ID AF113830; SV 1; circular; genomic DNA; STD; VRL; 8006 BP. XX AC AF113830; XX DT 14-MAY-1999 (Rel. 59, Created) DT 03-MAR-2000 (Rel. 62, Last updated, Version 4) XX DE Rice tungro bacilliform virus strain RTBV-G1, complete genome. XX KW . XX OS Rice tungro bacilliform virus OC Viruses; Ortervirales; Caulimoviridae; Tungrovirus. XX RN [1] RP 1-8006 RX PUBMED; 10466823. RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H., RA Koganezawa H., Azzam O.; RT "Sequence changes in six variants of rice tungro bacilliform virus and RT their phylogenetic relationships"; RL J. Gen. Virol. 80(Pt 8):2229-2237(1999). XX RN [2] RP 1-8006 RA Cabauatan P.Q., Melcher U., Ishikawa K., Omura T., Hibino H., RA Koganezawa H., Azzam O.; RT ; RL Submitted (16-DEC-1998) to the INSDC. RL Entomology and Plant Pathology, International Rice Research Institute, RL P.O.Box 933, Manila, Luzon 1099, Philippines XX DR MD5; f8a8060057cdae3500f60d279a46e1e0. XX FH Key Location/Qualifiers FH FT source 1..8006 FT /organism="Rice tungro bacilliform virus" FT /strain="RTBV-G1" FT /mol_type="genomic DNA" FT /country="Philippines" FT /clone="G1-10" FT /note="greenhouse isolate from the International Rice FT Research Institute" FT /db_xref="taxon:10654" FT CDS <68..667 FT /codon_start=1 FT /product="P24" FT /note="ORF1; translation start site unknown" FT /db_xref="UniProtKB/TrEMBL:Q9WQY4" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="AAD30188.1" FT /translation="VPKRNLISQNIESRYEKLEFLDLAVWGKEKKQKYLLSTDNISFYC FT YFDTSKTSESERKHTFHSDNKQLNSIVDLIIKHSEKTKNIKEELEKYSQFLDKILDLKP FT TKKQVEKLLENQNLISKNFDYIKEQNTQLEKSLRKTVKLEDSINTLLVEIQQARPKEVE FT LRTLKIAEQNSKAIEKFEQEIKDLREILEYLKHQST" FT CDS 664..996 FT /codon_start=1 FT /product="P12" FT /note="ORF2" FT /db_xref="InterPro:IPR009417" FT /db_xref="UniProtKB/TrEMBL:Q9WQY3" FT /protein_id="AAD30189.1" FT /translation="MSADYPTFKEALEKFKNLESDTVSKDKFNWVFTLENIKTTADVNL FT ASKGLVQLYALQEIDKKINNLTAQVSKLPTTSGSSSAGAIVPAGSNTQGQYKAPPKKGI FT KRKYPA" FT CDS 993..6026 FT /codon_start=1 FT /product="polyprotein P194" FT /note="ORF3" FT /db_xref="GOA:Q9WQY2" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR028919" FT /db_xref="InterPro:IPR034728" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:Q9WQY2" FT /protein_id="AAD30190.1" FT /translation="MSLRPFTGTSRTITQDSTSESNIKKGKNSTKRELIEEVDVNQEVE FT NFDWKKLSGIKPNKLYEKNWQEKVKLKQQSIVSAYKEEAISVTHNAYTTTLFPQEVIKN FT VKNQGKLYYHIGMMAIGVKGLHRRKIGTKVMIMFYDDSFGKAREASIGSIEMDMNAGCG FT VFYSCPDFAKYIKDLSHLKIGIQTLGYENYEGKNLSVAIKTIGRLTTNIQSKYKINVKD FT IVEQISSQGIIMVAPMEIDSSHLDGNEWDLSKFLNHENTSRVPTKAFIYQNLQGGESLR FT FSNYKQTRMHDPTENNSDEDEDLKILGEQLNIKMARFYTMQTPEEELLEVIQQLEREKQ FT AMIEKLEAKMKESSKMAIVEDNFNPNNEYLEDTYSEYEDLEFEKLGLTGWEDLDQDSIE FT TEEITEWENPNRVLHREIRAYKSVSEQIEDIFGELLKEHGNYDMALKNLEEKYDLDKIE FT KAQSIEEIAKSSTSSEIRPTKRPKEEQTAYEDDMRDDWKRKELTVNPVEASKDRNFERI FT GSSYKKNFYPSRSEILNLDNVPPQFYYDQLVTWEGIVKNEWEARKKDGMDMWSWMDGRI FT TGLVLYLVQDWIAKNQAAYNDIKSRGDRPENFVKMVKDRFLIEDPTDERRTALQRLAQR FT ELEALNCEDPTKIQPFMAEYLKKASEAKKGFDVVYVERLFDRLPEAVGKVVKADFVKDG FT NSYEAGIGIAVSYISTWMRAKCIKETEAKTHKKASLAFCRSIYTIGDYKKRKILKRVTN FT YNKNRRKNYVRRPSIKKKCRCYICQDENHLANRCPRRYTNQARASLIDGLDEDIVSIAS FT DDEDIENFLEIIELDEFIAHSSQEHEHTWEIGGKKDKVCEICSYFTDYNKTVSCKICET FT QYCKTCADQLAIDVREVKKPTKEESMIEDLKLNVKNLEFRVTILEHKAEMQKLQDKFET FT MQIRNKPEMTEISEATTSLAMRANESNYIKTSINKTAGCYVETKISFNNENRIITALID FT SGSTHNIICPTLIPASWINNTHREIIMFAVDNSKYNLNQELIDDIKLQFQEVDETFGIK FT YKLGQTYVAPKPTKTFIIGHRFLTNENGSVTIHKDYITIQKTTGIYPTARHELKSEFAR FT KHGGRPPLFSNIPETYNKIPHLHSYQAQPILSYKNEIGNQSLITMVKELEALGFIGDDI FT TKNRTTWVCDFKIINPDINITCATIPYTPADKEVFEKQIKELLDNKLIKKADPTCRHRT FT AAFIVRNHSEEVAQKPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKA FT GFHHMKLKDDFKDWTTFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDLKFTLLYID FT DILIASNNEKEHIEHLKIFFNRVKEIGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPH FT IVDKIKKFDKNKLNTFKGLQAYLGLLNYARGYIKNLSKLVGPLYKKTGKNGQRIFNKED FT WNIIFKIEREVSKIKPLERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGY FT ASGNFGEKKTWTSLDYEIEAINEALNKFQIYLDKDFTIRTDCEAIVKGIKTEDYKKRSK FT TRWIKLRDNLLKDGYKPTFEHIKGNKNFLPNFLSREGDFILKCLQNPDSTESYSIDSSE FT SIPLYNDSKESHSIESDDSIPLYRDKLLPLVERLKEKSA" FT CDS 6047..7216 FT /codon_start=1 FT /product="P46" FT /note="ORF4" FT /db_xref="InterPro:IPR009347" FT /db_xref="UniProtKB/TrEMBL:Q9WQY1" FT /protein_id="AAD30191.1" FT /translation="MNIEYPYSIHIIDKNKVPIYDQGNLFHTEKSARLSHVSRGLLDHL FT FTFSSDNTERVRKLHILADYLYLLESERESYRNEWISLSDQVSLLQKQNSELRARIATN FT KEIIEGLREPVKKPIYTTQDKERLRVFFCEERSMEYIYYHIKRLAQQSYYSHLNKLQKD FT CEPFRGIYMSFLTNVKFLVLCEAGYWTVPDIETNTTESLLSLSQKKGKDLLQKGVVIFN FT ELEGGYQLSPRFIGDLYAHGFIKQINFTTKVPEGLPPIIAEKLQDYKFPGSNTVLIERE FT IPRWNFNEMKRETQMRTNLYIFKNYRCFYGYSPLRPYEPITPEEFGFDYYSWENMVDED FT KGEVVYISKNTKIIKVTREHAWAWPEHDGGTMSCTTSIEDEWIHRMDNA" XX SQ Sequence 8006 BP; 3264 A; 1245 C; 1444 G; 2053 T; 0 other; tggtatcaga gcgatgttcg aactttaagg gaaaatagaa tacaatctag tcaaactaat 60 tacataagtt ccgaagagga atcttatttc tcaaaacatt gagtcacgat acgaaaaact 120 tgaattctta gacttagcag tctggggaaa agagaaaaaa caaaaatatt tactatctac 180 cgataatatt agcttttatt gttactttga tactagtaaa actagtgaat cagaaagaaa 240 gcataccttt cattctgata ataagcaact taatagtatt gtagatctta ttattaagca 300 ttctgaaaaa accaaaaata ttaaggaaga attagaaaaa tatagtcagt tcctagataa 360 gatattagat ttaaaaccta ctaaaaaaca agtcgaaaaa ctattagaaa atcaaaactt 420 aattagcaag aactttgatt atatcaaaga acaaaacact cagctagaaa aatcactaag 480 aaaaacagtt aagttagaag actccattaa tactttatta gtagaaatac aacaagctag 540 acctaaggaa gtagaattaa ggactcttaa aatagcagag cagaactcta aggcaataga 600 aaaatttgaa caagaaatta aggatctaag agaaatctta gaatacctta agcaccaatc 660 tacatgagcg ctgattatcc aactttcaag gaagcccttg aaaaatttaa aaacctagaa 720 tcagatacag tttctaaaga taagtttaat tgggtattta ctttagaaaa tataaaaaca 780 actgcagacg taaacctagc atctaaagga ttagtacaac tttacgccct acaagaaatt 840 gataaaaaga taaataatct tacagcccaa gtaagtaagt tacctacaac tagtggaagt 900 agttcagcag gagctatagt acctgcaggt agtaacaccc agggtcaata taaagcacca 960 cctaagaaag gaattaaaag aaaatatcca gcatgagtct tagaccattt actggtactt 1020 ctagaactat aacccaagat tcaacttctg aatctaatat aaaaaaggga aaaaattcaa 1080 caaaaagaga attaatagaa gaagtagatg ttaatcagga agtagaaaac tttgattgga 1140 aaaaattatc aggtattaaa cctaataaat tatatgagaa aaactggcaa gaaaaggtta 1200 agttaaagca acaatctata gtttcagcat ataaagagga agctattagc gtaactcata 1260 atgcatatac tactacttta tttccacaag aagtaattaa gaatgttaaa aatcagggaa 1320 aactttatta tcatataggc atgatggcca taggagttaa aggacttcat agaagaaaaa 1380 taggaactaa agttatgata atgttctatg atgatagttt cggtaaagct agagaagcta 1440 gcatcggatc aatagaaatg gatatgaacg ccggttgcgg agtattttac tcctgccccg 1500 actttgcaaa atatattaaa gatttatcac atcttaagat agggatacaa accctaggat 1560 atgaaaacta tgaaggaaaa aacctttcag tagcaatcaa aactatagga agattaacca 1620 ccaatataca atcaaaatat aagataaatg tgaaagatat tgtggaacaa atatcatcac 1680 aaggaatcat tatggtagca cccatggaaa tagattcatc acacttagat ggaaatgaat 1740 gggatctaag taaattccta aaccatgaaa acacaagtag agtcccaacc aaagccttta 1800 tatatcagaa tctacaagga ggagaatcct taagattctc aaactataag caaactagaa 1860 tgcatgatcc tactgagaat aattcagatg aggatgaaga tttaaaaatc ttaggagaac 1920 aattaaacat taaaatggca agattttaca caatgcaaac cccagaggaa gaattactag 1980 aagtaattca acaattagaa agagaaaaac aagccatgat agaaaaacta gaagccaaaa 2040 tgaaagaatc atccaaaatg gcgatagtag aagataattt caacccaaac aatgaatatc 2100 tagaagatac atattccgaa tatgaagacc tagaatttga aaaattagga ctaactggat 2160 gggaagactt agaccaggat tccatagaaa ccgaagaaat aaccgaatgg gaaaatccta 2220 atcgggtact tcatagagaa attagagcat acaaatcagt ctctgaacaa atagaagata 2280 tatttggaga attactaaaa gaacatggaa actatgatat ggcccttaaa aacttagaag 2340 aaaaatatga cctagacaaa atagaaaaag cccaatctat agaagaaata gccaaatcat 2400 ctacatcgtc agaaattagg ccaactaaac gacctaaaga agaacaaaca gcctatgaag 2460 atgatatgag agatgactgg aaaagaaagg aattaacagt aaatcctgta gaagcctcaa 2520 aggatagaaa ctttgaaaga ataggatcat cctataagaa gaacttttac cctagtcgaa 2580 gtgaaatatt aaacctagat aatgttcccc cacaatttta ttacgaccaa ttagtaacat 2640 gggaaggaat agttaaaaat gaatgggaag cacgaaagaa agacggcatg gatatgtggt 2700 cttggatgga tggaagaata acaggattag tcctatactt agtccaagat tggatagcta 2760 aaaatcaagc cgcctacaat gatataaaat ctagaggtga tagacctgaa aacttcgtaa 2820 aaatggtaaa agataggttc ttaatagaag atcctacaga tgaaagaaga actgcattac 2880 aaaggttagc acaaagagaa ttagaagcct taaactgcga agatcctacg aaaattcaac 2940 catttatggc tgaatatctt aagaaagcct cagaagccaa aaaaggattc gatgtagttt 3000 atgtagaaag actctttgat agactaccag aagcagtagg aaaggtagta aaggctgact 3060 ttgtcaaaga tggtaattcc tatgaagcag gaataggaat agcagtttca tacatatcta 3120 catggatgag agcaaaatgc attaaggaaa cagaagctaa aacccataag aaagcatctt 3180 tagcattctg cagatccata tatactatag gagactataa gaaacgaaaa atcctaaaaa 3240 gagttacaaa ttataataaa aataggagaa agaactacgt cagaagacct agtattaaga 3300 aaaaatgtag atgttatatc tgtcaagatg agaatcacct agccaataga tgtcctagaa 3360 gatataccaa tcaggctaga gcaagtctaa tagatggatt agatgaagat atagtatcaa 3420 tagcatcaga cgatgaagat atcgaaaatt tccttgaaat aatagaactt gatgagttta 3480 tagcacattc tagtcaggaa cacgaacata catgggaaat tggaggaaag aaagataagg 3540 tatgtgaaat atgcagttat tttacagact ataataaaac tgttagttgt aaaatttgtg 3600 aaacccaata ctgcaaaaca tgtgctgatc aactcgcaat agacgtaaga gaagttaaaa 3660 aacctaccaa agaagaatca atgatagaag atttaaaatt aaatgtcaaa aatctagaat 3720 ttagagtcac cattctagaa cataaagcag aaatgcaaaa gcttcaagac aaatttgaaa 3780 ctatgcaaat tagaaataaa ccagaaatga cagaaatatc agaagcaaca acttcattag 3840 ctatgcgagc aaatgaatca aattatataa aaacatcaat taataaaact gcaggatgtt 3900 atgtagaaac aaaaatctca tttaataatg agaatcgaat cataacagca ttaatagatt 3960 caggttcaac acataacata atctgtccaa cattaatacc agcatcatgg attaataata 4020 cacatagaga aattattatg tttgctgtgg ataatagcaa atataatctg aatcaagaat 4080 taatagacga tatcaaatta caatttcaag aagttgatga aacttttgga ataaaatata 4140 aattaggaca aacttatgta gcacctaaac caacaaaaac attcataata ggacatagat 4200 tccttacaaa tgaaaatggt agtgttacaa ttcataaaga ctatataact atacagaaaa 4260 ctactggcat atacccaaca gccagacatg aacttaaatc agagtttgcg cgaaagcatg 4320 gtggacgacc gccattattt tcaaacattc ctgaaactta taacaaaatt cctcatttgc 4380 attcatatca ggctcaacct atattaagtt ataagaatga aataggaaat cagagtttaa 4440 ttactatggt taaggagtta gaagcacttg gatttatcgg agatgatatt actaaaaata 4500 ggacaacatg ggtatgtgac tttaaaatca taaacccaga cattaatata acttgtgcaa 4560 caattccata tacaccagca gataaagaag tatttgaaaa acaaattaaa gaattattag 4620 ataataagtt aattaagaaa gctgatccaa catgtaggca tagaacagca gcatttatag 4680 taagaaatca ttctgaagaa gtagctcaga aacctcgaat agtttataac tataaacgct 4740 tgaatgataa tatgcataca gatcctttta atattcctca taagatttca atgattaatc 4800 tgatacagaa agctaatata ttttctaagt ttgatctgaa agcaggattt catcatatga 4860 aactaaaaga tgatttcaaa gattggacta cttttacatg ctcagaagga ttatatactt 4920 ggaacgtctg tccttttggt atagccaatg ctccatgtgc atttcaaaga ttcatgcaag 4980 agtcatttgg agatttaaag tttacattat tatacattga tgacatactt attgcatcta 5040 acaatgaaaa agagcatata gaacatctta agattttctt taatagagta aaagagatag 5100 gatgtgttct tagtaagaaa aaatcaaaaa tgtttctaaa agaagtagaa tatcttggag 5160 tagaaattaa agaaggaaag attagccttc agccacatat agttgataaa attaaaaaat 5220 ttgataagaa taagctcaat acttttaaag gactacaagc atatctagga ttactcaatt 5280 atgccagagg atatatcaaa aacctatcaa agttagtagg accactttac aaaaagacag 5340 gaaagaatgg gcaaagaatc tttaacaaag aagattggaa tataatcttt aaaatagaaa 5400 gagaggtatc aaagataaag cctttagaaa gacctaaaga aaccgactac atcattatag 5460 aaacagatgc ttcagaagaa ggctggggag cagtcttagt ctgtaagcca gataaatata 5520 gtggcaaaga cactgaaaaa atagcaggct atgcatcagg aaactttgga gaaaagaaaa 5580 cctggactag tttagattat gaaatagaag ccataaatga agccctaaac aagttccaga 5640 tatacttaga caaagatttt acaatcagaa ctgattgtga agcaatagtg aaaggaataa 5700 aaacagaaga ctataagaag agatcaaaga ccagatggat caagttaaga gataatctct 5760 taaaagatgg ctacaagcct acctttgagc atatcaaggg taacaaaaat tttttaccaa 5820 acttcttatc ccgtgaggga gattttattt taaaatgtct tcaaaatccc gattctacgg 5880 aatcatattc tatagattcg tcagaatcaa ttccactata taacgattcg aaagaatcac 5940 attctataga gtctgatgac tcaattccac tatacaggga caagcttctt cctctagtcg 6000 aaaggctaaa ggagaaaagt gcctaactaa gatcggaggc atcaccatga atatagagta 6060 cccgtactca atccacataa tagacaagaa caaggttccg atctacgatc aaggaaatct 6120 cttccacact gagaagtctg cgagactttc acatgtgtcc agaggtttgc tggatcatct 6180 ctttactttt tcgtctgata atactgagcg agttaggaag ctccacatat tagccgatta 6240 tctttaccta ctagaaagtg agagagagtc atatagaaat gagtggatta gcctgagtga 6300 tcaggttagt ctcctacaaa aacaaaatag tgagttgaga gctaggatag ccactaataa 6360 agagataata gagggactga gagagccagt caaaaagcca atatacacaa cccaggataa 6420 agagaggctc cgtgtcttct tttgcgaaga aagaagcatg gaatatatat actatcatat 6480 aaaaaggcta gctcagcaga gctattattc ccacctaaat aagttacaga aggattgcga 6540 gccctttcga gggatctaca tgtctttctt aactaatgtt aaatttctag tattatgtga 6600 agccggatac tggactgtac cagatataga aactaatacc acagagtctt tattaagtct 6660 atctcagaag aaaggaaaag atcttctgca aaagggagtg gtaatattta atgagcttga 6720 aggaggatat caactttctc caaggttcat tggagacctt tatgctcatg gttttattaa 6780 acaaataaac ttcacgacca aggttcctga aggattgccg ccaatcatag cggaaaaact 6840 tcaagactat aagttccctg gatcaaacac agtcttaata gaacgagaga ttcctcgctg 6900 gaactttaat gaaatgaaaa gagagacaca gatgaggacc aatttatata tcttcaagaa 6960 ttatcgatgc ttctatggct attcaccatt aaggccatat gaacctataa ctcctgaaga 7020 atttgggttt gattactaca gttgggaaaa tatggttgat gaagacaaag gagaagtagt 7080 atacatctcc aaaaatacta agattattaa agtcactaga gagcatgcat gggcttggcc 7140 agaacatgat ggaggtacaa tgtcctgcac cacatcaata gaagacgaat ggatccaccg 7200 tatggacaat gcttaaagaa gctttatcaa aaacaacttt aagtacgaat caataaagaa 7260 ggaccagaag atataaagcg ggaacatctt cacatgctac cacatggcta gcatctttac 7320 tttagcatct ctattattgt aagagtgtgt aatgaccagt gtgcccctgg actccagtat 7380 ataaggagca ccagagtatt gtaatagatc atcgatcaag caagcgagag ctaaaacttc 7440 taagagagca agagaggagc ttatcctctc aacccctctt caagaagcaa aggcgatcaa 7500 tggctcaggt cagtgagtag tcgtctttaa ggttcctcta ggaacctctg tgtaatatgt 7560 ttgtacttat gattgtattt ctcaaaacct atccgctgca tgaataaagc tcttatattc 7620 atcctacacc cttgtgataa aacatgaagt catactcgtt ctaagattaa gtgttctaaa 7680 aatacttcga agcattgaaa agggggctaa agggggaaaa agtaccgtca ggccgtgtta 7740 tggcaaggga agaagtacca tgaataccct ataaatgtta gaaggaagat aagaactaag 7800 tatcttatga acaatgagta gctgatttct gattatcatt aacaagtatc gttataatcc 7860 ataagctttg aaagatctgc tagtgtggat accaaaaggc tgtcgtggtt cgcccagtcg 7920 acggatgagg ttataaacga agcactagta ggtaactaag aggcttaggg atgagcaacg 7980 agaaaagtta ggggggtgcc tagaaa 8006 //