ID AF132852; SV 2; circular; genomic DNA; STD; VRL; 2613 BP. XX AC AF132852; XX DT 13-MAY-1999 (Rel. 59, Created) DT 19-APR-2006 (Rel. 87, Last updated, Version 5) XX DE Tomato golden mottle virus-[GT94-R2] segment DNA-A, complete sequence. XX KW . XX OS Tomato golden mottle virus-[GT94-R2] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2613 RA Nakhla M.K., Mejia L., Ramirez P., Karkashian J.P., Doyle M.M., RA Maxwell D.P.; RT "Molecular characterization and DNA-based detection methods for RT vegetable-associated geminiviruses in Central America"; RL Unpublished. XX RN [2] RP 1-2613 RA Nakhla M.K., Maxwell D.P.; RT ; RL Submitted (03-MAR-1999) to the INSDC. RL Plant Pathology, University of Wisconsin-Madison, 1630 Linden Dr., Madison, RL WI 53706-1598, USA XX RN [3] RC Sequence update by submitter RP 1-2613 RA Nakhla M.K., Maxwell D.P.; RT ; RL Submitted (19-MAR-2001) to the INSDC. RL Plant Pathology, University of Wisconsin-Madison, 1630 Linden Dr., Madison, RL WI 53706-1598, USA XX DR MD5; 9325fac3ccbb9bb8f585575a10742b65. XX CC On Mar 19, 2001 this sequence version replaced gi:4809020. XX FH Key Location/Qualifiers FH FT source 1..2613 FT /organism="Tomato golden mottle virus-[GT94-R2]" FT /segment="DNA-A" FT /host="tomato" FT /isolate="GT94-R2" FT /mol_type="genomic DNA" FT /country="Guatemala:Laguna de Retana" FT /collected_by="L. Mejia and D.P. Maxwell" FT /collection_date="May-1994" FT /clone="pTGTA2" FT /db_xref="taxon:223343" FT misc_feature join(2477..2613,1..13) FT /note="ori region" FT gene 196..951 FT /gene="cp" FT /note="av1 gene" FT CDS 196..951 FT /codon_start=1 FT /gene="cp" FT /product="coat protein" FT /note="capsid protein" FT /db_xref="GOA:Q9WHH6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:Q9WHH6" FT /protein_id="AAD30060.2" FT /translation="MPKRDAPWRLMGGTSKVSRSFNQVSRTGTGPKFDKAHAWVNRPMY FT RKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV FT KNDLRDRFQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSISN" FT gene complement(1439..2479) FT /gene="rep" FT /note="ac1 gene" FT CDS complement(1439..2479) FT /codon_start=1 FT /gene="rep" FT /product="replication-associated protein" FT /note="Rep protein" FT /db_xref="GOA:Q9WHH5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q9WHH5" FT /protein_id="AAD30059.2" FT /translation="MPLPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIK FT ICRELHENGEPHLHVLVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGQGQIDGRSARGGQQTANDSYAKALNAVGVQEALQILKEEQPRDFVKDFH FT NLKGNLEKIFAKAPEPWVPPFPLSSFNNMPEELQTWADDYFGNGAAARTLRPISIIIEG FT DSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQ FT TDWQTNCKYRKPFQIKGGIPSIVLCNPGEGPFYKYYLDKQENTHLKAWTLHNAKFVFLD FT APLYQT" XX SQ Sequence 2613 BP; 685 A; 525 C; 606 G; 797 T; 0 other; accggatggc cgcgcgattt tttacccgac ccggcccatt aaaaaatata tccgggccat 60 gcaatgatga aaaatttgac cgtccaatca gaagatgcct gctgggtcta attagtggtc 120 cttgggagac aagaatggac ccggatatct ataaatatta aagtgaatcc cactattgga 180 tatctttaat ttgaaatgcc aaagcgcgat gccccgtggc gattgatggg ggggacctca 240 aaagtgagcc ggtccttcaa ccaagtctcc cggactggta ctgggcctaa atttgataaa 300 gcccatgctt gggttaacag gcctatgtat aggaagccca ggatatatcg ggcttggaga 360 acacccgacg ttcctcgagg atgtgaaggc ccatgtaagg tccagtcatt tgaacagcgt 420 catgatatct cccatgttgg taaggtgatg tgcatatcgg acgtcacccg tggcaacggt 480 atcacccacc gcgttggtaa gcgtttttgt gttaagtccg tttatatatt aggtaagatt 540 tggatggatg acaacatcaa gttgaaaaac cacacgaaca gcgtcatgtt ctggttggtc 600 agggatagga gaccatatgg tactcctatg gattttggtc aagtgttcaa catgtacgac 660 aatgagccta gtactgctac tgtgaagaac gatcttcgtg atcgttttca agtagtccac 720 agattttatg ctaaggtcac tggtggtcag tatgctagca atgagcaggc tcttgtccga 780 cgattctgga aggtgaacaa ccatgtggtg tacaaccacc aagaagccgg gaagtacgag 840 aatcataccg agaatgccct gttattgtat atggcatgta cacatgcctc taatcccgtg 900 tatgctactt tgaaaattcg gatctatttt tatgattcga taagtaatta ataaaatttg 960 tattttattg aatgtctttc caatacgtga attacatatg gtttgtctgt tgcgaagtga 1020 acagcgcgaa ttacattatt aagtgaaata acacctaatc tatctaaata taataaaact 1080 aaactcctaa accgattcaa ataagtcgtc ccagaagccg tcagggatgt cgtccagact 1140 tggaaattta ggtatgcctt gtgtagatcc aaagctctcc tcacgttgtg gttgaacctg 1200 tactgcacgt ggtatatcct gatgttcgtg tacagtggat cctctacgtt gtatatcttg 1260 aaatagaggg gatttggaac atcccagata aaaacgccat tccttgcttg atgagcagtg 1320 atgggttccc ctgtgcgtga atccattatt ggcgcagttg atgtgtacgt atattgaaca 1380 gccgcagtcc aagtctatac gttttcgacg tattcccttt cgttttgcaa tcctgtgttt 1440 aggtttgata gaggggggcg tcgaggaaga cgaattttgc attgtgaagt gtccacgctt 1500 tgagatgtgt gttttcctgt ttgtcgagat agtatttata gaaaggcccc tcaccaggat 1560 tgcagagcac gatagatgga atgccccctt taatttggaa tggttttcgg tatttacagt 1620 tggtctgcca gtctgtctgg gccccaatga gctctttcca gtgtttcatc tttagatagt 1680 gcggtggtac gtcatcgatg acgttataca taacatcgtt tgagtaaact ctagaattga 1740 aatctagatg accactcaga taattatgaa ttcctaatga acgagcccac attgtttttc 1800 cagttcttga atcaccttcg atgatgatac tgataggtct taatgtccgc gcagcggcac 1860 catttccaaa ataatcatca gcccatgtct gtaactcctc tggcatgttg ttgaacgagg 1920 agagtggaaa tggaggaacc catggttctg gagcctttgc aaatatcttc tcaaggttac 1980 ccttgagatt gtgaaaatct ttaacaaaat ccctaggctg ttcttccttt aaaatttgaa 2040 gtgcttcttg cactccaact gcgttaagcg ccttggcata tgaatcgttt gcagtctgct 2100 gacctcctct agcagatctg ccgtcgattt ggccttgtcc ccattcgagg gtatctccat 2160 ctttgtcgat atatgatttg acgtcggagc tagatttagc tccctgaatg ttcggatgga 2220 aatgtgctga cctggttggg gataccaggt cgaattgacg ttcattcgtg atctggactt 2280 ttccttcaag ttggacaaga acatggagat gaggttcccc attctcgtga agctctctgc 2340 aaatcttgat atatctttta ttcgaagtta attgtattga ctgtaattgt tctaatgctt 2400 catctttcgt aagtgagcac agtgggtatg ttaggaagat atttttggct tgaagtctga 2460 aacgtcttgg taatggcata tttgtaatta aagggtgtct ccaattgagc tcctctcaaa 2520 cttgctgaat gaattggagt attggaagta caatttatac taaaacctca gatagcgctt 2580 ggagacacgt ggcggccatc cgtttataat att 2613 //