ID AF135409; SV 1; linear; genomic RNA; STD; VRL; 2958 BP. XX AC AF135409; XX DT 24-AUG-1999 (Rel. 60, Created) DT 24-AUG-1999 (Rel. 60, Last updated, Version 1) XX DE Tomato ringspot virus isolate Raspberry RNA1 polyprotein gene, partial cds. XX KW . XX OS Tomato ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-2958 RA Wang A., Sanfacon H.; RT "Diversity in the coding regions for the coat protein, VPg, protease and RT putative putative RNA-dependent RNA polymerase among tomato ringspot RT nepovirus isolates"; RL Unpublished. XX RN [2] RP 1-2958 RA Wang A., Sanfacon H.; RT ; RL Submitted (17-MAR-1999) to the INSDC. RL Pacific Agri-Food Research Centre, 4200 Highway 96, Summerland, British RL Columbia V0H 1Z0, Canada XX DR MD5; 2b454ab7291d4f733cabfb92fc3e4c42. DR EuropePMC; PMC2861173; 20229114. XX FH Key Location/Qualifiers FH FT source 1..2958 FT /organism="Tomato ringspot virus" FT /chromosome="RNA1" FT /isolate="Raspberry; Rasp-1" FT /mol_type="genomic RNA" FT /country="USA:Washington" FT /db_xref="taxon:12280" FT CDS <1..2958 FT /codon_start=1 FT /product="polyprotein" FT /note="cleaved into VPg, protease, putative RNA-dependent FT RNA-polymerase" FT /db_xref="GOA:Q9QRA7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q9QRA7" FT /protein_id="AAD50651.1" FT /translation="STIPSGSYADVYNARNMTRVFRPQSVQGSSLAEAQFNESHAVNML FT VRIDLPDGNIISACRFRGKSLALTKHQALTIPPGAKIHIVYTDNNGNTKAPLTHFFQPT FT GPNGEHFLRFFNGTEVCIYSHPQLSALPGAPQNYFLKDVEKISGDIAIKGCGIKLGRTS FT VGECVGVKDNEPVLNHWRAVAKVRTTKITIDNYSEGGDYSNDLPTSIISEYVNSPEDCG FT ALLVAHLEGGYKIIGMHVAGSSYPVEVDGVQMPRYISHASFFPDYSSFAPCQSSVIKSL FT IQEAGVEERGVSKVGHIKDPAETPHVGGKTKLELVDEAFLVPSPVEVKIPSILSKDDPR FT IPEAYKGYDPLGDAMEKFYEPMLDLDEDVLESVMADMYDEFYDCQTTLRIMSDDEVING FT SDFGFKIEAVVKGTSEGYPFVLSRRPGEKGKARFLEELEPQPGDTKPKYKLVVGTEVHS FT AMVAMEQQARTEVPLLIGMDVPKDERLKPSKVLEKPKTRTFVVLPMHYNLLLRKYVGIL FT CSSMQVNRHRLACAVGTNPYSRDWTDIYQRLAEKNSVALNCDYSRFDGLLNYQAYVHIV FT NFINKLYNDEHSIVRGNLLMAMYGRWSVCGQRVFEVRAGMPSGCALTVIINSLFNEMLI FT RYVYRITVPRPLVNNFKQEVCLIVYGDDNLISIKPDTMKYFNGEQIKTILAKYKVTITD FT GSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDLQAIYSSLYYINPQGNILKSLF FT LNAQVALRELYLHGDVEQFTAVRNFYVNQIGGNFLSLPQWRHCASFHDEQYSQWKPWSP FT VKFLEVDVPDAKFLQHKAPATALSIVADRLAVAGPGWRNKDPDRYLLVSLTSLKANEGG FT LYFPVDYGEGTGQQATEASIRAYRRLKDHRVRHMRDSWNEGKTIVFRCEGPFVSGWAAA FT ISFGTSVGMNAQDLLINYGIQGGAHKEYLGRYFVGARFKELERYDRPFQSRIIAS" XX SQ Sequence 2958 BP; 757 A; 606 C; 723 G; 872 T; 0 other; tcgacgattc cctccggtag ttatgcagac gtgtacaatg cgcgcaacat gacacgtgtt 60 ttccgcccac aatctgtaca gggttcttct ttggcggaag cgcaatttaa tgaatcgcac 120 gctgtgaata tgttagtgcg aattgattta cctgatggca acattatttc tgcctgcagg 180 tttcgcggaa agtctttggc tttgactaaa catcaggcct taaccatacc gccaggtgct 240 aaaatccata ttgtatatac tgacaacaat ggaaatacca aagcaccgct gactcatttt 300 ttccaaccta ctggacccaa tggagaacat tttttgagat tcttcaacgg gacagaggtt 360 tgtatttatt cccaccctca actttcagct ttgcctggcg ctccacaaaa ttatttcttg 420 aaagatgtgg aaaaaatatc tggtgacata gccattaaag gttgtggcat caagctaggt 480 agaaccagcg ttggcgagtg tgttggtgtt aaggacaatg aacccgtctt aaatcactgg 540 cgcgctgtcg cgaaggtccg caccaccaag atcactatcg ataattattc agagggtggt 600 gattattcca atgatcttcc tacgtccatc atctctgagt acgtaaattc accagaagat 660 tgtggcgcgc ttttagtcgc ccatcttgaa ggtggttaca aaatcatagg gatgcacgtg 720 gcgggatcct cttatcctgt cgaggttgat ggagtgcaga tgccaagata catatctcat 780 gcctccttct tccccgatta ttcttctttt gctccttgcc agtctagtgt tatcaaatct 840 ctaattcaag aggctggcgt tgaggagcgt ggggtttcta aagtgggaca tattaaagat 900 cctgctgaga cgccccatgt tggagggaaa actaagcttg aattggttga tgaagccttc 960 ttggtgccat caccagttga ggtaaagatt ccctccattc tgtctaaaga tgacccgcgc 1020 attcctgaag cgtataaggg ttatgatcca ttgggcgatg ccatggagaa gttttatgag 1080 cccatgttgg atctggacga agatgtcttg gagagcgtta tggcagatat gtatgatgaa 1140 ttctatgatt gccaaacgac tctccgtatt atgtctgatg acgaagttat caatggcagc 1200 gattttggtt tcaaaattga agccgttgtc aaaggtactt ctgaaggcta cccgttcgtt 1260 ttgagtcggc gaccgggcga gaagggcaaa gctcgctttt tagaagagct tgaaccccaa 1320 ccaggtgaca ctaagcctaa atataaactg gttgtgggca ctgaggtgca ttctgctatg 1380 gtggcgatgg aacaacaggc gcgtactgaa gttcctttgc ttattggtat ggatgttccg 1440 aaggatgaga gactcaaacc gtctaaggtg ttggagaagc cgaagacgcg tacattcgtt 1500 gttctcccaa tgcactataa cttgctgctg cgtaagtatg tgggaatttt gtgttctagc 1560 atgcaagtta ataggcatcg tctagcatgt gctgtgggca ctaacccata ttcgcgtgat 1620 tggacggaca tttatcagcg cctggctgag aaaaattcag tggccttgaa ttgtgattat 1680 agccgctttg atgggctcct caattaccag gcatatgtgc atattgttaa ttttattaat 1740 aaattgtaca acgatgaaca ttctatcgtg cgtggcaatc ttttgatggc tatgtatggt 1800 aggtggagtg tgtgtgggca gagagttttc gaagtccgcg ctggcatgcc ctctgggtgt 1860 gcgctcaccg tgatcatcaa ttcacttttt aacgaaatgt tgatcaggta tgtttatcgc 1920 atcaccgtac cacgccccct tgtaaataat tttaaacagg aggtgtgttt gattgtttat 1980 ggtgatgata atttaatttc tattaagccg gacaccatga aatattttaa tggtgagcaa 2040 atcaaaacca ttctggctaa atataaagtt accattactg atggcagtga taagaactca 2100 cctgttctta gagccaaacc cttgaaacag ctcgattttt tgaagagagg tttcagggtt 2160 gaaagtgatg ggagggtgct tgccccttta gatttgcaag ctatctattc ttccctgtat 2220 tatatcaatc cgcagggaaa tatattaaaa tctttgtttt tgaatgctca agtcgctttg 2280 agagagttat atctccatgg cgatgttgag caatttactg ctgtcaggaa tttttacgtc 2340 aatcaaattg gcggaaattt cttgagtcta ccccagtgga ggcactgcgc ttcgttccat 2400 gatgaacaat attctcagtg gaagccgtgg tctcccgtta aattcttgga ggtagatgtg 2460 cccgatgcta aatttttaca gcataaggcg ccagctactg ccctctcgat tgttgctgat 2520 aggcttgctg ttgcaggacc tggctggcgt aataaagatc cagacaggta tctgttagtg 2580 agccttacca gcttgaaagc aaatgagggt ggattatact tccccgtaga ctacggggag 2640 ggtacagggc agcaagccac ggaagcttcc attagagctt atcgtaggct aaaggatcat 2700 cgcgtacgcc atatgcgcga ttcctggaat gagggaaaga caatcgtgtt ccgatgcgaa 2760 ggtccctttg tttcaggatg ggcagctgcc atttccttcg gtactagcgt tggaatgaat 2820 gcccaagatc tcttaatcaa ttatggtata caaggtggcg cccacaagga atatctggga 2880 cgctactttg ttggtgctcg ttttaaagag ctggagaggt atgaccgacc ttttcagtct 2940 cgtataattg cgagctaa 2958 //