ID AF129820; SV 1; linear; mRNA; STD; VRL; 3901 BP. XX AC AF129820; XX DT 05-JUL-1999 (Rel. 60, Created) DT 05-JUL-1999 (Rel. 60, Last updated, Version 1) XX DE Reovirus 1 Lang L3 gene segment major core protein lambda 1 mRNA, complete DE cds. XX KW . XX OS Mammalian orthoreovirus 1 Lang OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Orthoreovirus. XX RN [1] RP 1-3901 RX DOI; 10.1006/viro.1999.9707. RX PUBMED; 10329567. RA Harrison S.J., Farsetta D.L., Kim J., Noble S., Broering T.J., Nibert M.L.; RT "Mammalian reovirus L3 gene sequences and evidence for a distinct RT amino-terminal region of the lambda1 protein"; RL Virology 258(1):54-64(1999). XX RN [2] RP 1-3901 RA Harrison S.J., Farsetta D.L., Kim J., Noble S., Broering T.J., Nibert M.L.; RT ; RL Submitted (22-FEB-1999) to the INSDC. RL Molecular Virology, University of Wisconsin-Madison, 1525 Linden Drive, RL Madison, WI 53706, USA XX DR MD5; 0c1c557c9a9300392afdffa23fd0d89a. DR EuropePMC; PMC92974; 11425715. XX FH Key Location/Qualifiers FH FT source 1..3901 FT /organism="Mammalian orthoreovirus 1 Lang" FT /chromosome="L3 gene segment" FT /strain="Lang" FT /serotype="1" FT /mol_type="mRNA" FT /note="core-transcribed mRNA" FT /db_xref="taxon:10884" FT primer_bind <1..2 FT /note="region fixed by primer" FT CDS 14..3841 FT /codon_start=1 FT /product="major core protein lambda 1" FT /note="RNA-binding protein; zinc-binding protein; putative FT NTPase; putative RNA helicase; putative RNA 5' triphosphate FT phosphohydrolase." FT /db_xref="GOA:Q9WAB2" FT /db_xref="InterPro:IPR013087" FT /db_xref="PDB:2CSE" FT /db_xref="UniProtKB/Swiss-Prot:Q9WAB2" FT /protein_id="AAD42304.1" FT /translation="MKRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEP FT GTSNREQYRARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADE FT ATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVS FT KHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITE FT FISSWQNHPIVQVSADVENKKTAQLLHADTPRLVTWDAGLCTSFKIVPIVPAQVPQDVL FT AYTFFTSSYAIQSPFPEAAVSRIVVHTRWASNVDFDRDSSVIMAPPTENNIHLFKQLLN FT TETLSVRGANPLMFRANVLHMLLEFVLDNLYLNRHTGFSQDHTPFTEGANLRSLPGPDA FT EKWYSIMYPTRMGTPNVSKICNFVASCVRNRVGRFDRAQMMNGAMSEWVDVFETSDALT FT VSIRGRWMARLARMNINPTEIEWALTECAQGYVTVTSPYAPSVNRLMPYRISNAERQIS FT QIIRIMNIGNNATVIQPVLQDISVLLQRISPLQIDPTIISNTMSTVSESTTQTLSPASS FT ILGKLRPSNSDFSSFRVALAGWLYNGVVTTVIDDSSYPKDGGSVTSLENLWDFFILALA FT LPLTTDPCAPVKAFMTLANMMVGFETIPMDNQIYTQSRRASAFSTPHTWPRCFMNIQLI FT SPIDAPILRQWAEIIHRYWPNPSQIRYGAPNVFGSANLFTPPEVLLLPIDHQPANVTTP FT TLDFTNELTNWRARVCELMKNLVDNQRYQPGWTQSLVSSMRGTLDKLKLIKSMTPMYLQ FT QLAPVELAVIAPMLPFPPFQVPYVRLDRDRVPTMVGVTRQSRDTITQPALSLSTTNTTV FT GVPLALDARAITVALLSGKYPPDLVTNVWYADAIYPMYADTEVFSNLQRDMITCEAVQT FT LVTLVAQISETQYPVDRYLDWIPSLRASAATAATFAEWVNTSMKTAFDLSDMLLEPLLS FT GDPRMTQLAIQYQQYNGRTFNVIPEMPGSVIADCVQLTAEVFNHEYNLFGIARGDIIIG FT RVQSTHLWSPLAPPPDLVFDRDTPGVHIFGRDCRISFGMNGAAPMIRDETGMMVPFEGN FT WIFPLALWQMNTRYFNQQFDAWIKTGELRIRIEMGAYPYMLHYYDPRQYANAWNLTSAW FT LEEITPTSIPSVPFMVPISSDHDISSAPAVQYIISTEYNDRSLFCTNSSSPQTIAGPDK FT HIPVERYNILTNPDAPPTQIQLPEVVDLYNVVTRYAYETPPITAVVMGVP" FT primer_bind complement(3898..>3901) FT /note="region fixed by primer" XX SQ Sequence 3901 BP; 1047 A; 931 C; 911 G; 1012 T; 0 other; gctaatcgtc aggatgaagc ggattccaag gaagacaaag ggcaaatcca gcggaaaggg 60 caatgactca acagaaagat cggacgatgg ctcgagccaa ttacgagaca agcaaaacaa 120 taaggctggc cctgccacta cggagcctgg cacatctaac cgagagcaat acagagcccg 180 accaggtatt gcatctgtgc agagggccac tgaaagtgca gaactgccca tgaagaataa 240 tgacgaaggg acgccagata agaaaggaaa tactaggggc gacttagtta atgagcatag 300 tgaggctaaa gacgaggcgg atgaagcgac gcagaagcag gcaaaagaca cagacaaaag 360 taaagcgcaa gtcacatatt cagacactgg tatcaataat gctaatgaac tgtcaagatc 420 tgggaatgtg gataatgagg gtggaagtaa tcagaagccg atgtccacca gaatagctga 480 agcaacgtct gctatagtgt cgaaacatcc tgcgcgtgtt gggttaccac ctaccgctag 540 cagtggtcat gggtatcagt gccacgtctg ttctgcagtc ctgtttagtc ctttagacct 600 agatgcccac gtcgcctcac atggtttgca tggtaacatg acattaacat cgagtgagat 660 tcagcgacat ataactgagt tcatcagctc atggcaaaat catcctattg ttcaagtttc 720 ggctgatgtc gaaaataaga agactgctca actgcttcac gctgacactc ctcgactcgt 780 cacttgggat gctggtttgt gtacttcgtt caaaatcgtc ccgattgtgc cagctcaggt 840 gccgcaggat gtactggcct atacgttttt cacctcttca tatgccatcc aatcaccgtt 900 tccagaggcg gcagtgtcta ggattgtggt gcatacgaga tgggcatcta atgttgactt 960 tgaccgagat tcgtctgtca tcatggcgcc acctacagaa aacaatatcc atttgtttaa 1020 gcagttacta aatactgaaa ccctgtctgt aaggggggct aatccgctaa tgtttagagc 1080 gaacgtgttg catatgttgc tggagttcgt attagataac ttgtatctga acagacatac 1140 gggattctct caagaccaca caccatttac tgagggtgct aatctgcgct cacttcctgg 1200 ccccgatgct gagaaatggt actcgattat gtatccaacg cgcatgggaa cgccgaatgt 1260 atcaaaaata tgtaatttcg tcgcctcttg tgtgcgaaat cgggttggac gatttgatcg 1320 agcacagatg atgaacggag ctatgtcaga gtgggtggat gtcttcgaga cttcagacgc 1380 gcttaccgtc tccattcgag gtcgatggat ggctagacta gctcgcatga acataaatcc 1440 aacagagatc gaatgggcgt tgactgaatg tgcacaagga tatgtgactg tcacaagtcc 1500 ttacgctcct agcgtaaata gattgatgcc ctatcgtatc tccaacgctg agcggcaaat 1560 atcacagata atcaggatca tgaacattgg caataacgcg acggtgatac aacctgttct 1620 gcaagatatt tcagtactcc ttcaacgcat atcaccactc caaatagatc caactattat 1680 ttccaacact atgtcaacag tctcggagtc tactactcag accctcagcc ccgcgtcctc 1740 aattttgggt aaactacgac cgagtaactc agatttctct agttttagag tcgcgttggc 1800 tggatggctt tataatggag ttgtgacgac ggtgattgat gatagttcat atccaaaaga 1860 cggtggcagc gtgacctcac ttgaaaatct gtgggatttc ttcatccttg cgcttgctct 1920 accactgaca actgacccct gtgcacctgt gaaagcattc atgaccttag ctaacatgat 1980 ggttggtttc gagacaatcc ctatggataa tcagatctat actcaatcga gacgcgcgag 2040 tgctttctca acgcctcaca cgtggccacg atgcttcatg aatatccagt taatttctcc 2100 aatcgatgct cctatcttgc gacagtgggc tgaaattatt catagatact ggcctaaccc 2160 ttcacagatt cgttatggtg caccgaacgt tttcggctcg gcaaatttgt tcactccacc 2220 tgaggtgctg ttattgccaa tcgatcatca accagctaat gtaacaacgc caacgctgga 2280 cttcaccaat gagttgacta attggcgcgc tcgtgtctgt gagcttatga agaatcttgt 2340 tgataatcaa agatatcaac ctggatggac acaaagtcta gtctcgtcaa tgcgcggaac 2400 gctagacaaa ttgaagttga ttaaatcgat gacacccatg tatctgcaac agctggctcc 2460 ggtagagtta gcagtgatag ctcccatgtt gcctttccca cctttccagg tgccctacgt 2520 ccgtctcgat cgtgatagag ttccaacaat ggtcggagta acacgacagt cacgagatac 2580 tattactcag ccagcgctat cgctgtcgac gaccaatact actgttggcg tgccactagc 2640 tctagacgcg agggctatca ccgttgcgct gttgtcaggg aaatatccgc cggatttagt 2700 gacaaatgta tggtacgctg atgccattta tccaatgtat gcagacactg aggtgttctc 2760 taatcttcag agagacatga ttacctgcga ggccgtgcag acattagtga ctctggtggc 2820 gcaaatatca gagacccagt atcctgtaga taggtatctt gattggatcc catcactgag 2880 agcatcggcg gcgacggcgg cgacatttgc tgagtgggtt aatacttcaa tgaagacggc 2940 gtttgatttg tctgacatgc tgttagagcc tctcctaagc ggtgatccga ggatgactca 3000 actagcgatt cagtatcagc aatacaatgg cagaacgttt aatgtcatac ctgaaatgcc 3060 aggttcagtt attgctgact gcgttcaact aacagcagaa gtcttcaatc acgaatataa 3120 cctgtttggg attgcgcggg gtgatatcat cattggccgt gttcagtcga cacatttgtg 3180 gtcaccgctg gctcctccac ctgacctggt gtttgatcgt gacactcctg gtgttcacat 3240 cttcggacga gattgccgca tatcgtttgg aatgaatggc gccgcgccaa tgattagaga 3300 tgagactgga atgatggtgc cttttgaagg aaattggatc ttcccactgg cgctttggca 3360 aatgaataca cgatatttta atcaacaatt cgacgcgtgg attaagacag gagagttgcg 3420 aatccgtatt gagatgggcg cgtatccata tatgttgcat tactatgatc cacgtcagta 3480 cgctaatgca tggaatttaa catccgcctg gcttgaagaa attacaccga cgagcatccc 3540 atccgtgcct ttcatggtgc ccatttcaag tgatcatgac atttcctctg ccccagctgt 3600 ccaatacatc atctcgactg aatataatga tcggtcttta ttctgcacta actcatcatc 3660 tccccaaact atcgctggac cagacaaaca cattccagtt gaaagatata acattctgac 3720 caaccccgac gctccaccca cgcagataca actgcctgaa gttgttgact tgtataacgt 3780 cgtcacacgc tatgcgtatg agactccgcc tattaccgct gtcgttatgg gtgttccttg 3840 atcctcatcc tcccaacagg tgctagagca tcgcgctcga tgctagttgg gccgattcat 3900 c 3901 //