ID   AF116189; SV 1; linear; mRNA; STD; VRL; 1542 BP.
XX
AC   AF116189;
XX
DT   02-JAN-2000 (Rel. 62, Created)
DT   24-NOV-2000 (Rel. 65, Last updated, Version 3)
XX
DE   Raspberry ringspot virus strain ORR putative coat protein mRNA, partial
DE   cds.
XX
KW   .
XX
OS   Raspberry ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-1542
RX   DOI; 10.1016/S0168-1702(00)00158-1.
RX   PUBMED; 10958983.
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   "Differences between the coat protein amino acid sequences of English and
RT   Scottish serotypes of Raspberry ringspot virus exposed on the surface of
RT   virus particles";
RL   Virus Res. 68(2):119-126(2000).
XX
RN   [2]
RP   1-1542
RA   Scott S.W., Zimmerman M.T., Jones A.T., Le Gall O.;
RT   ;
RL   Submitted (23-DEC-1998) to the INSDC.
RL   Plant Pathology and Physiology, Clemson University, P.O. Box 340377, 120
RL   Long Hall, Clemson, SC 29634-0377, USA
XX
DR   MD5; d28eefd0d5e86ea1965cf73fb9ee3e20.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1542
FT                   /organism="Raspberry ringspot virus"
FT                   /strain="ORR"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:12809"
FT   CDS             <1..>1542
FT                   /codon_start=1
FT                   /product="putative coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:Q9QAH0"
FT                   /db_xref="InterPro:IPR005054"
FT                   /db_xref="InterPro:IPR005305"
FT                   /db_xref="InterPro:IPR005306"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q9QAH0"
FT                   /protein_id="AAF21984.1"
FT                   /translation="AYEVDPLHLLYYESVDVPKDTLAGTLLTRIDVRAKAATFDSAVWR
FT                   QWVRDGCLKPKIKVRITAATSCFSGIVLGACFDAYRRIPAATTKGITASLVTGLPNTVW
FT                   ATRDTSEVEWDIDLAAVCGHTFFALEDTFGYMDFLIYVLRGNEITAVADWSIYVSFHVD
FT                   WTQESMLATLIRTFVWPPKPTDISVFKEVWGPYHFTLDGTEAKESFVIMPGTAIPHGQQ
FT                   IVRTFPRVVAAHFRSWTGKVKMSIQEVSSIFLTGTYMVGVSWNATADLADIVTRKHWIV
FT                   KSNEIFEVDLYCPYGENPTFTGQANGKPFIIVHKLGGIVGPKDSVGTFGFMIHIHGLTG
FT                   VYRNPTLHSGDRSVGSAWFRINNIADDNLVFNIPGRIEDIIAAAGEVDVTNYVNPTSLL
FT                   FSVTGLHGGIIRLHITWCPNTNLGESKGTLKYMQYLYHTATENFFGDQATCGIIDQDGF
FT                   TVDIACGDFFGATRVGLPGEVERLGIYSSNAKSIAEIRVSFEVLSMNLYGSTIKVT"
XX
SQ   Sequence 1542 BP; 388 A; 311 C; 381 G; 462 T; 0 other;
     gcctatgagg tagatccatt acacttgttg tattatgaat ctgttgatgt gccaaaggat        60
     actcttgctg gtaccttgtt gactcggatt gacgttcgag caaaggctgc aacttttgat       120
     agtgctgtat ggcgacaatg ggttagagat ggttgtctca aacccaaaat caaggtacgc       180
     atcactgcag ccacatcgtg tttctccggt attgtactgg gtgcatgttt tgatgcatac       240
     cggagaattc cagcagctac aacaaagggt atcaccgcat cccttgtgac aggcttgccc       300
     aataccgtct gggcaacgcg tgacacctca gaggtcgaat gggatatcga tctcgcggca       360
     gtgtgtggac atactttctt tgcgttagaa gacaccttcg gatacatgga ttttctgatc       420
     tatgtactca gaggtaatga aatcaccgct gttgctgatt ggtcaatata tgtttccttt       480
     catgttgatt ggacacagga aagtatgttg gccacactta tccgtacttt tgtatggccc       540
     ccaaagccga ctgatatatc tgtttttaag gaagtgtggg ggccatacca ttttacgctg       600
     gatggtaccg aggccaaaga aagttttgtt ataatgcctg gtacagctat tccccatggg       660
     cagcagattg tgcgcacatt tccccgagtc gttgccgcac acttccgatc atggactgga       720
     aaggtcaaga tgtccattca agaagtttct tctattttcc tgactggaac atatatggtt       780
     ggtgtgtcct ggaacgctac tgcggatctt gccgatattg tcactcggaa acattggatt       840
     gtaaagtcca atgagatttt tgaagtggac ctatattgtc catatggtga gaatcccacc       900
     tttacgggcc aggctaatgg aaagccattc attatagtgc acaaacttgg tggaattgtt       960
     gggcccaagg actcagttgg gacgtttggt tttatgatac acatacatgg cttgactggt      1020
     gtatatagga acccaacgtt acatagtgga gatcgttctg tggggagtgc ctggttccgc      1080
     atcaataaca ttgccgatga taatctggtg tttaacatac caggtagaat cgaagatatc      1140
     attgcggctg ctggggaagt agatgtcaca aattatgtca atcctactag cttactgttt      1200
     tcagtaaccg gattgcatgg tggtattata cgtctccata ttacgtggtg cccaaatacc      1260
     aatcttggtg agtcaaaggg tactttgaag tatatgcaat atctgtacca tacggccact      1320
     gagaatttct ttggcgacca agcaacatgt gggatcattg accaggatgg tttcacagtt      1380
     gatattgctt gtggtgattt ctttggcgct acgagagttg gtttgcccgg ggaagttgaa      1440
     agactcggca tttacagttc gaatgccaag tccattgctg aaattagggt ttcttttgaa      1500
     gtgctatcca tgaatttata cggtagcacc atcaaagtga cg                         1542
//