ID   AF116190; SV 1; linear; mRNA; STD; VRL; 1542 BP.
XX
AC   AF116190;
XX
DT   02-JAN-2000 (Rel. 62, Created)
DT   24-NOV-2000 (Rel. 65, Last updated, Version 3)
XX
DE   Raspberry ringspot virus strain Shepherd putative coat protein mRNA,
DE   partial cds.
XX
KW   .
XX
OS   Raspberry ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-1542
RX   DOI; 10.1016/S0168-1702(00)00158-1.
RX   PUBMED; 10958983.
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68(2):119-126(2000).
XX
RN   [2]
RP   1-1542
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (23-DEC-1998) to the INSDC.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL   Long Hall, Clemson, SC 29634-0377, USA
XX
DR   MD5; c02cd41aa38155241fc7f03fd03d3be5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1542
FT                   /organism="Raspberry ringspot virus"
FT                   /strain="Shepherd"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:12809"
FT   CDS             <1..>1542
FT                   /codon_start=1
FT                   /product="putative coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9QAG9"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9QAG9"
FT                   /protein_id="AAF21985.1"
FT                   /translation="AYEVDPLHLLYYESVDVPKDTLAGTLLTRIDVRAKAATFDSAVWR
FT                   QWVRDGCLKPKIKVRITAATSCFSGIVLGACFDAYRRIPAATTKGITASLVTGLPNTVW
FT                   ATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRSNEITAVADWSIYVSFHVE
FT                   WTQESMLATLIPTFVWPPKPTDISLFKEVWGPYRFTLDGTEAKRSFAIMPGTAIPHGQQ
FT                   IVRTFPRVVAAHFRSWTGKVRMSIQEVSSIFLTGTYMVGVSWNATADLADIVTRKHWIV
FT                   KSNEIFEVDLYCPYGENPTFTGQANGKPFIIVHKLGGIVGPKDSVGTFGFMIHIHGLTG
FT                   VYRNPTLHSGDRSVGSAWFRINNIADDNLVFNIPGRIEDIIAATGKYDVTNYVNPTSLL
FT                   FSVTGLHGGIIRLHITWCPNTNLGESKGTLNYMQYLYHTATENFFGDQATRGIIDQDGF
FT                   TVDIACGDFFGATKIGLPGEIERLGIYSSNAKSIAEIRVSFEVLSMNFYGSTIKVT"
XX
SQ   Sequence 1542 BP; 393 A; 324 C; 370 G; 455 T; 0 other;
     gcctatgagg tagatccatt acacttgttg tattatgaat ctgttgatgt gccaaaggat        60
     actcttgctg gtaccctgtt gactcggatt gacgttcgag caaaggctgc aacttttgat       120
     agtgctgtat ggcgacaatg ggttagagat ggttgtctca aacccaaaat caaggtacgc       180
     atcactgcag ccacatcgtg tttctccggt attgtactgg gtgcatgttt tgatgcatac       240
     cggagaatcc cagcagctac aacaaagggt atcaccgcat cccttgtgac aggcttgccc       300
     aataccgtct gggcaacgcg tgacacctca gaggtcgaat gggatatcga tctcgcggca       360
     gtgtgtggac atactttctt tgcgttagaa gacacctttg gatacatgga ttttttgatc       420
     tatgtactca gaagtaatga aatcaccgct gttgctgatt ggtcaatata tgtttccttt       480
     catgttgaat ggacacagga aagtatgttg gccacactta tccctacttt tgtatggccc       540
     ccaaagccga ccgatatatc tctttttaaa gaagtgtggg ggccataccg ttttacgctg       600
     gatggtaccg aggccaaacg aagttttgct ataatgcccg gtacagctat tccccatggg       660
     cagcagattg tgcgcacatt cccccgagtc gttgccgcac acttccgatc atggactgga       720
     aaggtcagga tgtccattca agaagtttct tctattttcc tgaccggaac atatatggtt       780
     ggtgtgtcct ggaatgccac tgcggatctt gccgacattg tcactcggaa acattggatt       840
     gtaaagtcca atgagatttt tgaagtggac ctatattgtc catatggtga gaatcccacc       900
     tttacgggcc aggctaatgg aaagccattc attatagtgc acaaacttgg tggaattgtt       960
     gggcccaagg actcagttgg gacgtttggt tttatgatac acatacatgg cttgactggt      1020
     gtatatagga acccaacgtt acatagtggt gatcgctctg tggggagtgc ctggttccgc      1080
     attaataaca ttgccgatga caatctggtg tttaatatac caggtagaat cgaagacatc      1140
     attgcggcca ctgggaagta tgatgtcaca aattatgtca atcctactag cttgctgttt      1200
     tcagtaaccg gattgcatgg tggtattata cgtctccata ttacgtggtg cccaaatacc      1260
     aatcttggtg agtcaaaggg tactttgaat tatatgcaat atctgtacca tacagccact      1320
     gaaaatttct ttggcgacca agcaacacgt ggaatcattg accaggatgg tttcacagtt      1380
     gatattgctt gtggtgattt ctttggcgct acaaaaattg gtttgcccgg ggaaattgaa      1440
     agactcggca tttacagttc gaatgccaag tccattgctg aaattagggt ttcttttgaa      1500
     gtgctatcca tgaatttcta cggtagcacc atcaaagtga cg                         1542
//