ID AF119795; SV 2; linear; genomic RNA; STD; VRL; 7436 BP. XX AC AF119795; XX DT 29-MAR-1999 (Rel. 59, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Enterovirus 71 strain TW/2272/98 polyprotein gene, complete cds. XX KW . XX OS Enterovirus A71 OC Viruses; Riboviria; Picornavirales; Picornaviridae; Enterovirus; OC Enterovirus A. XX RN [1] RP 1-7436 RX DOI; 10.1016/S0168-1702(00)00162-3. RX PUBMED; 10958984. RA Shih S.-R., Ho M.-S., Lin K.-H., Wu S.-L., Chen Y.-T., Wu C.-N., Lin T.-Y., RA Chang L.-Y., Tsao K.-C., Ning H.-C., Chang P.-Y., Jung S.-M., Hsueh C., RA Chang K.S.; RT "Genetic analysis of enterovirus 71 isolated from fatal and non-fatal cases RT of hand, foot and mouth disease during an epidemic in Taiwan, 1998"; RL Virus Res. 68(2):127-136(2000). XX RN [2] RP 1-7436 RA Shih S.-R., Ho M.-S., Suen P.-C., Lin K.-H., Tsao K.-C., Wu S.-L., RA Chen Y.-T., Wu C.-N., Ning H.-C., Chang P.-Y., Chang K.S.S., Lin T.-Y.; RT ; RL Submitted (12-JAN-1999) to the INSDC. RL Medical Technology, Chang Gung University, 259 Wen-Hua 1st Rd. Kwei-Shan, RL Tao-Yuan, Taiwan 333, Taiwan XX RN [3] RC Sequence update by submitter RP 1-7436 RA Shih S.-R., Ho M.-S., Suen P.-C., Lin K.-H., Tsao K.-C., Wu S.-L., RA Chen Y.-T., Wu C.-N., Ning H.-C., Chang P.-Y., Chang K.S.S., Lin T.-Y.; RT ; RL Submitted (19-JUL-1999) to the INSDC. RL Medical Technology, Chang Gung University, 259 Wen-Hua 1st Rd. Kwei-Shan, RL Tao-Yuan, Taiwan 333, Taiwan XX DR MD5; 395714176164dbcd9703e73cda7a8b92. DR EuropePMC; PMC1489440; 16757623. DR EuropePMC; PMC1569848; 16939656. DR EuropePMC; PMC2566106; 18650362. DR EuropePMC; PMC2732463; 11927028. DR EuropePMC; PMC3302533; 22278238. DR EuropePMC; PMC3944068; 24598878. DR EuropePMC; PMC415548; 15122971. DR RFAM; RF00048; Entero_CRE. DR RFAM; RF00229; IRES_Picorna. DR RFAM; RF00386; Entero_5_CRE. XX CC On Jul 19, 1999 this sequence version replaced gi:4530464. XX FH Key Location/Qualifiers FH FT source 1..7436 FT /organism="Enterovirus A71" FT /strain="TW/2272/98" FT /mol_type="genomic RNA" FT /country="Taiwan" FT /db_xref="taxon:39054" FT 5'UTR 1..743 FT mat_peptide 744..950 FT /product="capsid protein VP4" FT CDS 744..7325 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:Q9WQJ0" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR002527" FT /db_xref="InterPro:IPR003138" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR036203" FT /db_xref="PDB:4N43" FT /db_xref="UniProtKB/TrEMBL:Q9WQJ0" FT /protein_id="AAD22045.1" FT /translation="MGSQVSTQRSGSHENSNSATEGSTINYTTINYYKDSYAATAGKQS FT LKQDPDKFANPVKDIFTEMAAPLKSPSAEACGYSDRVAQLTIGNSTITTQEAANIIVGY FT GEWPSYCSDSDATAVDKPTRPDVSVNRFYTLDTKLWEKSSKGWYWKFPDVLTETGVFGQ FT NAQFHYLYRSGFCIHVQCNASKFHQGALLVAVLPEYVIGTVAGGTGTEDSHPPYKQTQP FT GADGFELQHPYVLDAGIPISQLTVCPHQWINLRTNNCATIIVPYINALPFDSALNHCNF FT GLLVVPISPLDYDQGATPVIPITITLAPMCSEFAGLRQAVTQGFPTELKPGTNQFLTTD FT DGVSAPILPNFHPTPCIHIPGEVRNLLELCQVETILEVNNVPTNATSLMERLRFPVSAQ FT AGKGELCAVFRADPGRSGPWQSTLLGQLCGYYTQWSGSLEVTFMFTGSFMATGKMLIAY FT TPPGGPLPKDRATAMLGTDVIWVFGCQSSVTLVIPWISNTHYRAHARDGVFDYYTTGLV FT SIWYQTNYVVPIGAPNTAYIIALAAAQKNFTMKLCKDASDILQTGTIQGDRVADVIESS FT IGDSVSRALTRALPAPTGQDTQVSSHRLDTGEVPALQAAEIGASSNTSDESMIETRCVL FT NSHSTAETTLDSFFSRAGLVGEIDLPLEGTTNPNGYANWDIDITGYAQMRRKVELFTYM FT RFDAEFTFVACTPSGQVVPQLLQYMFVPPGAPKPDSRESLAWQTATNPSVFVKLXDPPA FT QVSVPFMSPASAYQWFYDGYPTFGEHKQEKDLEYGACPNNMMGTFSVRTVGTSKSKYPL FT VIRIYMRMKHVRXCQXPPIXNQNYLFKANPNYAGNSIKPTGASRTAITTLGKFGQQSGA FT IYVGNFRVVNRHLATHNDWANLVWEDSSRDLLVSSTTAQGCDTIARCNCQTGVYYCNSM FT RKHYPVSFSKPSLIFVEASEYYPARYQSHLMLAVGHSEPGDCGGILRCQHGVVGIVSTG FT GNGLVGFADVRDLLWLDDEAMEQGVSDYIKGLGDAFGMGFTGAVSREVEALKSYLTGSE FT GAVEKILKNLVKLISALVIVIRSDYDMVTLTATLALIGCHGSPWAWVKSKTASILGIPM FT AQKQSASWLKKFNDAANAAKGLEWISNKISKFIDWLKEKIVPAAKEKVEFLNNLKQLPL FT LENQISNLEQSAASQEDLEAMFGNLSYLAHFCRKFQPLYATEAKRVYALEKRMNNYMQF FT KSKHRIEPVCLIIRGSPGTGKSLATGIIARAIADKYHSSVYSLTSDPDHFDGYQQQIVT FT AMDDLCQNPDGKDMSLFCQMVSTVDIMPPMASLEEKGVSFASKFVIASSTASTIIVPTV FT SDSDAIRRRFYMDCDIEGTDSYKTELGRLDAGRAVRLCSEDSTANFKRCSPLVCGKAIQ FT LRDSKSKVRYSVHTVVSDLIREYINRSVIGNTIEALFQGPPKFRPIRISLEEKLAPDAI FT SALLASVDSEEVRQYCRVQGWIVADSPTNVERHFNRVVLVMQSIATVVAVVSLVYVIYK FT LFAAFQGAYSGAHKQTLKKPVLRTATVQGPSLDFALSLLRRNISQGQTDQCHFTMLGVR FT DRLSVLRRHSQPGKTIWVEHKLVKIVDAAELVDEQGVNLELTLVTLDTNETFRASTRFI FT PETIRAASDAPLGINTEHMPSMVEXVGDVAQYGFLDHRGKATHRTMMYNFATKASQCGG FT VVAAVGKVIGIHIGGNGRQGFCAALKRGYFCSEQGEIQWMKSIKETGRLNISGPTRTKL FT EPSVFHDVFEGTKEPAVLTSKDPRLEVDFEQALFSKYVGNTLHEPDEFVKERPLHXSNQ FT LKQLDIKTTKMSMEDACYGTENLEAIDLHTSAGYPYSALGIKKKDILDPTTRDVSKMKF FT YMDKYGLDLPYSTYVKDELRAIDKIKKGKSRLIEASSLNDSMYLRMTFGHLYEAFHANP FT GTITGSAVGCNPDVFWSKLPILLPGSLFAFDYSGYDASLSPVWFRALEIVLREIGYSED FT AVCLIEGINHTHHVYRIKTYCVLGVMPSGCSGTSIFNSLFNNFFIRTLLIKTFKGIDLD FT ELNMVAYGDDVLASYPFPIDCLELARTGKEYGLTMTPADKSPCFNEVTWENATFLKRGF FT LPDYQFPFLIHPTMPMREIHESIRWTKDARSTQDHVRSLCLLAWHNGKEEYEKFVSAIR FT SVPIGKALAIPNYENLRRNWLELF" FT mat_peptide 951..1712 FT /product="capsid protein VP2" FT mat_peptide 1713..2438 FT /product="capsid protein VP3" FT mat_peptide 2439..3329 FT /product="capsid protein VP1" FT mat_peptide 3330..3779 FT /product="2A" FT mat_peptide 3780..4076 FT /product="2B" FT mat_peptide 4077..5063 FT /product="2C" FT mat_peptide 5064..5321 FT /product="3A" FT mat_peptide 5322..5387 FT /product="3B" FT mat_peptide 5388..5936 FT /product="3C" FT mat_peptide 5937..7322 FT /product="3D" FT 3'UTR 7323..7436 XX SQ Sequence 7436 BP; 2017 A; 1749 C; 1812 G; 1850 T; 8 other; ttaaaacagc tgtgggttgc acccacccac agggcccact gggcgctagc actctggtac 60 tgaggtacct ttgtgcgcct gtttttactc cccttccccc cgaagtaact tagaagctgt 120 aaatcagatc aatagcaggt gtggcacacc agtcatacct tgatcaagca cttctgtttc 180 cccggactga gtatcaatag gctgctcgcg cggctgaagg agaaaacgtt cgttacccga 240 ccaactactt cgagaagctt agtaccacca tgaacgaggc agggtgtttc gctcagcaca 300 accccagtgt agatcaggct gatgagtcac tgcaaccccc atgggcgacc atggcagtgg 360 ctgcgttggc ggcctgccca tggagaaatc catgggacgc tctaattctg acatggtgtg 420 aagagcctat tgagctagct ggtagtcctc cggcccctga atgcggctaa tcctaactgc 480 ggagcacatg ctcacaaacc agtgggtggt gtgtcgtaac gggcaactct gcagcggaac 540 cgactacttt gggtgtccgt gtttcctttt attcctatat tggctgctta tggtgacaat 600 caaaaagttg ttaccatata gctattggat tggccatccg gtgtgcaaca gggcaattgt 660 ttacctattt attggttttg taccattatc actgaagtct gtgatcactc tcaaattcat 720 tttgaccctc aacacaatca aacatgggct cacaggtgtc cacacagcgc tccggttcgc 780 acgaaaactc taactcagct accgagggtt ccactataaa ctatactaca attaattact 840 ataaagattc ctatgccgcc acagcaggta agcagagcct taagcaggac ccagacaagt 900 ttgcaaatcc tgtcaaagac atcttcactg aaatggcagc gccattaaaa tctccatctg 960 ccgaggcatg tggttacagc gatcgggtgg cacaattaac tattggcaat tctaccatca 1020 ctacgcaaga agcagcaaac atcatagttg gctatggtga gtggccttcc tactgttcgg 1080 actctgatgc tactgcagtg gacaaaccaa cgcgcccaga tgtttcggtg aataggtttt 1140 acacattgga cacaaaattg tgggagaaat catccaaggg gtggtactgg aaattcccgg 1200 atgtgttaac tgaaaccggg gtctttggtc aaaatgcaca gttccactac ctctatcggt 1260 cagggttctg cattcacgtg cagtgcaatg ctagtaagtt ccaccaagga gcactcctag 1320 tcgctgtcct cccagagtat gtcattggga cagtggcagg tggcacaggg acggaggata 1380 gccacccccc ttataagcag actcaacccg gtgctgatgg cttcgaattg caacacccgt 1440 acgtgcttga tgctggcatt ccaatatcac aattaacagt gtgcccacat cagtggatta 1500 atttgaggac caacaattgt gccacaataa tagtgccgta cataaacgca ctaccctttg 1560 attctgcctt gaaccattgt aactttggtc tgctggttgt gcctattagc ccgttagatt 1620 atgaccaagg tgcgacgcca gtgatcccca ttactatcac tttggcccca atgtgttctg 1680 aatttgcagg ccttagacaa gcagttacgc aagggtttcc tactgagctg aaacctggca 1740 caaaccaatt tttaaccact gacgatggcg tctcagcacc cattctgcca aactttcacc 1800 ccaccccgtg tatccatata cccggtgaag ttagaaactt gctagagcta tgccaggtgg 1860 agaccatttt agaggtcaac aatgtaccta cgaatgccac tagcttaatg gagagactgc 1920 gcttcccggt ctcagctcaa gccgggaaag gtgagctatg tgcagtgttc agagctgacc 1980 ctggacgaag tgggccatgg cagtccacct tgttgggcca gttgtgcggg tactacaccc 2040 aatggtcagg atcactggaa gtcaccttca tgttcaccgg gtcctttatg gctaccggca 2100 agatgctcat agcatacaca ccaccaggag gccccttacc caaggaccgg gcgaccgcca 2160 tgttgggcac ggacgtcatc tgggtttttg gctgccaatc gtctgtcact cttgtaatac 2220 catggatcag caacactcat tacagagcgc acgctcgaga tggtgtgttt gactactaca 2280 ctacaggttt ggttagcata tggtaccaga cgaattatgt ggttccaatt ggagcaccca 2340 atacagccta tataatagca ttggcggcag cccagaagaa cttcaccatg aagttgtgta 2400 aggatgctag tgatatccta cagacaggca ctatccaggg agatagggtg gcagatgtga 2460 ttgagagttc tataggggac agtgtgagca gagccctcac ccgagctcta ccggcaccta 2520 ccggccaaga cacacaggtg agcagtcatc gactggacac cggtgaagtt ccagcgcttc 2580 aagctgctga aattggggca tcgtcaaaca ctagtgacga gagtatgatt gaaacacgat 2640 gtgttcttaa ctcacatagc acagcagaaa ccactttaga cagcttcttc agtagagcag 2700 gcttggtagg ggaaatagat ctccctcttg agggcactac caacccaaat ggttatgcta 2760 actgggacat agacataact ggctacgcac agatgcgcag aaaagtggaa ctattcactt 2820 atatgcgttt tgatgcagaa ttcacttttg ttgcgtgtac cccttctggt caggttgttc 2880 cacaattgct ccagtatatg tttgttcccc ctggtgctcc caaaccggat tccagggaat 2940 cactcgcttg gcagactgct acgaacccct cagtttttgt caagttgant gatcctccag 3000 cacaggtctc cgttccgttt atgtcacctg cgagtgctta ccagtggttt tacgacgggt 3060 accccacgtt tggagaacac aaacaggaga aagatcttga gtatggagca tgccctaata 3120 acatgatggg tacgttctca gtgcggactg taggcacctc gaagtccaag tacccattgg 3180 tgatcaggat ttacatgagg atgaagcacg tcagggngtg tcaancnccc ccnattncaa 3240 accagaacta tctattcaaa gccaacccaa attatgctgg taattctatt aaaccaactg 3300 gtgccagtcg cacagcaatt accactctcg ggaaatttgg acagcagtcc ggagctatct 3360 acgtgggcaa ctttagagtg gttaaccgcc atcttgctac tcataatgac tgggcaaacc 3420 ttgtttggga agacagctcc cgcgacttgc tcgtatcatc taccactgct caaggttgtg 3480 acacgattgc tcgttgcaat tgccagacag gagtgtatta ttgtaactca atgagaaaac 3540 actatccggt cagtttctcg aaacccagtt tgatcttcgt ggaggccagc gagtattatc 3600 cagctagata ccagtcacat ctcatgcttg cagtgggtca ttcggaacca ggggattgcg 3660 gtggcattct tagatgccaa catggcgtcg tagggatagt ttccaccggg ggaaacggcc 3720 tggtggggtt cgccgatgtg agggatcttc tgtggttgga tgatgaagcc atggagcagg 3780 gcgtgtctga ttacattaaa gggcttggag atgcttttgg catggggttt acaggcgcag 3840 tgtcaagaga agttgaagca ctgaaaagtt acttgaccgg ctcagagggt gccgtggaga 3900 agattctaaa gaacttagtt aaactcatct ctgcgctcgt catcgtcatc aggagtgatt 3960 atgacatggt cacattgacg gcaacacttg ccctgatcgg gtgccacggg agcccttggg 4020 cctgggttaa gtcgaagaca gcatcaattt tgggcatacc gatggctcag aagcagagtg 4080 cctcttggtt aaagaagttc aacgatgcgg cgaatgccgc gaaggggctt gagtggatct 4140 ccaacaaaat cagtaaattt atcgattggc tcaaggagaa aatcgtaccg gctgctaaag 4200 agaaagtcga gtttctaaac aatctaaagc aactcccctt attggagaac caaatttcta 4260 atctcgaaca gtcagcagct tcgcaggagg accttgaggc gatgtttggc aatctttctt 4320 atctggccca cttctgccgc aaattccaac ccctctatgc cacggaagca aagagggtgt 4380 acgccctaga aaagagaatg aataattaca tgcagttcaa gagcaaacac cgtattgaac 4440 ctgtatgcct aatcatcaga ggctcgcctg gtactgggaa gtccttggca acagggatta 4500 ttgctagagc catagcagac aagtaccact ccagtgtgta ttcacttacc tcagacccag 4560 accactttga cggataccaa caacagatcg tcactgctat ggacgaccta tgccagaatc 4620 cagacggcaa agacatgtca ttattttgtc aaatggtgtc tacagtggat atcatgccac 4680 ctatggcatc tcttgaagag aagggagtct cattcgcctc aaagtttgtg attgcatcct 4740 ctaccgccag taccatcata gtgccaacag tctcggattc agatgccatc cgtcgcaggt 4800 tctatatgga ctgcgacatt gaggggaccg attcctataa gacagagctg ggcagacttg 4860 atgcagggag agcagtcaga ctgtgctctg aagacagcac tgcaaacttt aaacggtgca 4920 gtccattagt ctgtgggaaa gcaatccagc ttagggatag caagtccaag gtgagataca 4980 gtgtgcacac ggtagtgagt gaccttatca gggagtatat caacagatca gttattggga 5040 acaccattga agctcttttc caaggacccc ctaaatttag accaataagg attagcttag 5100 aggagaagct cgctcctgat gctattagtg ccttattagc tagtgttgat agtgaagagg 5160 tccgccaata ctgtagagtt cagggatgga ttgtagctga ttctcccacc aacgttgagc 5220 gacacttcaa cagagtggtg ctagtcatgc aatccatcgc tactgtggtt gcagttgtct 5280 cactggtgta tgttatttat aagctgttcg ccgcgtttca aggagcatat tccggcgccc 5340 acaagcaaac actcaagaaa ccagtgctgc gcacggcaac tgtgcagggg ccgagcttgg 5400 acttcgctct atctctactt aggaggaaca ttagtcaggg ccaaaccgac cagtgccact 5460 ttacaatgtt aggagtcaga gaccgcttgt ctgtgctccg cagacactcc caaccaggaa 5520 agaccatctg ggttgaacac aaattagtga agatcgtaga tgctgctgag ttagtagacg 5580 aacaaggggt taacttagag ctcacactgg taacgcttga tactaacgaa acatttagag 5640 catccaccag attcatacca gaaacaatta gggctgctag tgatgcacct ttaggtataa 5700 atactgaaca tatgcccagt atggttgagn cagttggaga tgtcgctcag tatgggtttt 5760 tggaccatag gggtaaggcc actcacagga ctatgatgta caatttcgct accaaagcta 5820 gtcagtgtgg tggtgttgtc gctgccgtag gtaaagtgat tggcatccac attggtggca 5880 acggtaggca aggtttctgt gctgccctga agaggggata cttctgcagt gaacaaggtg 5940 agatccaatg gatgaagtcc atcaaagaaa ctggcaggtt gaacatcagc ggacctactc 6000 gcactaagct tgagccaagt gtctttcacg atgtgttcga aggcactaaa gagccagcag 6060 tgctgactag taaagaccca aggctggaag ttgattttga acaggctctt ttttcaaaat 6120 acgtggggaa cacgcttcat gaacccgacg agtttgtcaa ggagcggcct ttacattant 6180 ccaaccaact caagcagtta gatatcaaga ccaccaagat gagcatggag gatgcatgtt 6240 acggcacaga gaacctggaa gctatagatc ttcacacaag tgcaggatat ccatacagtg 6300 cactaggcat caagaaaaag gacattttgg atccaacaac tcgcgatgtc agcaagatga 6360 aattctacat ggacaagtat gggttggatc taccgtactc tacttatgtt aaagatgaac 6420 ttagggccat cgacaagatc aagaaaggga agtctcgtct catagaagcg agcagtctaa 6480 atgactcaat gtacttgaga atgacatttg ggcaccttta tgaagctttc cacgccaatc 6540 caggtacaat cactggttca gctgttgggt gcaacccaga tgtgttctgg agcaagttac 6600 caattctact tccaggatcg cttttcgcgt ttgactactc ggggtatgac gctagtctca 6660 gcccagtgtg gttcagggcg ctggagatag tcctgcggga aattggatac tccgaagacg 6720 cagtgtgtct catagaaggg atcaatcaca cccatcatgt gtaccgaatt aaaacttatt 6780 gtgttcttgg ggttatgccc tcaggttgct caggcacctc cattttcaac tcgttgttca 6840 acaatttctt tattagaaca ctcctgatta aaacattcaa agggatagat ctagatgaac 6900 tgaacatggt ggcctacggg gatgatgtgt tggctagtta ccccttccca attgactgtc 6960 tggagttggc aagaacaggc aaggagtatg gtctaactat gacccctgcc gacaagtcac 7020 cctgctttaa tgaggttacg tgggagaatg ccactttctt gaagagagga ttcttgcctg 7080 attatcaatt cccgtttctc atccacccta cgatgccaat gagggagatt cacgaatcca 7140 ttcgttggac caaagatgca cgaagtactc aagatcacgt gcgctccctc tgcttattag 7200 catggcacaa cgggaaagag gagtatgaaa aatttgtgag tgcaatcaga tcagttccaa 7260 ttggaaaagc attggctata ccaaattatg agaatctgag gagaaattgg ctcgaattgt 7320 tttaaatcca cagttgtatg ttgaacccca cccgtaatct ggtcgtgtta atgactggtg 7380 ggggtaaatt tgttataacc agaatagcaa aaaaaaaaaa aaaaaaaaaa aaaaaa 7436 //