ID AF113832; SV 1; circular; genomic DNA; STD; VRL; 8005 BP. XX AC AF113832; XX DT 14-MAY-1999 (Rel. 59, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 4) XX DE Rice tungro bacilliform virus strain RTBV-Ic, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8005 RX PUBMED; 10466823. RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H., RA Koganezawa H., Azzam O.; RT "Sequence changes in six variants of rice tungro bacilliform virus and RT their phylogenetic relationships"; RL J. Gen. Virol. 80(Pt 8):2229-2237(1999). XX RN [2] RP 1-8005 RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H., RA Koganezawa H., Azzam O.; RT ; RL Submitted (16-DEC-1998) to the INSDC. RL Entomology and Plant Pathology, International Rice Research Institute, RL P.O.Box 933, Manila, Luzon 1099, Philippines XX DR MD5; 67a5b615c42de59398ae3099a158e9bb. XX FH Key Location/Qualifiers FH FT source 1..8005 FT /organism="Rice tungro bacilliform virus" FT /strain="RTBV-Ic" FT /mol_type="genomic DNA" FT /db_xref="taxon:10654" FT CDS join(<67..89,93..666) FT /codon_start=1 FT /product="P24" FT /note="ORF1; translation start site unknown" FT /db_xref="UniProtKB/TrEMBL:Q9WQX8" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAD30196.1" FT /translation="VPKRNLISNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYCY FT FDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKPT FT KKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVEL FT RTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST" FT CDS 663..995 FT /codon_start=1 FT /product="P12" FT /note="ORF2" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q9WQX7" FT /protein_id="AAD30197.1" FT /translation="MSADYPTFKEALEKFKNLESDTASKDKFNWVFTLENIKTTADVNL FT ASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 992..6025 FT /codon_start=1 FT /product="polyprotein P194" FT /note="ORF3" FT /db_xref="GOA:Q9WQX6" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q9WQX6" FT /protein_id="AAD30198.1" FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR FT FSNYKQTRMHDPIENNSDEDENLKILGEQLNIKMARFYTMQTPEEELLEVIQQLEREKQ FT AMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE FT TEEITEWENPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPVEASKDRNFERI FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWIAKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKRVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKICET FT QYCKTCADQLAIDVREIKKPTKEESMIEDLKLNVKNLEFRVTILEHKAEMQNLQDKFET FT MQIRNKPEITEISEATTSLAMRANESKYIKTSINKTAGCYVETKISFNNENRIITALID FT SGSTHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIK FT YKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFAR FT KHGGRPPLFSNIPETYNKIPHLHSYQPQPILSYKNEIGNQSLITMVKELEALGFIGDDI FT TKNRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT FT AAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKA FT GFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFTLLYID FT DILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPH FT IVDKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKED FT WNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGY FT ASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK FT TRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSE FT SIPLYNDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT CDS 6046..7215 FT /codon_start=1 FT /product="P46" FT /note="ORF4" FT /db_xref="GOA:Q9WQX5" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:Q9WQX5" FT /protein_id="AAD30199.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYRNEWISLSDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGKDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED FT EGEVVYISKNTKIIKVTREHVWAWPEHDGDTMSCTTSIEDEWIHRMENA" XX SQ Sequence 8005 BP; 3270 A; 1241 C; 1444 G; 2050 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaatagaat acaatctagt caaactaatt 60 acataagttc cgaagaggaa tcttatttct taaaacattg agtcacgata cgaaaaactt 120 gaattcttag acttagcagt ctggggaaaa gagaaaaaac aaaaatattt actatctacc 180 gataatatta gcttttattg ttactttgat actagtaaaa ctagtgaatc agaaagaaag 240 catacctttc attctgataa taagcaactt aatagtattg tagatcttat tattaagcat 300 tctgaaaaaa ccaaaaatat taaggaagaa ttagaaaaat atagtcagtt cctagataag 360 atattagatt taaaacctac taaaaaacaa gtcgaaaaac tattagaaaa tcaaaactta 420 attagcaaga actttgatta tatcaaagaa caaaacactc agctagaaaa atcactaaga 480 aaaacagtta agttagaaga ctccattaat actttattag tagaaataca acaagctaga 540 cctaaggaag tagaattaag gactcttaaa atagcagagc agaactctaa ggcaatagaa 600 aaatttgaac aagaaattaa ggatctaaga gaaatcttag aataccttaa gcaccaatct 660 acatgagcgc tgattatcca actttcaagg aagcccttga aaaatttaaa aacctagaat 720 cagatacagc ttctaaagat aagtttaatt gggtatttac tttagaaaat ataaaaacaa 780 ctgcagacgt aaacctagca tctaaaggat tagtacaact ttacgcccta caagaaattg 840 ataaaaagat aaataatctt acagcccaag taagtaagtt acctacaact agtggaagta 900 gttcagcagg agccatagta cctgcaggaa gtaacactca aggtcaatat aaagcaccac 960 ctaaaaaagg aattaaaaga aaatatccag catgagtctt agaccattta cgggcacttc 1020 tagaactata actcaagatt caacttctga atctaatata aaaaagggaa aaaattcaac 1080 aaaaagagaa ttaatagaag aagtagatgt taatcaggaa gtagaaaact ttgattggaa 1140 aaaattatca ggtattaaac ctaataaatt atatgagaaa aactggcaag aaaaggttaa 1200 gttaaagcaa caatctatag tttcagcata taaagaggaa gctattagcg taactcataa 1260 tgcatatact actactttat ttccacaaga agtaattaag aatgttaaaa atcagggaaa 1320 actttattat catataggca tgatggccat aggagttaaa ggacttcata gaagaaaaat 1380 aggaactaaa gttatgataa tgttctatga tgatagtttc ggtaaagcta gagaagctag 1440 cataggatca atagaaatgg atatgaacgc cggttgcgga gtattttact cctgccccga 1500 ctttgcaaaa tacattaaag atttatcaca tcttaagata gggatacaaa ccctaggata 1560 tgaaaactat gaaggaaaaa acctttcagt agcaatcaaa actataggaa gattaaccac 1620 taatatacaa tcaaaatata agataaatgt gaaagatatt gtggaacaaa tatcatcaca 1680 aggaatcatt atggtagcac ccatggaaat agattcatca cacttagatg gaaatgaatg 1740 ggatctaagt aaattcctaa accatgaaaa cacaagtaga gtcccaacca aagccttaat 1800 atatcagaat ctacaaggag gagaatcctt aagattctca aactataagc aaactagaat 1860 gcatgatcct attgagaata attcagatga ggatgaaaat ttaaaaatct taggagaaca 1920 attaaacatt aaaatggcaa gattttacac aatgcaaacc ccagaggaag aattactaga 1980 agtaattcaa caattagaaa gagaaaaaca agccatgata gaaaaactag aagccaaaat 2040 gaaagaatca tccaaaatgg cgatagtaga agataatttc aacccaaaca atgaatatct 2100 agaagataca tattccgaat atgaagacct agaatttgaa aaattaggac taactggatg 2160 ggaagactta gaccaggatt ccatagaaac cgaagaaata accgaatggg aaaatcctaa 2220 tcaggtactt catagagaaa ttagagcata caaatcagtc tctgaacaaa tagaagatat 2280 atttggggaa ttactaaaag aacatggaaa ctatgatatg gcccttaaaa acttagaaga 2340 aaaatatgac ctagacaaaa tagaaaaggc caaatctata gaagaaatag ccaaatcatc 2400 tacatcgtca gaaattaggc caactaaacg acctaaagaa gaacaaacag cctatgaaga 2460 tgatatgaga gatgactgga aaagaaagga gttaacagta aatcctgtag aagcctcaaa 2520 ggatagaaac tttgaaagaa taggatcatc ctataagaag aacttttacc ctagtcgaag 2580 tgaaatatta aacctagata atgttccccc acaattttat tacgaccaat tagtaacatg 2640 ggaaggaata gttaaaaatg aatgggaagc acgaaagaaa gacggcatgg atatgtggtc 2700 ttggatggat ggaagaataa caggattagt cctatactta gtccaagatt ggatagctaa 2760 aaatcaagcc gcctacaatg atataaaatc tagaggtgat agacctgaaa acttcgtaaa 2820 aatggtaaaa gataggttct taatagaaga tcctacagat gaaagaagaa ctgcattaca 2880 aaggttagca caaagagaat tagaagcctt aaactgcgaa gatcctacga aaattcaacc 2940 atttatggct gaatatctta agaaagcctc agaagccaaa aaaggattcg atgtagttta 3000 tgtagaaaga ctctttgata gactaccaga agcagtagga aaggtagtaa aggctgactt 3060 tgtcaaagat ggtaattcct atgaagcagg aataggaata gcagtttcat acatatctac 3120 atggatgaga gcaaaatgca ttaaggaaac agaagctaaa acccaaaaga aagcatcttt 3180 agcattctgc agatccatat atactatagg agactataag aaacgaaaaa tcctaaaaag 3240 agttacaaat tataataaaa ataggagaaa gaactacgtc agaagaccta gtattaagaa 3300 aaaatgtaga tgttatatct gtcaagatga gaatcaccta gccaatagat gtcctagaag 3360 atataccaat caggctagag caagtctaat agatggatta gatgaagata tagtatcaat 3420 agcatcagac gatgaagata tcgaaaattt ccttgaaata atagaacttg atgagtttat 3480 agcacattct agtcaggaac acgaacatac atgggaaatt ggaggaaaga aagataaggt 3540 atgtgaaata tgcagttatt ttacagacta taataaaact gttagttgta aaatttgtga 3600 aacccaatac tgcaaaacat gtgctgatca actcgcaata gacgtaagag aaattaaaaa 3660 acctaccaaa gaagaatcaa tgatagaaga tttaaaatta aatgtcaaaa atctagaatt 3720 tagagtcacc attctagaac ataaagcaga aatgcaaaat cttcaagaca aatttgaaac 3780 tatgcaaatt agaaataaac cagaaataac agaaatatca gaagcaacaa cttcattagc 3840 tatgcgagca aatgaatcaa agtatataaa aacatcaatt aataaaactg caggatgtta 3900 tgtagaaaca aaaatctcat ttaataatga gaatcgaatc ataacagcat taatagattc 3960 aggttcaaca cataacataa tctgtccaac attaatacca gcatcatgga ttaataatac 4020 acatagagaa attattatgt ttgctgtgga taatagcaaa tataatctga atcaagaatt 4080 aatagacgat atcaaattac aatttcaaga agttgatgaa acttttggaa taaaatataa 4140 attaggacaa acttatgtag cacctaaacc aacaaaaaca ttcataatag gacatagatt 4200 ccttacaaat gaaaatggta gtgttacaat tcataaagac tatataacta tacagaaaac 4260 tactggcata tacccaacag ctagacatga acttaaatca gagtttgcgc gaaagcatgg 4320 tggacgaccg ccattatttt caaacattcc tgaaacttat aacaaaattc ctcatttgca 4380 ttcatatcag cctcaaccta tattaagtta taagaatgaa ataggaaatc agagtttaat 4440 tactatggtt aaggagttag aagcacttgg atttatcgga gatgatatta ctaaaaatag 4500 gacaacatgg gtatgtgact ttaaaatcat aaacccagac attaatataa cttgtgcaac 4560 aattccatat acaccagcag ataaagaagt atttgaaaaa caaattaaag aattattaga 4620 taataagtta attaagaaag ctgatccaac atgtaggcat agaacagcag catttatagt 4680 aagaaatcat tctgaagaag tagctcagaa acctcgaata gtttataact ataaacgctt 4740 gaatgataat atgcatacag atccttttaa tattcctcat aagatttcaa tgattaatct 4800 gatacagaaa gctaatatat tttctaagtt tgatctgaaa gcaggatttc atcatatgaa 4860 actaaaagat gatttcaaag attggactac ttttacatgc tcagaaggat tatatacttg 4920 gaacgtctgt ccttttggta tagccaatgc tccatgtgca tttcaaagat tcatgcaaga 4980 gtcatttgga gatttaaagt ttacattatt atacatagat gacatactta ttgcatctaa 5040 caatgaaaaa gagcatatag aacatcttaa gattttcttt aatagagtaa aagagatagg 5100 atgtgttctt agtaagaaaa aatcaaaaat gtttctaaaa gaagtagaat atcttggagt 5160 agaaattaaa gaaggaaaga ttagccttca gccacatata gttgataaaa ttaaaaaatt 5220 tgataagaat aagctcaata ctttaaaagg actacaagca tatctaggat tactcaatta 5280 tgccagagga tatatcaaag acctatcaaa gttagtagga ccactttaca aaaagacagg 5340 aaagaatggg caaagaatct ttaacaaaga agattggaat ataatcttta aaatagaaag 5400 agaggtatca aagataaagc ctttagaaag acctaaagaa accgactaca tcattataga 5460 aacagatgct tcagaagaag gctggggagc agtcttagtc tgtaagccag ataaatatag 5520 tggcaaagac actgaaaaaa tagcaggcta tgcatcagga aactttggag aaaagaaaac 5580 ctggactagt ttagattatg aaatagaagc cataaatgaa gccctaaaca agttccagat 5640 atacttagac aaagatttta caatcagaac tgattgtgaa gcaatagtga aaggaataaa 5700 aacagaagac tataagaaga gatcaaagac cagatggatc aagttaagag ataatctctt 5760 aaaagatggt tacaagccta cctttgagca tatcaagggt aacaaaaatt ttttaccaaa 5820 cttcttatcc cgtgagggag attttatttt aaaatgtctt caaaatcccg attctacgga 5880 atcatattct atagattcgt cagaatcaat tccactatat aacgattcga aagaatcaca 5940 ttctatagag tctgatgact caattccact atacagggac aagcttcttc ctctagtcga 6000 aaggctaaag gagaaaagtg cctaactaag atcggaggca tcaccatgaa tatagagtac 6060 ccgtactcaa tccacataat agacaagaac aaggttccga tctacgatca aggaaatctc 6120 ttccacactg agaagtctgc gagactttca catgtgtcca gaggtttgct ggatcatctc 6180 tttacttttt cgtctgataa tactgagcga gttaggaagc tccacatatt agccgattat 6240 ctttacctac tagaaagtga gagagagtca tatagaaatg agtggattag cctgagtgat 6300 caggttagtc tcctacaaaa acaaaatagt gagttgagag ctaggatagc cactaataaa 6360 gagataatag agggactgag agagccagtc aaaaagccaa tatacacaac ccaggataaa 6420 gagaggctcc gcgtcttctt ttgcgaagaa agaagcatgg aatatatata ctatcatata 6480 aaaaggctag ctcagcagag ctattattcc cacctaaata agttacagaa ggattgcgag 6540 ccctttcgag gggtctacat gtctttctta actaatgtta aatttctagt attatgtgaa 6600 gccggatact ggactgtacc agatatagaa actaatacca cagagtcttt attaagtcta 6660 tctcagaaga aaggaaaaga tcttctgcaa aagggagtgg taatatttaa tgagcttgaa 6720 ggaggatatc aactttctcc aaggttcatt ggagaccttt atgctcatgg ttttattaaa 6780 caaataaact tcacgaccaa ggttcctgaa ggattgccgc caatcatagc ggaaaaactt 6840 caagactata agttccctgg atcaaacaca gtcttaatag aacgagagat tcctcgctgg 6900 aactttaatg aaatgaaaag agagacacag atgaggacca atttatatat cttcaagaat 6960 tatcgatgct tctatggcta ttcaccatta aggccatatg aacctataac tcctgaagaa 7020 tttgggtttg attactacag ttgggaaaat atggttgatg aagacgaagg agaagtagta 7080 tacatctcca aaaatactaa gattattaaa gtcactagag agcatgtatg ggcttggcca 7140 gaacatgatg gagatacaat gtcctgcacc acatcaatag aagacgaatg gatccaccgt 7200 atggaaaatg cttaaagaag ctttatcaaa agcaacttta agtacgaatc aataaagaag 7260 gaccagaaga tataaagcgg gaacatcttc acatgctacc acatggctag catctttact 7320 ttagcatctc tattattgta agagtgtgta atgaccagtg tgcccctgga ctccagtata 7380 taaggagcac cagagtattg taatagatca tcgatcaagc aagcgagagc taaaacttct 7440 aagagagcaa gagaggagct tatcctctca acccctcttc aagaagcaaa ggcgatcaat 7500 ggctcaggtc agtgagtagt cgtctttaag gttcctctag gaacctctgt gtaatatgtt 7560 tgtacttatc attgtatttc tcaaaaccta tccgctgcat gaataaagct cttatattca 7620 tcctacaccc ttgtgataaa acatgaagtc atactcgttc taagattaag tgttctaaaa 7680 atacttcgaa gcattgaaaa gggggctaaa gggggaaaaa gtaccgtcag gccgtgttat 7740 ggcaagggaa gaagtaccat gaatacccta taaatgttag aaggaagata agaactaagt 7800 atcttatgaa caatgagtag ctgatttctg atattcattg acaagtatcg ttataatcca 7860 taagctttga aagatctgct agtgtggata ccaaaaggct gtcgtggttc gcccagtcga 7920 cggatgaggt tataaacgaa gcactagtag gtaactaaga ggcttaggga tgagcaacga 7980 gaaaagttag gggggtgcct agaaa 8005 //