ID   AF112981; SV 1; linear; genomic DNA; STD; VRL; 1647 BP.
XX
AC   AF112981;
XX
DT   18-JAN-1999 (Rel. 58, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 3)
XX
DE   Tomato yellow mottle virus transactivation protein gene, partial cds;
DE   replication protein gene, complete cds; and coat protein gene, partial cds.
XX
KW   .
XX
OS   Tomato yellow mottle virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1647
RA   Karkashian J.P., Nakhla M.K., Maxwell D.P., Ramirez P.;
RT   "Molecular characterization of tomato yellow mottle virus from Costa Rica";
RL   Unpublished.
XX
RN   [2]
RP   1-1647
RA   Karkashian J.P.;
RT   ;
RL   Submitted (10-DEC-1998) to the INSDC.
RL   Escuela de Biologia, Universidad de Costa Rica, Campus Rodrigo Facio, San
RL   Jose, Costa Rica
XX
DR   MD5; a1322f47c8cd2d699648a4020ab10ced.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1647
FT                   /organism="Tomato yellow mottle virus"
FT                   /strain="CR1"
FT                   /mol_type="genomic DNA"
FT                   /country="Costa Rica: Alajuela"
FT                   /db_xref="taxon:86502"
FT   CDS             complement(<1..59)
FT                   /codon_start=1
FT                   /product="transactivation protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YQW7"
FT                   /protein_id="AAD05264.1"
FT                   /translation="MLNSSSSTPPSIKPHHRNA"
FT   CDS             complement(1..1056)
FT                   /codon_start=1
FT                   /product="replication protein"
FT                   /db_xref="GOA:Q9YQW6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YQW6"
FT                   /protein_id="AAD05263.1"
FT                   /translation="MPPLKKFSLWAKNIFLTYPRCSLTKEEALFQLQNISLPSNKLFIR
FT                   VARELHEDGEPHLHVLIQLEGKAQIYNQKLFDLSSTTRSAYFHPNIQGAKSSSDVKSYM
FT                   EKDGEFIDFGVFQIDGRSSRGGIQTTNDSYAKALNAGSTESALQIIKEEQPAHYFLHYH
FT                   NLVNNANRIFQKAPEPWVPPFQLSSFNAVPDEMQEWADDYFGRGAAARPERPISIIVEG
FT                   DSRTGKTMWARSLGPHNYLSGHLDFNSRVYSNEVEYNVIDDVAPHYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPRDGGSYKDFLDREENASLKQWTLKNAKFIFLN
FT                   SPLYQTSSQEC"
FT   rep_origin      1050..1200
FT   CDS             1356..>1647
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q9YQW5"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q9YQW5"
FT                   /protein_id="AAD05265.1"
FT                   /translation="MPKRDAPWRLSAGTTKVSRSSNYSPNGGMGPKATSWVNRPMYRKP
FT                   RIYRTLRGPDVPKGCEGPCKVQSYEQRHDVSYVGKVMCISDITRSGGITHRV"
XX
SQ   Sequence 1647 BP; 426 A; 363 C; 369 G; 489 T; 0 other;
     ttagcattcc tgtgatgagg tttgatagag gggggagttg aggaagatga atttagcatt        60
     tttgagagtc cactgtttta gtgacgcatt ttcctctctg tcgaggaaat ctttatagct       120
     ccccccgtct cttggattgc acagcacgat tgatggtatg ccccctttaa tttgaactgg       180
     cttgccgtac ttgcagttgg attgccaatc tttctgggcc ccaatcaatt ctttccagtg       240
     ctttaacttt aagtagtgcg gtgcgacgtc atcgatgacg ttatattcca cttcgttcga       300
     gtaaacccta gaattgaaat ctaaatgacc actcaagtaa ttatgtgggc ctagggaacg       360
     agcccacatt gtcttccctg ttcttgaatc accctcgaca atgatactaa taggtctttc       420
     cggccgcgca gcggcacctc ttccaaaata atcatcagcc cattcttgca tctcgtcagg       480
     aacagcgttg aatgatgaga gttgaaacgg aggaacccat ggttctggag ccttttgaaa       540
     gatcctattt gcattattga ccaaattatg ataatgaaga aaataatgag caggttgttc       600
     ttcttttata atctgtagtg cagattcagt agacccagcg tttaacgctt ttgcatatga       660
     atcattggtt gtctgtatac ctcctctact tgatcttcca tcgatctgga aaactccaaa       720
     atcaatgaat tctccgtctt tctccatgta cgatttaacg tctgagctgc tcttagctcc       780
     ctgaatgttc ggatggaaat atgctgatct ggttgtggaa ctgaggtcga agagtttctg       840
     gttgtatatt tgggctttac cctcgagttg tataagcaca tggagatgag gttccccatc       900
     ttcgtggagt tcccttgcga cacgaatgaa taatttattc gaagggagag agatattctg       960
     gagttgaaag agagcttctt cttttgttaa agaacagcga ggatatgtta agaatatatt      1020
     tttagcccat aggctaaact ttttcaatgg gggcattttt gtaataaaga gcgtaacacc      1080
     aattgggttc ctctccaaaa tgtctaagca attggtgttt tggtgttgaa tttatactac      1140
     aactctcaat actagaactc tccaaaagcg gccatccgta taatattacc ggatggccgc      1200
     gtgccccgac ccgcttccgt aaagtgcgct gggaccacaa ctaaaaacac gacgtccaat      1260
     cacatcacgt ctgacgagtc tagatatcaa gacttgctga ctaagttgtg ggcctataaa      1320
     acaataattg gtcccatttt gatctttaaa ttaaaatgcc caagcgggat gccccttggc      1380
     gtttaagcgc ggggaccact aaggtctccc gctctagtaa ttattctcca aatggaggta      1440
     tgggccctaa ggccacttct tgggttaaca ggcccatgta caggaagccc aggatctatc      1500
     gcacgttgag aggccctgat gtgcccaaag gctgcgaagg tccctgtaag gtccagtcct      1560
     acgagcagcg tcatgacgtc tcttatgttg gcaaagtcat gtgcatctca gacatcacac      1620
     gaagtggtgg tattacccac cgtgtag                                          1647
//