTYLTSTNNTIIIGGSSKENVNKVDSLLIAQTTTTLVVWTELMHARQKRVMEL FT LRLQMKEDVDFKSLAHAAFLKVFGKVSFYQKALRSFANWISYCHGSDAIHFRPVPLYVE FT ITDRVKLWKTYAPNQGFVLDMEDLDEKIKLHEITEREKYDVSRHIVSTKLGELATGDYG FT TSEKACDVVCTDNRRKTDFGDLLEGEVATNFIDSWCEKDDHFNFSYDGAESKYVWCAKL FT LRMVWDTLIPPMEFAPVYVDDKDASIRIASRIEKSEKNDAEVTTDSTSGFVGAERKEFD FT AAMDFLTVVGSKNTDKLNAQRTEVVAVANAVVAQNKLYTESEVSNAVKLWADVDDEFLE FT EEETTAPISDVTGLASVNEEIFENLQLGSSSNSTPSVVARENLSVGNDMGPSAMTSDDC FT STEGELREKSWASLAEEESDSSYYLKTAIISGKVQKSALPKAPDFSKFATFQAKAKQEA FT LWYLQCKIVSDRTTLRSIIDDHLRGMFHNDTCELPKDSAFLDYTTDNGGAWMYGKPSKF FT GHSYGVGFSLNSKQEITKCELVKLMWNYDGKGQISQKPVNTKVFPYLLLSELTFMMNEL FT LIFCNLQKVIRKKERTKHTLITLRDGVPGCGKSTWIVENANPMKDMVLSMCKEATEDLK FT EKFSKRLKCTESALRRVRTVDSFLMHDYDKFRAATVHFDEALMAHAGMVYFCADILGAK FT KVLCQGDSQQIPFINRVESITLKYAKLQIDDTEYVRLTYRSPIDVAHYLTKKSYYSGGR FT VLTKNTTLRSMNTVGPRDAKPMTSVHCVPYQRDTQYLTFTQSEKADLYKALRNRGPVNV FT NTVHETQGKTFDNVIVVRLKTTENEIYPGGRKAQPYEIVATTRHRRSLVYYTAIEDRLF FT SDINDMRDVMEDKLMKNLSSELVK" FT CDS 5597..6577 FT /codon_start=1 FT /product="37K protein" FT /note="putative movement protein; ORF3" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q9Q9Q5" FT /protein_id="AAF18334.1" FT /translation="MGSKDVKGDSFESVYNKILDLQTEGDVGADSLKTNRQRSFNIENK FT YVEKALIQQDIATKMRDGWTTWTKTNKEEGTPYNMSYSCVLLNVIPTVPRGYSGTVEIS FT LIDSGLSPLENVIPDQTQMMELGNGPHVMCLFMHYGIPLNDEGRVIKLSFKIGAEMASK FT KMSVMNAYSYWTQKQGHLSVYTEPQRSTCSKLLLGYDKSLKLKTRGDVRRFVSRSLATN FT NLEQSVPKMLPNSINILKENVPLFKKESVLDLTEQEREKQKRLDTLRNVNEAQRRKSAQ FT ETQKRNDDLIKANVQKQKAKQFEIDENRKNHYDASGMKFGSVGSD" XX SQ Sequence 6985 BP; 2010 A; 1162 C; 1852 G; 1961 T; 0 other; ttagacaaca caagtgttta cgaaatacag ttcttgtcaa acaaaggcac gcttcggcga 60 taaatccttt gtttacaaga cacaatgccg attgatagca gttcaatatt gggtattatc 120 agtgaggaag atgttgtacg ggctgcaatt agcactagtg ctacgaaatt cggttcgcaa 180 ttgcatggta cagtgtgtga tcatgtgaag gagacatatc ttgatgcggt tgaaagacag 240 aaaataaaaa agaagattga cgttcgtagg gacctgtcac aagagcagct gcagttgttg 300 aacgatttat atcccgaacg acacatcgtt tccagcaatt gcgaacgcgg tactcatagc 360 tttgcagcgg cctctcggaa gatcgaaaca gacttgttgt taagtcgaat accaaaaaaa 420 tcgtgggttt acgatattgg tggtaattgg gcgacacatg tgaagcggaa tgatggtagg 480 aaagttcact gttgctgtcc gaccttggac attcgtgacg ccggtcggaa gacgactcgc 540 tgggcttcta ttgagaagta ccaagacgag aaggaaacta ttcctgctga agtcggtgag 600 aagctcaaga ggatacagga ggacgagaat agcatctatg ctaatcttaa agctggtaga 660 tgtcaaccag aggatctgaa tgggaagtgg tattgtggta ataagtttga agagtgcgtg 720 tttacggctg atagagccta tgccatggct atacacagta tttatgacat tgatctaatg 780 gacttggcca acgctttaga agaaaaacgt ataagaataa tgagtggcac gttcctgctt 840 tctgtggatc tactgctggg gaaaaagcag gggagacttc caacgatgga tggtttcttc 900 gaggtggaag gtgattatgt gaaatatggt tttcataatg acaccaatcc tggttacaag 960 cacaaactga gtcagttgat gaagtatctt acgaaaacct ttgttactgc taaagggggt 1020 tcgatatatt atcttgaact gacagagttg cgaggtgacg tgatgttttt tactatgacg 1080 gacgcgacgg aggctaggat gaacggtgtg gttcaggacg agtctttcaa gtgcatacct 1140 atagaggaca acgggaatgt ggtgtttcct ttgtttgaag tggacaagcg tagcgatacg 1200 cttcgcttct cggagatttt gctgccccgt gattttgtgc aaagggcggt tgagtatacc 1260 ggccgtttga aagggaatca actcactgct gaaaacgtaa acacatatct gacatcgacc 1320 aataatacca ttattattgg cggttcgtca aaggaaaatg tgaacaaggt tgattcactg 1380 ctgatagcac agacaaccac gacattggtg gtctggactg aactgatgca cgcaaggcag 1440 aagcgagtta tggagttgct gaggttgcag atgaaggagg atgtggattt taagtctttg 1500 gcacatgctg cttttctgaa agtgttcggt aaggtaagtt tctaccaaaa ggcgttgagg 1560 agttttgcga attggatttc atactgtcat ggctctgatg ctatacattt tcgccctgtg 1620 ccactgtatg ttgaaataac cgacagagtg aagttgtgga aaacttatgc accgaatcag 1680 ggtttcgttt tggacatgga agatttggac gagaagataa aactgcatga gataaccgag 1740 agggaaaaat acgatgttag tagacacatt gtatctacta aacttggcga attggctact 1800 ggagattacg gtacatccga aaaagcttgt gatgtggtgt gcactgataa ccggagaaaa 1860 actgattttg gtgatctgtt ggagggagag gtggccacga acttcattga ctcttggtgc 1920 gagaaagatg atcattttaa cttttcttat gatggtgctg aatcaaagta cgtgtggtgt 1980 gcaaagttgc tgagaatggt gtgggatact ttgatccctc ccatggaatt tgcacccgtt 2040 tatgtggacg acaaggacgc gtcgattcgc attgcatcaa gaattgagaa gagtgagaaa 2100 aatgacgctg aggttactac tgatagtacc tctgggtttg tcggtgctga gaggaaagag 2160 tttgacgctg ctatggattt tctgacggtt gttgggagca aaaacacgga taaactgaac 2220 gctcagagaa cagaggtcgt tgctgtggct aacgcggtag tcgcgcagaa taagctgtac 2280 acggaatctg aggtgtctaa tgcagtgaag ctttgggctg atgttgatga cgaatttcta 2340 gaagaagaag agacaactgc tcccatatcg gacgttactg gtctcgcttc tgtaaatgaa 2400 gagatttttg agaatttgca attgggcagc tcgtctaatt ctacgccatc cgtcgtggca 2460 agagagaatc tgtctgtggg gaacgacatg ggtccctcgg ctatgaccag cgatgattgt 2520 tcgactgagg gtgaacttag ggaaaaatct tgggcatctt tggcagagga agagagcgat 2580 tcgtcttact atctaaaaac tgcgattatt tcgggtaaag tgcagaaaag tgcactacca 2640 aaagctccag acttttcgaa gtttgcgacg tttcaagcga aggcgaaaca ggaggctttg 2700 tggtacttac aatgcaagat cgtttctgat cgtacgacat tgcggagcat catagacgat 2760 catttgagag gtatgtttca caatgatact tgtgagttgc ctaaggattc agcttttttg 2820 gactacacga ctgataacgg tggtgcttgg atgtacggga aaccatctaa atttgggcac 2880 agttacggtg tgggtttttc attgaattcg aagcaggaga ttaccaagtg tgagttggtg 2940 aaactgatgt ggaactatga tggcaagggg cagataagtc aaaaacctgt gaacacaaaa 3000 gtttttccgt atctgttgct gagtgaattg acattcatga tgaacgaatt gctcattttc 3060 tgcaatttgc agaaagttat taggaagaag gaacggacga aacacaccct tattacttta 3120 cgggatggtg tcccgggttg cggcaaatct acttggattg ttgagaacgc aaaccccatg 3180 aaagatatgg tattgtctat gtgcaaggag gcgactgaag atttgaaaga aaaattttcg 3240 aagaggttga aatgcacgga atcggcgttg aggagggtgc gaactgtgga ttcttttctg 3300 atgcatgatt atgataaatt cagggcagca acagttcact ttgacgaagc tctgatggcg 3360 catgcaggaa tggtttactt ttgtgcggat attttgggtg caaaaaaggt gctgtgccaa 3420 ggagactcac aacagattcc ttttataaat cgtgttgaat ctatcacgct gaaatacgca 3480 aaattgcaga ttgatgatac ggagtatgtg agattgactt atcggtcacc tattgatgtt 3540 gcacactatc tcacgaagaa gtcttattat agtggaggta gggtgcttac gaagaacaca 3600 actttgaggt ctatgaacac tgttggccct cgcgatgcga agcctatgac atctgtacat 3660 tgtgttccct accagcgtga tactcaatat ctgacgttca ctcaatcgga gaaagctgac 3720 ctttataagg cactacgaaa cagggggccg gtaaatgtga ataccgtgca cgagacacag 3780 ggtaagacgt ttgacaatgt aatcgtggtg aggctgaaga cgacggaaaa tgagatttat 3840 cccggaggaa ggaaggctca accatatgag attgtggcta ctacgaggca cagacgttca 3900 ttggtgtact atactgcgat cgaagatagg ctgttttctg atatcaatga tatgagggat 3960 gtgatggaag acaaattgat gaagaacctt agctctgagt tggtgaaatg acggtttggg 4020 tcgaagtatg aatccatatt gatttgtgat agggaagtga gggtacccga tgtgggaaat 4080 tctgttattt tgcaggattt ttacgacagg gttctacctg gaaattctac agtggattca 4140 cacttcgacg ggtatgaagt ggcgacgaca gacattacta tagaggttga aaattgtaag 4200 gttcaccctc ataagaatgt gagagtttgg caagataaac ggggtctggt tcccgttttg 4260 cgtactgcaa tgccaccgaa aaggcagaat ggcatggtgg aagcactttt agcattgaag 4320 aaaagaaaca tggctgcacc gaaactacaa gaagctgtga atgaattcga ggtgatagat 4380 cggactatta gtcgcgctag atcaattttc ttgaatgaag acatgattga cgaatcgttg 4440 gtatcgacgc gtgagtcaaa tatgcgatgg tgggaaagac agtcacatac agctaggcag 4500 caattgaaaa gcgagtatag ggtactgcat gagttggact tgtgcagata ttcttactgt 4560 attaaaggcg atgaaaaacc aaagaatgat ctgacgcctc aacgcgaata tggtgctttg 4620 cagacagttg tttatcctga taagatcgtt aatgcgctgt tcggacctgt tatgaaggag 4680 ataaatgagc gtataaggat ggctttgaaa cctcatgtgg tttacagttc gaggatgaat 4740 gccgaggagt tgaatcggac tgtcgaattt ctggatccgg aagatgagta tgacgcattc 4800 gaaatagatt tttcaaaatt tgacaaatcg aaaacgtcat tgcacatacg agctgtaatt 4860 gagttgtata agctgtttgg tttggatgat atgttggcct tactttggga gaaatctcaa 4920 tgtcagacca ctgttattga caaagtaaac ggcattactg cttatttgtt gtaccagcag 4980 aaatctggca attgcgacac ttatggttct aacacgtggt cggccgcttt ggcgttgttg 5040 gagtctatgc cattggagaa agctaaattt atgatttttg gtggggatga ctctccgatt 5100 ttgtttccta aacaactctg cattgaggat ccgtgtagac gtttggcgtc tctgtggaac 5160 ttcgattgta agttgtttaa cttcaggcat aatatgtttt gtggtaagtt tttgttgaag 5220 atcgggaaca agtttaaatt cgctccagat ccgatgaagt tgttgacgaa gttgggacgc 5280 aaggatattg cagatggtaa attgctctct gagatttttg tttctatggg agacaattat 5340 ggctcttacc gggactatcg tattttggag caacttgcgg tggctgtgca agaaaggtac 5400 aggacgaatg aggaccctac cgcgatgttg atcactttga agaagtatat ttttgatttt 5460 aagttgttgg ctagtttgtt taattatagt ggtgagtttg aagtgtgtaa agtggggagg 5520 aactttgagt ggtgactcgc tgttctcgtt gtttttcttt tgtgtattct attgtgttaa 5580 acgttgtgct acagccatgg gttcaaagga tgtgaagggt gactctttcg aaagtgtgta 5640 taacaagatt ttggacttac aaactgaggg agatgttggt gcagacagtc ttaagaccaa 5700 tcgtcagagg agttttaata tcgagaacaa atatgttgaa aaggctctga ttcaacagga 5760 tattgcaaca aagatgagag acggatggac cacttggact aagactaata aggaggaagg 5820 aacgccttat aatatgtctt atagctgcgt actgctgaac gtcattccaa ctgtaccgcg 5880 aggttattct ggcacagttg agatttcgtt aattgattcg ggcctgtcac cgcttgaaaa 5940 tgttattccg gatcagactc agatgatgga acttgggaac ggaccgcatg tgatgtgtct 6000 tttcatgcac tatggtatac cgctcaacga tgaaggcaga gtgattaagt tgtcgtttaa 6060 aattggagca gaaatggctt caaagaagat gagtgttatg aatgcttact cctattggac 6120 gcaaaaacaa ggccatttat ctgtttacac tgaaccacag cgatcgacat gttcgaaact 6180 tttacttggt tacgacaaat cactgaaatt gaagactagg ggtgacgtgc ggcgttttgt 6240 ttcacggtca ctagcaacca ataatcttga gcaaagcgtt cctaagatgc ttcccaacag 6300 cattaatatt cttaaagaga acgtacctct tttcaaaaaa gagagcgtgc tggatttgac 6360 ggaacaggag agggagaagc agaaaaggct tgataccttg agaaatgtta atgaggcaca 6420 gagacgtaag agtgcacagg agacgcagaa gagaaatgat gatttgatta aggcgaatgt 6480 gcaaaagcaa aaggccaaac aatttgaaat tgatgaaaac cggaaaaatc actatgatgc 6540 ttctggtatg aagtttggtt cagttggaag tgactgagtc tggttttatt ttatatattt 6600 atatatgtat tgtggttttg ttgtgtggtt tattttcgct tatattgcta tattgcatgt 6660 gtgcgttgaa aatagcctaa cttgtcgggc agagacaagt cgttgccgtc acgatagacg 6720 gagccgctgg gattgcggat tataaatcga acaagcctat ttgtacgggt cgagtacaaa 6780 cgtggccatc acgatagatg gttctgtttt tcgaacagat gtaaatcgaa gacgtcgtgc 6840 agtacggtaa actgcacatc tatcctctag tttctattga tgtaattgaa aaaagatcaa 6900 tattttacga tgatgaggag cgactggtgg tcgcggtagc tatgacacag ctactaagag 6960 gggttcaaat ccccccccga accgg 6985 //