ID AF133128; SV 1; linear; genomic RNA; STD; VRL; 8917 BP. XX AC AF133128; XX DT 02-JAN-2001 (Rel. 66, Created) DT 30-MAR-2012 (Rel. 112, Last updated, Version 2) XX DE Watermelon spotted wilt virus L protein (L) gene, complete cds. XX KW . XX OS Orthotospovirus citrullomaculosi OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-8917 RX PUBMED; 18943848. RA Chu F.H., Chao C.H., Chung M.H., Chen C.C., Yeh S.D.; RT "Completion of the Genome Sequence of Watermelon silver mottle virus and RT Utilization of Degenerate Primers for Detecting Tospoviruses in Five RT Serogroups"; RL Phytopathology 91(4):361-368(2001). XX RN [2] RP 1-8917 RA Chu F.H., Yeh S.D.; RT ; RL Submitted (05-MAR-1999) to the INSDC. RL Plant Pathology, National Chung Hsing University, 250 Kuo-Kuang Road, RL Taichung 402, Taiwan, R.O.C. XX DR MD5; 526aef2a3c74efea898f082b8b20712b. DR EuropePMC; PMC2725914; 17554814. DR EuropePMC; PMC3388970; 21182398. DR EuropePMC; PMC4818514; 27038777. DR EuropePMC; PMC5552725; 28848524. XX FH Key Location/Qualifiers FH FT source 1..8917 FT /organism="Orthotospovirus citrullomaculosi" FT /mol_type="genomic RNA" FT /db_xref="taxon:3052571" FT gene 33..8669 FT /gene="L" FT CDS 33..8669 FT /codon_start=1 FT /gene="L" FT /product="L protein" FT /note="RNA polymerase" FT /db_xref="GOA:Q9DSQ1" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="InterPro:IPR015841" FT /db_xref="UniProtKB/TrEMBL:Q9DSQ1" FT /protein_id="AAG43276.1" FT /translation="MNIQTINSFLDTSGEITVYLQAIKDEIMLMSNIVERSYPEGKGVI FT DSGLNSIMSMNYILDKIEDMKSKYHQSSSSIDQKEMETEIYLFLDKYKELELMRHDLFG FT VLAGRRLHFAPKHRSDVFLKDCLMSYIEFCNTSTSIINQINNVDDLKEKLVFQHLTPDN FT YTIYKETKGEKACLMIYDWKVSVDTMSEAKTSENYYTSVWKTFKDITIDGQPFLERHPI FT FITIVILNPSGNMSITATTSRVIQEFRNSPYKTFADRNRAAIASKLISVNSLGQLIGLG FT ADHFRRFYSETQAFKNSLLAKVGEYMNRSSEVFFSHWSYEYRKTNLSNNQISQDIIDLI FT DAMPNGTIKKDMLVHFLFGSYLYFKETMSDFHLKDRFEGYKAHCEMMKIAPIETEERLK FT EYLDKNEQLFESLYEGHLEKIKSDVLFGKAKEIEIDSIESAFNINAEEYQKEYPGCFTN FT NLQETKTNFSICWSPMTQELEMNKFNYNNAIIQSFRDAFSDQVKLIHHKSYGGNKMDIH FT FSMTLFNLVKTCLVDLSIDTTGHSEAALEDVVDIKDGSIQVKRTENSQKWREIGDVKTR FT NGNEFTLSSLTSHEARKHFFKGLSLMYVDMGKKKKIDIKNDLKSKIQESIAKKKDEELD FT GNSGEYDVSKADIPFQMSLKEITHNKKLIRHDNPDVKYHCESMIEAMYVLYGMDERKGR FT TSKINSVYDEYCSDPSLLFTKGNLIETEMVISKNIHEVSKELSVYTYSEDMMQMAKGLM FT VADRFMKKTDFKILTCANTSMICLAFKGDGINTGKSGVPYITLHKVEKDIQPYFISLYT FT KELIVSFKCANYFINIMRPQRLNQVRLLSLFKAPSKVPILFSQYSLLSTEIKKWLNQPS FT VDVFTCPENKIQYLQKILFSSVIIGTVTKLSRMGIFDFMRYAGFLPLSDYSNIKEYIAE FT KFDPDITNVIDCFFVSGIKTLLLKMEGINLSNSIKPLTIDQENDMSGGISDLDIICPIT FT GSTLKTIECLYNNVYLAIYMMPKSLHTHVHNLTALLSVPAEWEIKFREKMGFLIDDEIK FT PKKEMFNDSGPFSINGVLNVKTLFDYYKKNITNVGACRSNIEDKEDFLSAPYKIKTLTS FT SKKCSKADIIKSSEIVSALKSTLGKQPDDIKGSDLYILKGVLKCFEEDRESLMKFMEVE FT GLDEPKYLHFFSNMMSGDNKILMKTNQDKFYYKSHPLTVETFMKVRYGYFKTTTVLKSK FT KVSEELYDLIKEFNKITEIDLEALERLGRGLKGNRVTFIQLLEFILMKSRTNAGNTDFL FT VSVFEKMQRTKMDREIYLMSMKTKMMLYFIEHTYKHIAQSDPSEAISISGDYKIKNLAS FT LSYDTITNYNTALQKNLECKMAFLSADQSKWSASDLTYKYILAVIMNPILTTGEINLMC FT ECIMMYIKLKRVCIPTDIFLNLKRGQTEYGSYGTALSVLTDNLETNTFPVSMNWLQGNL FT NYLSSVYHSCAMIGYEKAMKKMKDYDFTIRWMVHSDDNATSIVVRGDLKKLLSSFNCSS FT LSELLFRSIQSHFKSYCITLNPKKSYASESEVEFISERIINGAVIPLYCRHLANCSTES FT SHNSYFDDLMSLSIHITMLLRKGCPNELIPFAYAAIQVQSLSIYSMLPGEENDIDSIVK FT AIDFPLTKREIPICAGGWMHAPVELLSILGPSSNDQLIYYKIILDFFNLKDFNGLKKNV FT NSLGYIDLRINELFKRIKYKKITCADKKMICMVNLFKTSLMSEDCDSLNVGMKFQSMIT FT QIIKLPSFVSEGSLSKNSSFQDFCKLFPNLKKNTDILNALKPVDLDERNLDEWSESKFL FT SQIQLEELSRHMASHPESFLIAPMNDKDYILTNLYMYSSVSKRNQMSNQSTEKLALDRI FT LRSKAKTFLDPDSKEMVSYKDNMFMKMREIMDPAGNDFKIISTISGLMVRDMNFEMVVS FT LMENTVANASIPKANYNFRWFITEKVPSIIEGSPGLIVMSAVYGMDYLIELGLKKLPLT FT ETSISILHDIFGNRKTFDDVKECIQEANGQYKTEEFQDANELKRYVLSINYMIQSQNKL FT LSINTCFSRKNFPFYSKYNLGKTFITNTLAIWSTIYSRLTNINFYTNLNFVIDRSSRLI FT ISLQRDMNLEKLIDCCAYISDRLQSLFPDMTIESVKQILSRLNFNGVDLMRKMKSEITE FT VKRAINNIKTSTHVTLSFRPQMIAMSKHAAWLYNFGYINEKEFKFVIDQIRQSEVHYIK FT TDEQDVRGYYVSGHTYKIGIKTQYNYGQLAMSNQDISIHLHSPYEYQREDDGKIWEVHV FT KSAYKLLQKLLIDKQSAIKTFLNIRTELMPNQFCIHESSNKTLLILINDTTKPITLERI FT KFKGDIKYIPSSDFAWNMMSNQSKYKLRTAETGECYTELYKMIDYSDSLENTILTNLKK FT SLEYGNEMENLIEQSTRDIDDEETVEYIRDSVDQIHKLAVEGLETCKTSEEFENYLKRV FT DFQSTVDFHKDLLEQIVEERYGASARLDNAVDKLTRWTNSLSTFKDVCTMLKFSMVNDS FT KGIKTYKANGADFYSLSASEVMTSQGFDLFELLKLIKACEACHTSNSVLNLIAFKNIKN FT KTFIPGFKKNLPNTVHFDYEMKLNNEVMNKFYEYKTISLQDIKISDRVRTVLETHGFSV FT TGQNLKLEEMDLELNPVEIIDDSSTYDQIARQMRLTKKKSSYLIPANTLLLGELMKFLM FT LCIKGEEHDIMKLLRSHFAMKPVRENRLLCVQDAVMTCRISGFIQRHFLNDKKEIILLG FT VSDSLENFISLATPNYAVQEPFKAEALKKKPPLEVYDSGKYKILKNIRSYIVADVEFLT FT EKCLYSNIANEEISSMIFNAVSKIDLELSNLKPEKRKKRLDLHEVFNKFLGSGSTSSDQ FT E" XX SQ Sequence 8917 BP; 3284 A; 1374 C; 1670 G; 2589 T; 0 other; agagcaatcg tgcaacaata agaatatcag taatgaacat ccagactata aacagtttcc 60 tagatacttc aggcgaaatt accgtgtacc ttcaagcaat aaaagatgaa attatgttga 120 tgtcaaacat tgtggaaaga agctatcctg aaggtaaagg agtaattgac tctgggctga 180 attcaataat gtcaatgaac tatattttag acaagattga agacatgaaa tctaaatatc 240 atcaaagttc ttcttctatt gaccaaaaag agatggagac agagatctat ctgtttcttg 300 ataaatataa agaactagaa ctgatgagac atgatctttt tggtgtctta gcaggaagga 360 ggttgcattt tgctccgaaa cacaggtctg atgttttcct taaagactgt ctcatgtctt 420 atatagagtt ctgcaacaca tctacatcta tcataaatca gataaacaac gttgatgatc 480 tgaaagagaa acttgttttc cagcatttaa ctccagacaa ttatactata tacaaagaaa 540 ctaaaggtga gaaagcctgt ctgatgatat atgattggaa agtctctgta gacactatgt 600 ctgaagctaa aacatctgag aattactaca caagcgtgtg gaaaacattt aaagatatta 660 ctatagatgg gcaacccttc ttagagagac atcctatatt cataaccatt gttatattaa 720 acccaagtgg aaacatgtcg attacagcca caacaagcag agttatccag gaatttagga 780 actcacctta taagaccttt gcagatcgaa atagagctgc tattgcatcg aagcttatat 840 ctgtcaactc actaggtcag ctcataggtc tgggagctga tcattttcga cgattttatt 900 ctgagacaca agcatttaaa aattctcttc tggccaaagt cggtgaatat atgaataggt 960 catcagaggt tttctttagc cattggtcat atgaatatag aaagactaat ctgtcaaata 1020 atcagatcag ccaagatatt attgatctaa ttgatgctat gcctaatggt acaataaaga 1080 aagatatgct agtgcatttt ttgttcggta gttacctgta cttcaaagag accatgagcg 1140 attttcacct taaggataga tttgaaggat ataaagcaca ctgcgagatg atgaagattg 1200 cccctattga gacagaagaa agactcaaag agtacttaga caagaacgaa cagctatttg 1260 aaagcctata tgagggtcat ttggaaaaga taaaatctga tgttctattt gggaaagcta 1320 aagagataga gatagacagt attgaaagtg cttttaatat caatgcagaa gaatatcaaa 1380 aagaataccc tggttgtttt acaaacaacc tccaggaaac taaaacaaat ttttcaatct 1440 gttggtcacc aatgactcaa gagctggaaa tgaataagtt caactacaat aatgcaataa 1500 tacagtcctt tagggatgct tttagcgacc aggtgaagct tatccatcac aaatcatatg 1560 gaggcaacaa aatggacatt catttttcta tgaccctctt taatctagtg aaaacctgtc 1620 tggtagatct aagcatagat acaacaggtc actcagaagc agctttagaa gatgttgttg 1680 atatcaagga cggcagtatt caagtaaaaa ggactgaaaa ctctcaaaaa tggagggaaa 1740 taggagacgt gaagacaaga aatggtaatg aattcacatt gtcatcattg accagtcatg 1800 aagcaagaaa gcattttttt aaaggtttaa gcttgatgta tgtcgatatg gggaaaaaga 1860 agaaaattga cataaaaaat gatctgaaaa gcaagattca agaatctata gcaaagaaaa 1920 aagatgaaga attggatggt aatagtggag agtatgatgt gtcaaaagcc gacatacctt 1980 tccaaatgag cctcaaagag atcacacata acaaaaaact tatcagacat gacaatcctg 2040 atgtgaagta tcactgcgaa tcaatgattg aagctatgta tgttctttac ggcatggatg 2100 aaagaaaagg caggactagc aaaataaact ctgtttatga tgaatattgc tctgatcctt 2160 cactgctctt tactaaagga aacctgatag agacagaaat ggtgatttct aaaaatatcc 2220 atgaagtttc taaagaactg tctgtgtaca catacagtga ggacatgatg cagatggcta 2280 aagggctaat ggtggctgac agatttatga agaaaacaga ctttaaaatt ctaacttgtg 2340 ctaacacaag catgatatgc ctagcattca aaggagatgg tatcaacaca gggaagtcag 2400 gggttccgta tatcactttg cataaggtgg aaaaagacat acagccttat ttcatctcat 2460 tgtatacaaa ggaactgatc gtgtctttta agtgtgccaa ctactttatt aatatcatga 2520 gaccacagag attgaatcaa gttagacttc tcagtctatt taaagctcct agtaaagttc 2580 ccatcctttt ttcacaatat tctctgctga gcacagaaat aaagaagtgg ttgaaccaac 2640 catctgtaga tgtattcact tgtccagaga acaaaatcca atatcttcaa aagatattat 2700 tctcttctgt gatcataggt actgttacca aactaagtag aatgggaatc tttgatttca 2760 tgagatatgc aggtttttta ccactatcag attattcaaa tattaaggag tatatagctg 2820 aaaaatttga tcctgatata acaaatgtta ttgattgttt ttttgtttca gggatcaaaa 2880 ccctcctctt gaaaatggaa ggaatcaact tgagcaatag tattaagcca ttaacaattg 2940 atcaagaaaa tgatatgtca ggaggaatat cagatttaga tattatttgc cccattacag 3000 gatcaacatt gaagactata gaatgtctat ataataatgt ctatctagct atttatatga 3060 tgccaaagtc tcttcatact catgtacata atcttactgc tcttttaagt gtacctgcag 3120 aatgggaaat aaaatttaga gagaagatgg gtttcttgat agatgatgaa attaagccaa 3180 aaaaagaaat gttcaatgac tctggcccat tctctattaa cggggtatta aatgtgaaaa 3240 ctttatttga ttattacaag aaaaatatca ctaatgttgg tgcttgtagg tcaaacatag 3300 aagacaagga agattttttg tctgcaccgt ataaaataaa aaccttaaca tcttctaaga 3360 aatgctcaaa agcagatatc ataaagagtt ctgaaatagt ttcagctctg aaatcaacgc 3420 ttggaaagca gcctgatgat ataaagggat ctgatcttta tatattgaaa ggagttctga 3480 aatgttttga agaagataga gaatcgttga tgaaatttat ggaagttgaa ggtctggatg 3540 aaccaaaata cttgcatttc ttttctaaca tgatgtcagg ggataataaa attttgatga 3600 agacaaacca agataagttc tattacaaaa gtcacccttt aacagttgaa acatttatga 3660 aagtcaggta cggttatttt aaaacgacga cagttttgaa atcaaaaaaa gtaagtgaag 3720 aactatatga ccttatcaag gagttcaaca aaataacaga aatcgatcta gaagccttag 3780 aaagattagg tcggggtctg aaaggtaata gagtcacatt catacaactg ctagaattta 3840 ttttaatgaa atctagaact aatgctggca atacagactt tcttgtatct gtctttgaga 3900 aaatgcaaag aacaaaaatg gatagagaga tttatctcat gagcatgaag acaaagatga 3960 tgttgtattt tattgagcac acatacaagc atatcgccca atctgatcct tctgaggcaa 4020 tatctatatc tggagattac aaaataaaga acttagcatc actgtcatat gatactataa 4080 ctaactataa cacagcactt caaaagaacc tggaatgtaa aatggctttc ttgtcggcag 4140 atcaatcaaa gtggtctgca tcagatttaa cctacaaata catactagct gttataatga 4200 accctatatt gaccactgga gagataaact tgatgtgtga atgcataatg atgtatataa 4260 agttaaagag ggtgtgcatc cctactgata tattcctaaa ccttaaaaga ggtcaaacag 4320 agtacgggtc ttatgggact gctttatctg tattgacaga taatttggaa acaaacacat 4380 tcccagtgtc tatgaactgg ctacaaggga atctcaatta tttatcatct gtctaccatt 4440 cttgtgccat gataggttat gaaaaagcaa tgaaaaagat gaaagattat gattttacaa 4500 taagatggat ggtacactct gatgataatg ctacatctat agtagtcaga ggagacttaa 4560 agaaactttt gtccagcttt aactgttcta gtctgtctga attgctgttc cggagtattc 4620 agtcacattt taaaagttac tgtataacac tgaaccctaa gaaaagttat gcatcagaat 4680 ctgaagttga attcatatca gaaagaatta ttaatggtgc tgtgatacct ctgtactgta 4740 ggcatttggc caactgcagc acagaaagct ctcataatag ttattttgac gatttgatgt 4800 ctctttctat tcatattaca atgcttttaa gaaagggttg ccccaatgaa ttgataccat 4860 ttgcttatgc agcaatacaa gttcagtcac ttagcatata ttcaatgctg ccaggagaag 4920 agaacgacat agactcaatt gtcaaagcaa ttgatttccc tcttacaaaa agagagatcc 4980 ccatatgtgc agggggctgg atgcatgccc ctgttgagct gctatctatt ttaggaccgt 5040 cgtcaaacga ccagttgatc tactataaaa ttatattaga tttctttaat ttaaaagatt 5100 ttaatggctt gaaaaagaat gttaattctc taggttacat tgatttgagg atcaatgaac 5160 tgtttaaaag aattaaatat aaaaagataa catgtgctga caaaaagatg atatgtatgg 5220 tgaatttgtt caagacaagt ttaatgtctg aagactgtga cagcttaaat gtgggaatga 5280 aatttcaatc tatgataaca cagattataa aattacctag ttttgtcagt gaaggatctt 5340 tgtcaaaaaa ctctagtttc caagattttt gtaagctatt tccaaatcta aagaaaaaca 5400 ctgacatact caatgcacta aagcctgttg acttagatga aaggaacttg gatgagtgga 5460 gtgaatctaa gtttctgtct cagattcagt tggaagagtt aagcagacat atggcatctc 5520 atccagaatc atttttgatt gcaccaatga atgacaaaga ttatatttta acaaatcttt 5580 acatgtacag tagtgtaagt aaaagaaacc aaatgtcaaa tcaatcaact gaaaaacttg 5640 cattagatag aattttgagg tcgaaagcca aaacattcct ggacccagat tcaaaagaga 5700 tggtttctta taaagataac atgttcatga aaatgagaga aataatggat ccagcaggaa 5760 atgattttaa aattataagc acaatatctg gactaatggt aagagacatg aattttgaaa 5820 tggtagtatc cttaatggaa aacacagttg ccaatgcttc tattcctaaa gcaaattata 5880 atttcaggtg gttcattaca gaaaaagtgc cgagcataat tgaagggtca cccggtttga 5940 ttgtaatgtc agctgtctat ggtatggatt atctgataga attaggatta aaaaagttgc 6000 ctctaacaga gacttctata tctatattgc atgatatctt tggaaacagg aagacattcg 6060 atgacgttaa ggaatgcatc caagaagcca acggccaata taaaactgaa gaatttcaag 6120 atgctaatga actaaagagg tatgttttaa gtattaacta tatgatccaa tctcaaaaca 6180 agcttttatc gatcaataca tgtttttcta gaaaaaactt cccattctat tccaaatata 6240 atctaggtaa aacattcatt accaacactt tagccatatg gagcacaata tacagtcggt 6300 tgacaaacat caatttctac actaatttga attttgtcat tgatagaagt tctcgactca 6360 ttatatcgtt acagagggac atgaatctag agaaactgat agattgctgt gcttatattt 6420 cagatagatt gcagagcttg ttccctgata tgactataga atccgttaaa caaattctat 6480 cgagattaaa cttcaatgga gtggatctta tgagaaaaat gaaatctgag ataacagaag 6540 tgaaaagagc cataaacaac ataaagacat ctactcatgt cactctgtcc tttaggcctc 6600 aaatgattgc tatgagcaaa catgcagcat ggttatataa ttttggatac ataaatgaaa 6660 aagagtttaa atttgtaata gaccaaatca ggcaaagtga agtacattat attaagacag 6720 atgaacaaga tgtcagaggt tattatgtct ctggtcacac atacaagata ggaataaaga 6780 cccagtataa ttacgggcaa ctagccatgt caaatcaaga catatcaatc catctgcatt 6840 caccgtacga ataccaaaga gaggatgatg gaaaaatatg ggaagtccat gttaaatctg 6900 cttacaaact gcttcaaaaa ttattgatag acaaacagag tgccatcaaa acatttctca 6960 atattagaac cgaattaatg ccaaaccaat tttgtattca tgaaagttca aacaaaacac 7020 ttttgatatt gatcaacgat acaacaaaac caattacatt agaaagaatt aaatttaagg 7080 gtgatataaa atacatacct tcttctgatt ttgcttggaa tatgatgagc aaccaatcaa 7140 agtataagct acgcacagct gagacagggg agtgttatac agaactgtat aaaatgatag 7200 actatagcga tagtttagag aacaccatct tgaccaatct aaagaagagc ctggagtatg 7260 gaaatgagat ggagaatcta atagagcaat caacaagaga catagatgat gaagaaactg 7320 tagagtatat cagagattca gtagatcaga ttcataaatt agcagtagaa ggtctagaaa 7380 catgcaagac atcagaagaa ttcgaaaact atctcaagag ggttgatttc caatctactg 7440 tagatttcca taaggattta ttggaacaga ttgtcgaaga gagatatgga gcatcagcta 7500 gattggacaa tgcagtggat aaactaacta gatggacaaa tagcttgtca acattcaaag 7560 atgtctgtac catgttgaaa ttttcaatgg tcaatgattc aaaagggatt aaaacatata 7620 aagctaatgg agcagatttc tattcactat ctgcaagtga agtcatgact tcgcagggat 7680 ttgacttatt tgagctcttg aaactgataa aagcttgtga agcctgccac actagcaact 7740 cagtgctcaa tttgattgct tttaaaaata taaagaataa gacattcata cctgggttta 7800 aaaagaattt acctaacact gtacattttg attatgaaat gaagctgaac aatgaggtaa 7860 tgaataaatt ctatgaatat aaaacaatct ctttacaaga tataaagatc tctgacagag 7920 ttagaacagt tctagaaacc catgggttta gtgtaactgg gcagaattta aaattagaag 7980 aaatggattt agagctcaat ccagtggaaa tcatagacga ttcttctact tatgatcaaa 8040 ttgcaaggca gatgaggcta acgaagaaga aaagctcata tctgatacct gcaaacactt 8100 tgttattagg agagttaatg aagtttctga tgttatgcat taagggagaa gaacatgata 8160 taatgaaact gctgagaagc cattttgcca tgaagcctgt aagagaaaac aggttgcttt 8220 gtgttcaaga tgctgttatg acttgcagga taagtggttt tattcaaaga catttcctca 8280 atgacaaaaa agaaataatt ttgttgggtg tgtcagacag cttagaaaat tttatttctt 8340 tagcaacccc aaattatgca gtgcaagagc catttaaagc agaggcttta aaaaaaaagc 8400 ctccgctgga agtatatgac tctgggaaat acaagatatt gaagaatata agaagttata 8460 tagttgcaga tgtagaattc ctcacagaaa aatgcctgta ctcaaacata gccaatgagg 8520 aaataagcag catgatattt aacgctgtca gtaagatcga cttagagttg tccaatttga 8580 agcctgaaaa gagaaagaaa aggttagatt tgcatgaagt ctttaacaag tttttaggat 8640 caggatctac ttcctcagac caagaataaa agggggttaa gctatgggca agagaaaagg 8700 gataagaaac agaataggta atttgatttt tgaagcagca aaagagcatg atatcaaaaa 8760 gtatatattt aaaacaaaaa gataaaagat atcttaattc agtctggaat gaactgtagt 8820 tgtgatttct caacctgaca gtagagtcta aagtagtatt tcttagtaat tttgagactg 8880 agtttagaat acttttattt tgttgctcga ttgctct 8917 //