ID AF127178; SV 1; linear; genomic RNA; STD; VRL; 4674 BP. XX AC AF127178; XX DT 02-FEB-2000 (Rel. 62, Created) DT 31-MAY-2001 (Rel. 67, Last updated, Version 2) XX DE Trichomonas vaginalis virus II capsid protein (cap) gene, complete cds; and DE RNA-dependent RNA polymerase (pol) gene, partial cds. XX KW . XX OS Trichomonas vaginalis virus 2 OC Viruses; Riboviria; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4674 RX DOI; 10.1006/viro.1999.0129. RX PUBMED; 10662630. RA Bessarab I.N., Liu H.W., Ip C.F., Tai J.H.; RT "The complete cDNA sequence of a type II Trichomonas vaginalis virus"; RL Virology 267(2):350-359(2000). XX RN [2] RP 1-4674 RA Bessarab I.N., Tai J.-H.; RT ; RL Submitted (10-FEB-1999) to the INSDC. RL Division of Infectious Diseases, Institute of Biomedical Sciences, Academia RL Sinica, Taipei 11529, Taiwan, R.O.C. XX DR MD5; dd63242f2591f605d0119300ba5dad7f. DR EuropePMC; PMC2526308; 17570970. DR EuropePMC; PMC3126235; 21345965. XX FH Key Location/Qualifiers FH FT source 1..4674 FT /organism="Trichomonas vaginalis virus 2" FT /host="Trichomonas vaginali T1" FT /mol_type="genomic RNA" FT /db_xref="taxon:674954" FT CDS 296..2425 FT /codon_start=1 FT /gene="cap" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:Q9JE95" FT /protein_id="AAF29444.1" FT /translation="MASTLISSDNSATLGKDSEVINNTNTSPPDNPSSDHSNPRLTKVL FT DEMSKKPCVNINEIRKMIRNFQPQFIQPRNGNRPNAQPRTVDSFEWVVRIQSTVETQLL FT GATNTVPQQTLNLDISFTDDSTTITPASIPGSISMLDNSRHIPAIQSMIQNFKARYLGS FT LQDTAQLQSPQYPQLLAYLFGQLIAIKDRLDLFRPSNPLSLADALFGFTLAQNARPRYD FT DHRHAKACQGPLVIPAATNSDCGPCGFVQINANQGLTLPLGACLFVNPETVNDQSFQDF FT LWLIFATHHRMPNQMQNNWPFSLNIVSTCAAPGRQAPHAGELTDERVRLALDTGHRILL FT SMFNDDEETLRYYQRKGIETMFRPCCFYTEGGLLRKATRYVSMVPLNGLYYYNGATSYV FT VSPIHTDAHPGITAAIESFVDIMVLQAVFSFSGPKVVAAKVNASQIDAAMVFGPAVAEG FT DGFVYDPLRPAPPLSAFYTEFIHRPAEQRIFQMAMSQIYGSHAPLIIANVINSIHNCKT FT KIVNNKLRATFVRRPPGAPHLKADTAIINRFHDPELAYALGILADGIAPLDGSHEYNVL FT DELDYLFNGGDIRNCFGLNALNTRGLGQIVHIRPKREPGKRPRRGFYTTLDGQVHPVTQ FT DAPLDEIYHWRDHGNLTRPYSCHILDSQGLEFADVSNGRSRGKILVVVNSPLKTCAAYQ FT GPSFAPKPGSAMWNE" FT CDS <2302..4605 FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /db_xref="GOA:Q9JE94" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:Q9JE94" FT /protein_id="AAF29445.1" FT /translation="RFQRTVTRKDPCGRQLTPQDMRCLPGPQLRAKAGQRHVERINQCG FT GSVIYPRLSTARACSLSAIDKMTLALAHQLCYLYKSSDLHRQLDTMIPQSYLTFLEWLL FT RIDPHNEKSSIRHFPSQDNHEVITHSLRNLTKEQEITLFPIKDIVQANRRVNAYARNLL FT DASPLPDFALQQMLLPNTANDVVCAILLLGEVLWMLRCPISIIVNISRAICRNDSFLKD FT LSDFNKMLGLTKIPIANCLTELNTLQGRGVTSSDAKRDLTHRIADVNPHEAKISRENLR FT EAINQIYKEEITRKEVPDTFKQHVFTSPLWVKKGAHHHPLFGSYDNRLEFVENVDLDRV FT LKSHPAVYITQAPKLEHGKTRFIYNCDTVSYIYFDYILNYIESVWSNKHVLLNPDYMNP FT VIFSTLNYDEYCMLDYTDFNSQHSIESMKQVFLCLFPFLPRSMHSILQWCVTSFDNMYI FT NKTHWNSTLPSGHRATTFINSVLNRAYLLPFLQVANAFHTGDDVLLCGKADYATLINTV FT PYELNKTKQSFGPSAEFLRLHKHNDQVSGYPARAISSLVSGNWLSFANPLWQPSLLSIM FT QQLYTISARSGLLPYIPVTMKLEVQRRYDLRSRITNGLFSGDIVPSGCPCYKSNAALLS FT AVVPDTVVKAPPTFYDLRTLDILKQTSPWINSASRYMDLLERRHMESDNKNVIYSIQYL FT PSKMLPMIDVDPADATPLRKRYHPRSHIAHPLPRDAHLKELRFATCRVGPATAIRLGSL FT WPANRINLIKPVYV" XX SQ Sequence 4674 BP; 1310 A; 1253 C; 883 G; 1226 T; 2 other; ctttgaagga gtgacgacct ttaaagccca ggcctaatca gcctggtcag acactcctgg 60 ggtccatcag gagacggatc gctaacgcga actggatgtc agtgtcaaaa gccttgtgcg 120 ccatggatac ttggtacact tttacgggag taggtgcccc gcgaactctg gacagtttat 180 tgggatttaa aactgtactc tgaattgcta gccttatgca attgacgtgt attgagaggg 240 cttatttgtg gctttcatac tagtattgtg tgatygtcta catttaatta cgataatggc 300 ttcgacgcta atatcgtctg ataattctgc cacgttaggc aaagatagtg aagttatcaa 360 caacacaaat acttcaccac ccgacaatcc atctagtgac cactcaaatc cccggttaac 420 aaaggttcta gatgagatgt ccaaaaaacc atgtgttaat ataaacgaaa taagaaaaat 480 gattagaaat tttcaacctc aatttattca acctcgcaac ggaaaccgtc caaatgccca 540 gcctcgcaca gtagattctt tcgaatgggt cgttcgtatc caaagcaccg tcgagactca 600 attacttggt gctacaaata ctgttcctca acaaactctt aatcttgata tttcttttac 660 tgatgattct actactatta ctccagcttc aattccaggc tcgatctcaa tgctcgataa 720 ttctcgtcac atcccagcaa tccaaagtat gatccagaac ttcaaggctc gttatttagg 780 ctctttacaa gacactgccc agctccagtc cccacagtat ccacaacttc tcgcttactt 840 attcggccag ctaatcgcga ttaaggatcg cctcgatctc ttcaggccat caaatccact 900 ttctctcgct gacgctttgt tcggcttcac tttagctcaa aacgctcgcc cacgttacga 960 cgaccacaga cacgctaaag catgccaagg acccctcgtt attccagcag ctactaatag 1020 tgactgcggt ccctgcggct tcgtacagat caacgcaaat caaggcctca ctctccctct 1080 tggcgcttgt cttttcgtca atccagaaac agttaatgat caatctttcc aagatttcct 1140 ctggctcatc ttcgcaacac accaccgcat gccaaatcaa atgcagaaca attggccgtt 1200 ttctctcaac atcgtttcaa catgtgcggc tcctggtcgt caagcccctc acgccggtga 1260 actcactgat gagagggtca gactcgccct tgatacaggc caccgcattt tgctttctat 1320 gttcaatgat gatgaagaaa ctctccgtta ttatcaacgc aaaggaatcg aaacaatgtt 1380 cagaccatgc tgcttctaca ctgagggcgg cttactcaga aaggctacca gatacgtttc 1440 aatggtccca ctcaacggcc tatattatta caatggtgcg acctcatacg ttgtctcccc 1500 aatccatacc gatgcgcatc ctggaattac agcagctatc gaatccttcg tcgacattat 1560 ggtcttacaa gcagtcttct ccttttccgg tcccaaagtt gtcgctgcta aagtcaatgc 1620 cagccaaatc gatgcagcta tggtcttcgg ccccgctgtc gctgaaggag acggcttcgt 1680 ctacgaccca ctccgtccag cacctccact ttccgcgttc tacaccgaat tcatccacag 1740 accagccgaa caacgcatct tccagatggc gatgagccaa atctacggat cacatgctcc 1800 tctcatcatt gccaacgtca tcaactccat tcacaactgc aagacaaaga tcgttaacaa 1860 caaattacgc gccactttcg ttcgtcgccc acccggcgcc cctcatctca aggccgatac 1920 tgctatcatc aaccgcttcc acgatccaga actcgcctac gctctcggaa tcctcgccga 1980 tggcattgct cctctcgatg gctcgcacga gtacaatgtc cttgatgaac tcgactactt 2040 attcaatggt ggcgacattc gcaattgctt cggcctcaac gccctcaaca cccgtggttt 2100 gggccaaatc gttcacatcc ggccaaaacg cgagccggga aaaagacctc gccgcggttt 2160 ctacaccaca ctcgatggac aggttcaccc ygttacacaa gatgctccac tcgatgagat 2220 ttaccattgg cgcgaccatg gaaatctcac acgtccatat tcgtgccaca tcctcgacag 2280 tcaaggactc gagtttgctg acgtttccaa cggacggtca cgcggaaaga tccttgtggt 2340 cgtcaactca cccctcaaga catgcgctgc ctaccagggc cccagcttcg cgccaaagcc 2400 gggcagcgcc atgtggaacg aataaaccaa tgcgggggca gcgtcatcta tccgcgcttg 2460 agcactgctc gcgcctgcag cttgtctgcc attgataaga tgacgttggc cctcgcacac 2520 caactgtgct acctatataa gtcttcagac ttacaccgac agttggacac catgatacca 2580 caatcctact taacatttct tgaatggcta ctcagaatcg accctcacaa tgaaaaaagc 2640 tcaattcgtc acttcccaag tcaagacaat catgaagtca ttacacacag tctaagaaac 2700 cttactaaag aacaagaaat cacactgttt ccaatcaaag acatagtcca agctaaccgt 2760 cgcgtgaatg cttacgcgcg aaatcttctc gatgcttcac cgcttccaga ttttgcccta 2820 caacagatgc tcttaccaaa tacagcaaat gatgtagtct gtgcaatctt actactcggt 2880 gaagtattgt ggatgcttcg ctgcccaatc tcaatcatcg tgaacatttc acgtgcaata 2940 tgtcgcaatg atagtttttt gaaggattta tctgacttca ataagatgtt aggcttaacc 3000 aagataccta tagctaactg cttaacagaa ttgaatactt tacaaggtcg tggagtaact 3060 tcaagcgatg ccaaaagaga cttgacccac cgaattgccg atgtcaatcc tcatgaggcg 3120 aaaataagta gagagaatct cagagaagca atcaatcaaa tatacaagga agaaattact 3180 aggaaggaag ttcctgatac gttcaaacaa catgtattca catctccttt atgggttaag 3240 aaaggtgcac accatcatcc actatttggg tcttatgaca atcggctgga gtttgttgag 3300 aatgtagact tagacagggt cttaaaatca caccctgctg tctatatcac gcaagcgccg 3360 aaacttgaac atggtaagac tcgattcatt tacaattgcg atacagtcag ttacatttac 3420 tttgattaca ttttgaatta tatcgagagt gtctggtcta ataaacatgt gctcctgaat 3480 cctgattaca tgaacccagt catcttcagt actcttaact atgacgaata ctgcatgtta 3540 gattacactg acttcaactc acagcactcc atcgaaagca tgaaacaggt gtttttatgt 3600 ctttttccct tcctgccaag gtctatgcac tctattttac aatggtgcgt cacgtctttc 3660 gacaatatgt atatcaacaa gactcattgg aattccacac taccgtcagg acatagagcg 3720 acaacattta ttaattctgt cctgaacagg gcttatttac ttccatttct acaagtcgct 3780 aacgcgttcc atacaggcga cgatgtactg ttatgcggaa aggcagacta cgccacactt 3840 atcaacactg taccttacga actcaacaag actaagcaat cattcggacc ctcggctgaa 3900 tttctgcgac ttcacaaaca caacgaccaa gtctctggtt acccggcacg tgcaattagc 3960 agtctcgtaa gcggcaactg gttgtcattc gccaacccac tatggcaacc ttcgctactg 4020 tcaattatgc aacaattgta cacgatatcg gcaaggtcag gtctgttacc atatattcct 4080 gtaacaatga agttagaagt ccagcggcgt tatgatttgc gttcacgaat taccaacgga 4140 ttgttctctg gtgatatagt tccaagcggt tgcccttgtt ataagtcaaa tgcggcttta 4200 ctaagcgcag tagttcctga cactgtagta aaggctcccc ccacctttta tgacttacgt 4260 acattggata tcctaaagca aacatcacct tggatcaatt cagcgtccag atatatggac 4320 ctcctggaac gacgacatat ggaatctgac aataaaaatg ttatatatag tatccaatac 4380 ctaccatcta agatgctacc aatgattgat gttgaccctg cagacgctac cccattacga 4440 aaacggtatc acccacgttc tcacatcgca cacccactcc cacgagatgc tcatcttaag 4500 gaattaagat ttgcaacgtg cagagtgggc ccggctactg cgataagatt aggatcgctt 4560 tggcctgcga atagaatcaa cctaatcaag ccagtctacg tttaagtaag actgacaaaa 4620 tcttacataa ctactcggtt agagtaggag agtaatatca actcttacgt caac 4674 //