ID AF113831; SV 1; circular; genomic DNA; STD; VRL; 8001 BP. XX AC AF113831; XX DT 14-MAY-1999 (Rel. 59, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 4) XX DE Rice tungro bacilliform virus strain RTBV-G2, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8001 RX PUBMED; 10466823. RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H., RA Koganezawa H., Azzam O.; RT "Sequence changes in six variants of rice tungro bacilliform virus and RT their phylogenetic relationships"; RL J. Gen. Virol. 80(Pt 8):2229-2237(1999). XX RN [2] RP 1-8001 RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H., RA Koganezawa H., Azzam O.; RT ; RL Submitted (16-DEC-1998) to the INSDC. RL Entomology and Plant Pathology, International Rice Research Institute, RL P.O.Box 933, Manila, Luzon 1099, Philippines XX DR MD5; 1678a35af6031678d6bf52d2dd96db0a. DR EuropePMC; PMC3104934; 22476479. XX FH Key Location/Qualifiers FH FT source 1..8001 FT /organism="Rice tungro bacilliform virus" FT /strain="RTBV-G2" FT /mol_type="genomic DNA" FT /country="Philippines" FT /note="greenhouse isolate from the International Rice FT Research Institute" FT /db_xref="taxon:10654" FT CDS <69..668 FT /codon_start=1 FT /product="P24" FT /note="ORF1; translation start site unknown" FT /db_xref="UniProtKB/TrEMBL:Q77RM0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAD30192.1" FT /translation="VPKRDLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE FT LRTLKIAEQNSKAIEKFEQEIKDLREILEFLKHQAT" FT CDS 665..997 FT /codon_start=1 FT /product="P12" FT /note="ORF2" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q77RL9" FT /protein_id="AAD30193.1" FT /translation="MSADYPTFKEALEKFKNLESDTAGKDKFNWVFTLENIKSAADVNL FT ASKGLVQLYALQEIDKKINNLTTQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 994..6021 FT /codon_start=1 FT /product="polyprotein P194" FT /note="ORF3" FT /db_xref="GOA:Q9WQY0" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q9WQY0" FT /protein_id="AAD30194.1" FT /translation="MSLRPFTGTSRTITQDLTSESNIKKGKNSTKRELIEEIDVNQEVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKARKASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKALIYQNLQGGESLR FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELREVIQQLEREKQ FT AMIAKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE FT TEEITEWGNPNQVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAKSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPIEASKDRNFERI FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWISKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTQKKASLAFCRSIYTIGDYKKRKILKKVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKTCET FT QYCKTCSDQLALEVTEVKKPTKEETMIDDLKLNVKNLEFRVTILEHKVEMQNLQDKFET FT MQIRNKSEITEIPTTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALIDSG FT STHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIKYK FT LGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFARKH FT GGRPPLFSNIPETYNKIPHLHSYQPQPILGYKNEIGNQSLITMVKELEALGFIGDDITK FT NRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRTAA FT FIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGF FT HHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFALLYIDDI FT LIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIV FT DKIKKFDKNKLNTLKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWN FT IIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYAS FT GNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSKTR FT WIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSESI FT PLYIDSKESHSIESNDSIPLYRDKLLPLVERLKEKSA" FT CDS 6042..7211 FT /codon_start=1 FT /product="P46" FT /note="ORF4" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:Q9WQX9" FT /protein_id="AAD30195.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYKNEWISLKDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGVYMSFLTNVKFLVLCEAGYWTVPDIETNTTESILSLSQKKGEDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED FT EGEVVYISKTTKIIKVTREHAWAWPEHDGDTMSCTTSIEYEWIHRMDNA" XX SQ Sequence 8001 BP; 3266 A; 1249 C; 1448 G; 2038 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaaataga atacaatcta gtcaaactaa 60 ttacataagt tccaaagagg gatcttattt ctcaaaatat tgagtcacgt tacgaaaaac 120 ttgaattctt agacttagca gtctggggaa aagagaaaaa acaaaaatat ttactatcta 180 ccgataatat tagcttttac tgttactttg atactagtaa aaccagtgaa tcagaaagaa 240 agcatacctt tcattctgat aataagcaac tcaatagtat tgtagacctt attattaagc 300 attctgaaaa gaccaaaaat attaaggaag aattagaaaa atatagtcag ttcctagata 360 agatattaga tttaaaacct actaaaaaac aagttgaaaa actattagaa aatcaaaact 420 taattagcaa gaactttgat tatatcaaag aacaaaacac tcaactagaa aaatccctaa 480 gaaaaacagt taagttagaa gactccatta atactctatt agtagaaata caacaagcta 540 gacctaagga agtagaatta agaactctta aaatagcaga acagaactct aaggcaatag 600 aaaaatttga gcaagaaatt aaggacttaa gagaaatcct ggaattcctt aagcatcaag 660 ctacatgagc gctgattacc caactttcaa ggaagccctt gaaaagttta aaaacctaga 720 atcagataca gccggaaaag ataagtttaa ttgggtattt actctagaaa atataaagtc 780 agccgcggac gtaaatttag catctaaggg tttagtacaa ctttacgctt tacaagaaat 840 tgataaaaag attaataatc ttacaaccca agttagtaag ttacctacaa ctagtggaag 900 tagttcagca ggagctatag tacctgcagg tagtaacacc caaggtcagt acaaagcacc 960 acctaagaaa ggaattaaaa gaaaatatcc agcatgagcc ttagaccatt tactggtact 1020 tctagaacta taacccaaga tttaacctct gaatctaata taaaaaaggg aaaaaactca 1080 acaaaaagag aattaataga agaaatagat gttaatcaag aagtagaaaa ctttgattgg 1140 aaaaaactat caggaattaa acctaataaa ctatatgaga aaaattggca agaaaaggtt 1200 aagttaaaac aacaatccat agtctcagca tataaagaag aagctattag tgtaactcat 1260 aatgcatata ctactacttt atttccacaa gaagtaatta aaaatgttaa gaatcaggga 1320 aaactttatt atcatatagg catgatggcc ataggagtta aaggacttca tagaagaaaa 1380 ataggaacta aagtcatgat tatgttttat gatgatagtt tcggtaaagc tagaaaagct 1440 agcattggat caatagaaat ggatatgaac gccggttgtg gagtgttcta ctcctgcccc 1500 gactttgcaa aatatatcaa agatttatca caccttaaga tagggataca aaccctagga 1560 tatgaaaatt atgaaggaaa aaacctttcg gtagcaatca aaactatagg aagattgacc 1620 accaatatac agtcaaagta taagataaat gtgaaagata ttgtagaaca gatatcatca 1680 caaggaatca ttatggtagc acccatggaa atagattcat cacacctaga tgggaatgaa 1740 tgggatctta gtaaattctt aaaccatgaa aacacaagta gagtcccaac caaagcctta 1800 atatatcaga atctacaagg aggggaatcc ttaagatttt caaattataa gcaaactaga 1860 atgcatgatc caactgaaaa taattcagat gaagatgaag atttaaaaat cctaggagaa 1920 caactaaata ttaaaatggc aagattttac acaatgcaaa ccccagaaga agaattacga 1980 gaagtaattc aacaattaga aagagaaaaa caagccatga tagcaaaact agaagctaaa 2040 atgaaagagt catctaaaat ggcaatagta gaagataatt tcaatccaaa taacgaatat 2100 ctagaagata catattctga atatgaagat ctagaattcg agaaattagg attaaccgga 2160 tgggaagact tagatcagga ttccatagaa accgaagaaa taactgaatg gggaaatcct 2220 aatcaagtac ttcatagaga aattagagca tataaatcag tatccgaaca aatagaagat 2280 atattcggag aactactaaa agaacacgga aattatgata tggccctcaa aaacctagaa 2340 gaaaaatacg acctagataa aatagaaaag gccaaatcta tagaagaaat agctaagtca 2400 tctacatcgt cagaaattag gccaactaaa cgacctaaag aagaacaaac agcctatgaa 2460 gatgatatga gagatgattg gaaaagaaaa gaattaacag taaatcccat agaagcctca 2520 aaagatagaa attttgaaag aataggaagt tcatataaga aaaactttta ccctagtaga 2580 agtgaaatat taaacctaga taatgttccc ccacagtttt actatgacca actagtaacc 2640 tgggaaggaa tagttaaaaa tgaatgggaa gcacgtaaga aagatgggat ggatatgtgg 2700 tcttggatgg acggaagaat aacaggatta gtgttatatt tagtccaaga ttggatatct 2760 aaaaatcagg cagcctataa tgatataaaa tctagaggtg atagacctga aaacttcgta 2820 aaaatggtaa aagataggtt cttaatagaa gatcctacag atgaaagaag aacagcatta 2880 caaaggttag cacaaagaga attagaagcc ttaaactgcg aagatcccac taaaattcaa 2940 ccatttatgg ctgaatacct taagaaagcc tcagaagcca aaaaaggatt tgatgtagtt 3000 tatgtagaaa gactctttga tagactacca gaagcagtag gaaaggtagt aaaagcggac 3060 tttgtcaaag acggtaattc ctatgaagca ggaataggaa tagcagtttc atatatatcc 3120 acatggatga gagcaaaatg cattaaggaa acagaagcta aaactcaaaa gaaagcatcc 3180 ttagcattct gtagatccat atatactata ggagattata agaaacgaaa aatcctaaaa 3240 aaagttacaa actataataa aaataggaga aaaaactatg tcagaagacc tagcattaag 3300 aaaaaatgta ggtgttatat ctgtcaagat gaaaatcacc tagctaatag atgtcctaga 3360 cgatatacta atcaggctag agcaagtcta atagatggat tagacgaaga tatagtatcc 3420 atagcatcag atgacgagga tattgaaaat ttccttgaaa taatagaact tgatgaattt 3480 atagcacatt ctagtcaaga acatgaacat acatgggaaa tcggaggaaa gaaagataag 3540 gtatgtgaaa tttgcagtta ttttacggat tataataaaa ctgttagttg taaaacttgt 3600 gaaacccaat attgcaaaac atgttctgat caactagcac tagaagtaac agaagtcaaa 3660 aaacctacaa aagaagaaac aatgatagac gacctaaaat taaatgttaa aaatctagaa 3720 tttagagtca ccattctaga acataaggta gaaatgcaga atcttcaaga taaattcgaa 3780 actatgcaaa ttagaaataa atcagaaata acagaaatac caacaacctc attagctatg 3840 agagcaaatg aatcaaatta tataaaaaca tcaattaata aaactgcagg atgttatgta 3900 gaaacaaaaa tctcatttaa taatgagaat agaatcataa cagcactaat agattcagga 3960 tcaacacata atataatatg tccaacattg ataccagcat catggattaa taatacacat 4020 agagaaatta taatgttcgc tgtagacaat agcaaatata atctgaatca agaattaata 4080 gatgatataa aattacaatt ccaagaagtt gatgaaactt ttggaataaa atataaatta 4140 ggacaaacct atgtagcacc taagccaaca aaaacattta taataggaca cagattcctt 4200 acaaatgaaa atggtagtgt tacaatccat aaagattata taactataca aaaaactacg 4260 ggaatatacc caacagccag acacgaactt aaatcagagt ttgcgcgaaa gcatggtgga 4320 cgcccgccat tattttcaaa cattcctgaa acctataaca aaattcctca tttgcattca 4380 tatcagcctc aaccaatatt aggatataag aatgaaatag gaaatcaaag tttaatcact 4440 atggtgaaag aattagaagc acttggattc ataggagatg acattactaa aaacagaaca 4500 acgtgggtat gtgacttcaa aatcataaac ccagatatta atataacttg tgcaacaatt 4560 ccatacacac cagcagataa agaagtattt gaaaaacaaa ttaaggagct actagataat 4620 aagttaatca agaaagccga tccaacatgt aggcatagaa cagcagcatt tatagtaaga 4680 aatcattctg aagaagtagc tcagaaacct cgaatagtct ataactataa acgattgaat 4740 gataatatgc atacagatcc ttttaatatt cctcataaga tttcaatgat taatctaata 4800 cagaaagcta atatattttc taagtttgat ttaaaagcag gatttcatca tatgaaatta 4860 aaagatgatt tcaaagattg gactactttt acatgctcag aaggattata tacttggaac 4920 gtctgtccat ttggtatagc taacgctcct tgtgcatttc aaagatttat gcaggaatcc 4980 tttggagatt taaagtttgc attattatat atagatgaca tacttattgc atctaataac 5040 gaaaaagagc atatagaaca tcttaagatt ttctttaata gagtaaaaga aataggatgt 5100 gttcttagta agaaaaaatc aaaaatgttt cttaaagaag tagaatatct tggagtagaa 5160 attaaagaag gaaaaattag ccttcagccc catatagttg ataagatcaa aaaattcgat 5220 aagaataaac tcaacacttt aaaaggactg caagcatatt tagggttact caattatgcc 5280 agaggataca tcaaagacct atcaaagcta gtaggaccac tttataaaaa gacaggaaaa 5340 aatgggcaaa gaatctttaa caaagaagat tggaatatca tctttaagat agaaagagag 5400 gtatcaaaga taaagccttt agaaagacct aaagaaaccg actacatcat tatagagaca 5460 gatgcgtcag aagaaggctg gggagcagtc ttagtctgta agccagataa atatagtggc 5520 aaggacactg agaaaatagc aggatatgca tcaggaaact ttggagagaa gaaaacctgg 5580 actagtttag attatgaaat agaagctata aatgaagccc taaacaagtt ccagatatat 5640 ttagataaag attttacaat cagaactgat tgtgaagcaa tagtgaaagg gataaaaaca 5700 gaagattata aaaagagatc aaaaacaagg tggatcaagt taagagataa tctcttaaag 5760 gatggataca agcctacctt tgagcatatc aagggaaaca aaaacttttt accaaacttc 5820 ttatcccgtg agggagattt tattttaaaa tgtcttcaaa accccgattc tacggaatca 5880 tattctatag attcgtcaga atcaattcca ctatatatcg attcgaaaga atcacattct 5940 atagagtcta atgactcaat tccactatac agggacaagc ttcttcctct agtcgaaagg 6000 ctaaaggaaa agagtgccta actaagatcg gaggcatcac catgaatata gagtacccgt 6060 actcaatcca cataatagac aagaacaagg ttccgatcta cgatcaagga aatctcttcc 6120 acactgagaa gtccgcaaga ctttcacatg tgtccagagg tttgctggat catctcttta 6180 ctttttcgtc tgataatact gagcgagtta ggaagctcca catattagcc gattatcttt 6240 acctattaga aagtgagaga gagtcatata aaaatgagtg gattagcttg aaggatcaag 6300 ttagtcttct acaaaaacaa aatagtgagt tgagagctag gatagccacc aacaaagaaa 6360 taatagaagg actgagagag ccagttaaaa agccaatata cacaacccag gataaagaga 6420 ggctccgtgt tttcttttgc gaagaaagaa gcatggaata tatatattat catataaaaa 6480 ggctagctca gcagagctat tattcccacc taaataaatt acagaaggat tgtgaaccct 6540 ttcgaggggt ctacatgtct ttcttaacta atgttaagtt cctagtatta tgtgaagctg 6600 gatactggac tgtaccagat atagaaacta atactacaga gtctatatta agtctatccc 6660 agaagaaagg agaagatctt ctacaaaagg gagtagtaat atttaatgag cttgaaggag 6720 gatatcaact ctctccaagg tttattggag acctttatgc tcatggcttt attaaacaaa 6780 taaacttcac gaccaaggtt cctgaaggac tgccgccaat catagcggaa aaacttcaag 6840 actacaagtt ccctggatca aacaccgtct taatagaacg agagattcct cgctggaatt 6900 ttaatgaaat gaaaagagaa acacagatga ggaccaattt atatatcttc aagaattatc 6960 gttgtttcta tggctattca cctttaaggc catatgaacc tataactcct gaagaattcg 7020 ggtttgatta ctatagttgg gaaaatatgg ttgatgaaga cgaaggagaa gtagtatata 7080 tctccaagac tactaaaatc atcaaagtta ctagagagca tgcatgggcc tggccagaac 7140 atgatggaga tacaatgtcc tgcaccacat caatagaata cgaatggatc catcgtatgg 7200 acaatgctta aagaagcttt atctaaagca actttaagta cgaatcaata aagaaggacc 7260 agaagatata aagcgggaac atcttcacat gctaccacat ggctagcatc tttactttag 7320 catctctatt attgtaagga tgtgtaatga ctagtgtgcc cctggactcc agtatataag 7380 gagcaccaga gtattgtaag agatcatcga tcaagcaagc gagagctcaa acttctaaga 7440 gagcaagaga ggagcttatc ctctcaaccc ctcttcaaga agcaaaggcg atcaatggct 7500 caggtcagtg agtagtcgtc tttaaggttc ctctaggaac ctctgtgtaa tatgtttgta 7560 cttatgattg tatttctcaa aacctatccg ctgcatgaat aaagctctta tatttatcct 7620 acacccttgt gataaaacat gaagtcatac tcgttctaag attaagtgtt ctaaaaatac 7680 ttcgaagcat tgaaaagggg gctaaagggg gaaaaagtac cgtcaggccg tgttatggca 7740 agggaagaag taccatgaat accctataga tgttagaagg aagataagaa ctaagtatct 7800 tatgaacaat gggtagctga tttctgacta tcattaacaa gtatcgttat aatccataag 7860 ctttgaaaga tctgctagtg tggataccaa aaggctgtcg tggttcgccc agtcgacgga 7920 tgaggtcata aacgaagcac tagtaggtaa ctaagaggct tagggatgag caacgagaaa 7980 agttaggggg gtgcctagaa a 8001 //